myRT

myRT report for GCA_009101665.1_ASM910166v1

Download annotations/find similar RTs

Seq: WDDJ01000127.1 Bacteroides xylanisolvens strain BIOML-A37 scaffold127_size15820, whole genome shotgun sequence (15820 bp)
Overview 1 RT 1: 2633-15034 bp Neighborhood of RT #1 [2633, 15159] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons PDDEXK_2 Feature: gene Location: 2633-4432 bp Feature: domain Description: rpsA Location: 2702-4301 bp Feature: domain Description: rpsA Location: 2702-4301 bp Feature: gene Location: 4529-10570 bp Feature: domain Description: DUF4011 Location: 5759-6272 bp Feature: domain Description: DUF401 1 Location: 5759-6272 bp Feature: domain Description: DEXXQc_SF1 Location: 6611-7040 bp Feature: domain Description: DEXXQc_SF1 Location: 661 1 -7040 bp Feature: domain Description: DEXXQc_SF1 Location: 8039-8798 bp Feature: domain Description: DEXXQc_SF1 Location: 8039-8798 bp Feature: domain Description: TIGR00376 Location: 8927-9317 bp Feature: domain Description: TIGR00376 Location: 8927-931 7 bp Feature: domain Description: MTES_1575 Location: 9470-9755 bp Feature: domain Description: MTES_1 575 Location: 9470-9755 bp Feature: domain Description: DUF3320 Location: 10085-10220 bp Feature: domain Description: DUF3320 Location: 1 0085-1 0220 bp Feature: gene Location: 10621-11751 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10942-11485 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 0942-1 1 485 bp Feature: gene Location: 11959-14148 bp Feature: gene Location: 14335-15159 bp Feature: domain Description: PDDEXK_2 Location: 14356-15034 bp Feature: domain Description: PDDEXK_2 Location: 1 4356-1 5034 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, PDDEXK_2 (pfam12784)

Seq: WDDJ01000019.1 Bacteroides xylanisolvens strain BIOML-A37 scaffold19_size48571, whole genome shotgun sequence (48571 bp)
Overview 1 RT 1: 25558-33745 bp Neighborhood of RT #1 [25558, 34206] DUF4134 RVT_N RVT-GII GIIM DUF4134 DUF4133 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4141 Feature: gene Location: 25558-25740 bp Feature: domain Description: DUF4134 Location: 25567-25717 bp Feature: domain Description: DUF4134 Location: 2 5567-2 5717 bp Feature: gene Location: 25811-26062 bp Feature: gene Location: 26342-27991 bp Feature: domain Description: RVT_N Location: 26399-26642 bp Feature: domain Description: RVT_N Location: 2 6399-2 6642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26687-27335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6687-2 7335 bp Feature: domain Description: GIIM Note: maturase Location: 27392-27623 bp Feature: domain Description: GIIM Note: maturase Location: 2 7392 -2 762 3 bp Feature: gene Location: 27996-28238 bp Feature: domain Description: DUF4134 Location: 28143-28233 bp Feature: domain Description: DUF4134 Location: 2 8143-2 82 33 bp Feature: gene Location: 28250-28600 bp Feature: domain Description: DUF4133 Location: 28265-28535 bp Feature: domain Description: DUF4133 Location: 2 82 65-2 8535 bp Feature: gene Location: 28830-30659 bp Feature: domain Description: Bac_Flav_CT_G Location: 28833-30645 bp Feature: domain Description: Bac_Flav_CT_G Location: 2 8833-30645 bp Feature: gene Location: 30687-30860 bp Feature: gene Location: 31206-33017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31470-32292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31470-32 2 92 bp Feature: domain Description: Intron_maturas2 Location: 32367-32682 bp Feature: domain Description: Intron_maturas2 Location: 32 367-32 682 bp Feature: domain Description: HNHc Note: nucleases Location: 32838-32988 bp Feature: domain Description: HNHc Note: nucleases Location: 32 838-32 988 bp Feature: gene Location: 33095-33553 bp Feature: domain Description: Bac_Flav_CT_G Location: 33113-33539 bp Feature: domain Description: Bac_Flav_CT_G Location: 33113-33539 bp Feature: gene Location: 33574-34206 bp Feature: domain Description: DUF4141 Location: 33598-33745 bp Feature: domain Description: DUF4141 Location: 33598-33745 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4141 (pfam13605)

Seq: WDDJ01000001.1 Bacteroides xylanisolvens strain BIOML-A37 scaffold1_size177288, whole genome shotgun sequence (177288 bp)
Overview 1 RT 1: 136667-140600 bp Neighborhood of RT #1 [136667, 140600] RVT-UG27 Feature: gene Location: 136667-137314 bp Feature: gene Location: 137328-137996 bp Feature: gene Location: 137989-139251 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 138181-138817 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 13 8181-13 8817 bp Feature: gene Location: 139574-140071 bp Feature: gene Location: 140121-140600 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WDDJ01000031.1 Bacteroides xylanisolvens strain BIOML-A37 scaffold31_size37413, whole genome shotgun sequence (37413 bp)
Overview 1 RT 1: 10437-14086 bp Neighborhood of RT #1 [10437, 14086] RVT-DGRs Feature: gene Location: 10437-10817 bp Feature: gene Location: 10814-11242 bp Feature: gene Location: 11205-12392 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11538-12165 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11538-12165 bp Feature: gene Location: 12514-12651 bp Feature: gene Location: 12725-14086 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDJ01000037.1 Bacteroides xylanisolvens strain BIOML-A37 scaffold37_size35430, whole genome shotgun sequence (35430 bp)
Overview 1 RT 1: 29-2343 bp Neighborhood of RT #1 [29, 2372] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 29-994 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 404-947 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 404-947 bp Feature: gene Location: 1009-1416 bp Feature: domain Description: Avd_like Location: 1042-1351 bp Feature: domain Description: Avd_like Location: 1042-135 1 bp Feature: gene Location: 1563-2372 bp Feature: domain Description: DUF1566 Location: 2094-2343 bp Feature: domain Description: DUF15 66 Location: 2094-2343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: WDDJ01000400.1 Bacteroides xylanisolvens strain BIOML-A37 scaffold400_size4037, whole genome shotgun sequence (4037 bp)
Overview 1 RT 1: 2407-3907 bp Neighborhood of RT #1 [2407, 4035] RVT-DGRs Feature: gene Location: 2407-2715 bp Feature: gene Location: 2737-2994 bp Feature: gene Location: 3070-4035 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3310-3907 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3310-3907 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDJ01000409.1 Bacteroides xylanisolvens strain BIOML-A37 scaffold409_size2483, whole genome shotgun sequence (2483 bp)
Overview 1 RT 1: 114-2482 bp Neighborhood of RT #1 [114, 2482] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 114-1949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1230 bp Feature: domain Description: Intron_maturas2 Location: 1389-1758 bp Feature: domain Description: Intron_maturas2 Location: 1389-17 58 bp Feature: domain Description: HNHc Note: nucleases Location: 1782-1923 bp Feature: domain Description: HNHc Note: nucleases Location: 17 82-1923 bp Feature: gene Location: 2351-2482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDDJ01000042.1 Bacteroides xylanisolvens strain BIOML-A37 scaffold42_size34238, whole genome shotgun sequence (34238 bp)
Overview 1 RT 1: 23772-33234 bp Neighborhood of RT #1 [23772, 33234] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 23772-30509 bp Feature: domain Description: Laminin_G_3 Location: 25233-25311 bp Feature: domain Description: Laminin_G_3 Location: 25233-25311 bp Feature: domain Description: Laminin_G_3 Location: 25962-26388 bp Feature: domain Description: Laminin_G_3 Location: 25962-2638 8 bp Feature: gene Location: 30754-30909 bp Feature: gene Location: 31026-32330 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31239-31833 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31239-318 33 bp Feature: gene Location: 32327-32812 bp Feature: gene Location: 32992-33234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: WDDJ01000009.1 Bacteroides xylanisolvens strain BIOML-A37 scaffold9_size68521, whole genome shotgun sequence (68521 bp)
Overview 1 RT 1: 17682-21516 bp Neighborhood of RT #1 [17682, 21516] Phage_holin_4_1 RVT-DGRs Feature: gene Location: 17682-18152 bp Feature: domain Description: Phage_holin_4_1 Location: 17769-18081 bp Feature: domain Description: Phage_holin_4_1 Location: 17769 -18081 bp Feature: gene Location: 18154-18525 bp Feature: gene Location: 18503-19537 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 18713-19325 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 18713-19 325 bp Feature: gene Location: 19794-20138 bp Feature: gene Location: 20182-21516 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), RVT-DGRs