myRT

myRT report for GCA_009101705.1_ASM910170v1

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Seq: WDDI01000013.1 Bacteroides xylanisolvens strain BIOML-A36 scaffold13_size46565, whole genome shotgun sequence (46565 bp)
Overview 1 RT 1: 13332-26837 bp Neighborhood of RT #1 [13332, 26837] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 13332-13574 bp Feature: gene Location: 13754-14239 bp Feature: gene Location: 14236-15540 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 14449-15043 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 4449-1 5043 bp Feature: gene Location: 16057-22794 bp Feature: domain Description: Laminin_G_3 Location: 17518-17596 bp Feature: domain Description: Laminin_G_3 Location: 1 751 8-1 7596 bp Feature: domain Description: Laminin_G_3 Location: 18247-18673 bp Feature: domain Description: Laminin_G_3 Location: 1 8247-1 8673 bp Feature: gene Location: 22821-26837 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: WDDI01000001.1 Bacteroides xylanisolvens strain BIOML-A36 scaffold1_size167639, whole genome shotgun sequence (167639 bp)
Overview 1 RT 1: 27788-30996 bp Neighborhood of RT #1 [27788, 30996] RVT-UG27 Feature: gene Location: 27788-28066 bp Feature: gene Location: 28096-28362 bp Feature: gene Location: 28412-29674 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 28604-29240 bp Feature: RT Description: RVT-UG2 7 Note: UG2 7 RT Location: 2 8604-2 92 40 bp Feature: gene Location: 29667-30335 bp Feature: gene Location: 30349-30996 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WDDI01000214.1 Bacteroides xylanisolvens strain BIOML-A36 scaffold214_size6596, whole genome shotgun sequence (6596 bp)
Overview 1 RT 1: 61-6327 bp Neighborhood of RT #1 [61, 6593] DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons Feature: gene Location: 61-6102 bp Feature: domain Description: DUF4011 Location: 1291-1804 bp Feature: domain Description: DUF4011 Location: 1291-1804 bp Feature: domain Description: DEXXQc_SF1 Location: 2143-2572 bp Feature: domain Description: DEXXQc_SF1 Location: 2143 -2572 bp Feature: domain Description: DEXXQc_SF1 Location: 3571-4330 bp Feature: domain Description: DEXXQc_SF1 Location: 3 571-43 3 0 bp Feature: domain Description: TIGR00376 Location: 4459-4849 bp Feature: domain Description: TIGR003 76 Location: 4459-4849 bp Feature: domain Description: MTES_1575 Location: 5002-5287 bp Feature: domain Description: MTES_1575 Location: 5002-5287 bp Feature: domain Description: DUF3320 Location: 5617-5752 bp Feature: domain Description: DUF3 3 20 Location: 5617-5752 bp Feature: gene Location: 6153-6593 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6159-6327 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6159-63 27 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons

Seq: WDDI01000025.1 Bacteroides xylanisolvens strain BIOML-A36 scaffold25_size31701, whole genome shotgun sequence (31701 bp)
Overview 1 RT 1: 28-2342 bp Neighborhood of RT #1 [28, 2371] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 28-993 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 403-946 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4 03-94 6 bp Feature: gene Location: 1008-1415 bp Feature: domain Description: Avd_like Location: 1041-1350 bp Feature: domain Description: Avd_like Location: 104 1-1350 bp Feature: gene Location: 1562-2371 bp Feature: domain Description: DUF1566 Location: 2093-2342 bp Feature: domain Description: DUF1566 Location: 2093-234 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: WDDI01000028.1 Bacteroides xylanisolvens strain BIOML-A36 scaffold28_size30865, whole genome shotgun sequence (30865 bp)
Overview 1 RT 1: 14377-22772 bp Neighborhood of RT #1 [14377, 22772] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 DUF4134 RVT_N RVT-GII GIIM Feature: gene Location: 14377-15009 bp Feature: domain Description: DUF4141 Location: 14401-14548 bp Feature: domain Description: DUF4141 Location: 14401-145 48 bp Feature: gene Location: 15030-15488 bp Feature: domain Description: Bac_Flav_CT_G Location: 15048-15474 bp Feature: domain Description: Bac_Flav_CT_G Location: 15 048-15 474 bp Feature: gene Location: 15566-17377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15830-16652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 830-1665 2 bp Feature: domain Description: Intron_maturas2 Location: 16727-17042 bp Feature: domain Description: Intron_maturas2 Location: 16727-17042 bp Feature: domain Description: HNHc Note: nucleases Location: 17198-17348 bp Feature: domain Description: HNHc Note: nucleases Location: 17198-17348 bp Feature: gene Location: 17723-17896 bp Feature: gene Location: 17924-19753 bp Feature: domain Description: Bac_Flav_CT_G Location: 17927-19739 bp Feature: domain Description: Bac_Flav_CT_G Location: 17927-19739 bp Feature: gene Location: 19983-20333 bp Feature: domain Description: DUF4133 Location: 19998-20268 bp Feature: domain Description: DUF4133 Location: 19998-20268 bp Feature: gene Location: 20345-20587 bp Feature: domain Description: DUF4134 Location: 20492-20582 bp Feature: domain Description: DUF4134 Location: 20492-205 82 bp Feature: gene Location: 20592-22241 bp Feature: domain Description: RVT_N Location: 20649-20892 bp Feature: domain Description: RVT_N Location: 20649-20892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20937-21585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20937-215 85 bp Feature: domain Description: GIIM Note: maturase Location: 21642-21873 bp Feature: domain Description: GIIM Note: maturase Location: 21642-21873 bp Feature: gene Location: 22345-22497 bp Feature: gene Location: 22521-22772 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), GIIM (pfam08388)

Seq: WDDI01000373.1 Bacteroides xylanisolvens strain BIOML-A36 scaffold373_size3914, whole genome shotgun sequence (3914 bp)
Overview 1 RT 1: 131-2364 bp Neighborhood of RT #1 [131, 2364] RVT-DGRs Feature: gene Location: 131-1459 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 371-968 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 371-96 8 bp Feature: gene Location: 1456-1941 bp Feature: gene Location: 2122-2364 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDI01000037.1 Bacteroides xylanisolvens strain BIOML-A36 scaffold37_size25965, whole genome shotgun sequence (25965 bp)
Overview 1 RT 1: 19028-22977 bp Neighborhood of RT #1 [19028, 22977] RVT-DGRs Feature: gene Location: 19028-19318 bp Feature: gene Location: 19328-20689 bp Feature: gene Location: 21022-22209 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21355-21982 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21355-21982 bp Feature: gene Location: 22172-22600 bp Feature: gene Location: 22597-22977 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDI01000479.1 Bacteroides xylanisolvens strain BIOML-A36 scaffold479_size3082, whole genome shotgun sequence (3082 bp)
Overview 1 RT 1: 1-3015 bp Neighborhood of RT #1 [1, 3015] RVT-Retrons Feature: gene Location: 1-696 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 322-697 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 322-697 bp Feature: gene Location: 904-3015 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: WDDI01000004.1 Bacteroides xylanisolvens strain BIOML-A36 scaffold4_size82140, whole genome shotgun sequence (82140 bp)
Overview 1 RT 1: 27994-31828 bp Neighborhood of RT #1 [27994, 31828] Phage_holin_4_1 RVT-DGRs Feature: gene Location: 27994-28464 bp Feature: domain Description: Phage_holin_4_1 Location: 28081-28393 bp Feature: domain Description: Phage_holin_4_1 Location: 28081-2839 3 bp Feature: gene Location: 28466-28837 bp Feature: gene Location: 28815-29849 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 29025-29637 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 29 025-29 637 bp Feature: gene Location: 30106-30450 bp Feature: gene Location: 30494-31828 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), RVT-DGRs

Seq: WDDI01000577.1 Bacteroides xylanisolvens strain BIOML-A36 scaffold577_size2485, whole genome shotgun sequence (2485 bp)
Overview 1 RT 1: 115-2483 bp Neighborhood of RT #1 [115, 2483] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 115-1950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-1231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-1231 bp Feature: domain Description: Intron_maturas2 Location: 1390-1759 bp Feature: domain Description: Intron_maturas2 Location: 1390-1759 bp Feature: domain Description: HNHc Note: nucleases Location: 1783-1924 bp Feature: domain Description: HNHc Note: nucleases Location: 1783-1924 bp Feature: gene Location: 2352-2483 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDDI01000951.1 Bacteroides xylanisolvens strain BIOML-A36 scaffold951_size1038, whole genome shotgun sequence (1038 bp)
Overview 1 RT 1: 3-813 bp Neighborhood of RT #1 [3, 1016] RVT-DGRs Feature: gene Location: 3-1016 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 216-813 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 216-813 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs