myRT

myRT report for GCA_009101685.1_ASM910168v1

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Seq: WDDF01000102.1 Bacteroides xylanisolvens strain BIOML-A33 scaffold102_size20214, whole genome shotgun sequence (20214 bp)
Overview 1 RT 1: 1-1984 bp Neighborhood of RT #1 [1, 1984] RVT-DGRs Feature: gene Location: 1-1056 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4-565 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4-565 bp Feature: gene Location: 1053-1538 bp Feature: gene Location: 1742-1984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDF01000111.1 Bacteroides xylanisolvens strain BIOML-A33 scaffold111_size17779, whole genome shotgun sequence (17779 bp)
Overview 1 RT 1: 671-13066 bp Neighborhood of RT #1 [671, 13197] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 671-1495 bp Feature: domain Description: PDDEXK_2 Location: 692-1370 bp Feature: domain Description: PDDEXK_2 Location: 692 -1370 bp Feature: gene Location: 1664-3871 bp Feature: gene Location: 4079-5209 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4400-4943 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4400-4943 bp Feature: gene Location: 5260-11301 bp Feature: domain Description: DUF4011 Location: 6490-7003 bp Feature: domain Description: DUF4011 Location: 6490-7003 bp Feature: domain Description: DEXXQc_SF1 Location: 7342-7771 bp Feature: domain Description: DEXXQc_SF1 Location: 7342 -7771 bp Feature: domain Description: DEXXQc_SF1 Location: 8770-9529 bp Feature: domain Description: DEXXQc_SF1 Location: 8770-952 9 bp Feature: domain Description: TIGR00376 Location: 9658-10048 bp Feature: domain Description: TIGR00376 Location: 9658-10048 bp Feature: domain Description: MTES_1575 Location: 10201-10486 bp Feature: domain Description: MTES_1575 Location: 102 01-10486 bp Feature: domain Description: DUF3320 Location: 10816-10951 bp Feature: domain Description: DUF332 0 Location: 10816-10951 bp Feature: gene Location: 11398-13197 bp Feature: domain Description: rpsA Location: 11467-13066 bp Feature: domain Description: rpsA Location: 11467-13066 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: WDDF01000001.1 Bacteroides xylanisolvens strain BIOML-A33 scaffold1_size198713, whole genome shotgun sequence (198713 bp)
Overview 1 RT 1: 136667-140600 bp Neighborhood of RT #1 [136667, 140600] RVT-UG27 Feature: gene Location: 136667-137314 bp Feature: gene Location: 137328-137996 bp Feature: gene Location: 137989-139251 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 138181-138817 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 13 8181-13 8817 bp Feature: gene Location: 139574-140071 bp Feature: gene Location: 140121-140600 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WDDF01000023.1 Bacteroides xylanisolvens strain BIOML-A33 scaffold23_size53923, whole genome shotgun sequence (53923 bp)
Overview 1 RT 1: 14366-22654 bp Neighborhood of RT #1 [14366, 22654] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 DUF4134 RVT_N RVT-GII GIIM Feature: gene Location: 14366-14998 bp Feature: domain Description: DUF4141 Location: 14390-14537 bp Feature: domain Description: DUF4 14 1 Location: 14 390-14 537 bp Feature: gene Location: 15019-15477 bp Feature: domain Description: Bac_Flav_CT_G Location: 15037-15463 bp Feature: domain Description: Bac_Flav_CT_G Location: 15037-154 63 bp Feature: gene Location: 15555-17366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15819-16641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15819-1664 1 bp Feature: domain Description: Intron_maturas2 Location: 16716-17031 bp Feature: domain Description: Intron_maturas2 Location: 16716-17031 bp Feature: domain Description: HNHc Note: nucleases Location: 17187-17337 bp Feature: domain Description: HNHc Note: nucleases Location: 17187-17337 bp Feature: gene Location: 17712-17885 bp Feature: gene Location: 17913-19742 bp Feature: domain Description: Bac_Flav_CT_G Location: 17916-19728 bp Feature: domain Description: Bac_Flav_CT_G Location: 17916-19728 bp Feature: gene Location: 19972-20322 bp Feature: domain Description: DUF4133 Location: 19987-20257 bp Feature: domain Description: DUF4 133 Location: 19987-20257 bp Feature: gene Location: 20334-20576 bp Feature: domain Description: DUF4134 Location: 20481-20571 bp Feature: domain Description: DUF4 134 Location: 204 81-20571 bp Feature: gene Location: 20581-22230 bp Feature: domain Description: RVT_N Location: 20638-20881 bp Feature: domain Description: RVT_N Location: 20638-20881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20926-21574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20926-21574 bp Feature: domain Description: GIIM Note: maturase Location: 21631-21862 bp Feature: domain Description: GIIM Note: maturase Location: 21631-21862 bp Feature: gene Location: 22334-22486 bp Feature: gene Location: 22499-22654 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), GIIM (pfam08388)

Seq: WDDF01000279.1 Bacteroides xylanisolvens strain BIOML-A33 scaffold279_size2483, whole genome shotgun sequence (2483 bp)
Overview 1 RT 1: 114-2482 bp Neighborhood of RT #1 [114, 2482] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 114-1949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1230 bp Feature: domain Description: Intron_maturas2 Location: 1389-1758 bp Feature: domain Description: Intron_maturas2 Location: 1389-175 8 bp Feature: domain Description: HNHc Note: nucleases Location: 1782-1923 bp Feature: domain Description: HNHc Note: nucleases Location: 1782-1923 bp Feature: gene Location: 2351-2482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDDF01000002.1 Bacteroides xylanisolvens strain BIOML-A33 scaffold2_size167393, whole genome shotgun sequence (167393 bp)
Overview 1 RT 1: 50322-54085 bp Neighborhood of RT #1 [50322, 54156] RVT-DGRs Phage_holin_4_1 Feature: gene Location: 50322-51656 bp Feature: gene Location: 51700-52044 bp Feature: gene Location: 52301-53335 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 52511-53123 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 52511-53123 bp Feature: gene Location: 53313-53684 bp Feature: gene Location: 53686-54156 bp Feature: domain Description: Phage_holin_4_1 Location: 53773-54085 bp Feature: domain Description: Phage_holin_4_1 Location: 53773-54085 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_holin_4_1 (pfam05105)

Seq: WDDF01000337.1 Bacteroides xylanisolvens strain BIOML-A33 scaffold337_size1242, whole genome shotgun sequence (1242 bp)
Overview 1 RT 1: 3-813 bp Neighborhood of RT #1 [3, 1085] RVT-DGRs Feature: gene Location: 3-1085 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 216-813 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 216-813 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDF01000060.1 Bacteroides xylanisolvens strain BIOML-A33 scaffold60_size33863, whole genome shotgun sequence (33863 bp)
Overview 1 RT 1: 23772-33234 bp Neighborhood of RT #1 [23772, 33234] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 23772-30509 bp Feature: domain Description: Laminin_G_3 Location: 25233-25311 bp Feature: domain Description: Laminin_G_3 Location: 25233-25311 bp Feature: domain Description: Laminin_G_3 Location: 25962-26388 bp Feature: domain Description: Laminin_G_3 Location: 25962-2638 8 bp Feature: gene Location: 30754-30909 bp Feature: gene Location: 31026-32330 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31239-31833 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31239-318 33 bp Feature: gene Location: 32327-32812 bp Feature: gene Location: 32992-33234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: WDDF01000064.1 Bacteroides xylanisolvens strain BIOML-A33 scaffold64_size31721, whole genome shotgun sequence (31721 bp)
Overview 1 RT 1: 29-2343 bp Neighborhood of RT #1 [29, 2372] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 29-994 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 404-947 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 404-9 47 bp Feature: gene Location: 1009-1416 bp Feature: domain Description: Avd_like Location: 1042-1351 bp Feature: domain Description: Avd_like Location: 1042-1351 bp Feature: gene Location: 1563-2372 bp Feature: domain Description: DUF1566 Location: 2094-2343 bp Feature: domain Description: DUF1566 Location: 209 4-2343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: WDDF01000071.1 Bacteroides xylanisolvens strain BIOML-A33 scaffold71_size30360, whole genome shotgun sequence (30360 bp)
Overview 1 RT 1: 2-1577 bp Neighborhood of RT #1 [2, 1577] RVT-DGRs Feature: gene Location: 2-667 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5-176 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5-176 bp Feature: gene Location: 664-1149 bp Feature: gene Location: 1335-1577 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDF01000007.1 Bacteroides xylanisolvens strain BIOML-A33 scaffold7_size106243, whole genome shotgun sequence (106243 bp)
Overview 1 RT 1: 89578-93527 bp Neighborhood of RT #1 [89578, 93527] RVT-DGRs Feature: gene Location: 89578-89868 bp Feature: gene Location: 89878-91239 bp Feature: gene Location: 91572-92759 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 91905-92532 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 91905-92532 bp Feature: gene Location: 92722-93150 bp Feature: gene Location: 93147-93527 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs