myRT

myRT report for GCA_009101725.1_ASM910172v1

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Seq: WDDH01000108.1 Bacteroides xylanisolvens strain BIOML-A35 scaffold108_size17610, whole genome shotgun sequence (17610 bp)
Overview 1 RT 1: 652-13047 bp Neighborhood of RT #1 [652, 13178] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 652-1476 bp Feature: domain Description: PDDEXK_2 Location: 673-1351 bp Feature: domain Description: PDDEXK_2 Location: 673-1 351 bp Feature: gene Location: 1645-3852 bp Feature: gene Location: 4060-5190 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4381-4924 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4381 -4924 bp Feature: gene Location: 5241-11282 bp Feature: domain Description: DUF4011 Location: 6471-6984 bp Feature: domain Description: DUF401 1 Location: 6471 -6984 bp Feature: domain Description: DEXXQc_SF1 Location: 7323-7752 bp Feature: domain Description: DEXXQc_SF1 Location: 7323-7752 bp Feature: domain Description: DEXXQc_SF1 Location: 8751-9510 bp Feature: domain Description: DEXXQc_SF1 Location: 8751 -951 0 bp Feature: domain Description: TIGR00376 Location: 9639-10029 bp Feature: domain Description: TIGR00376 Location: 9639-1 0029 bp Feature: domain Description: MTES_1575 Location: 10182-10467 bp Feature: domain Description: MTES_1 575 Location: 1 01 82-1 0467 bp Feature: domain Description: DUF3320 Location: 10797-10932 bp Feature: domain Description: DUF3320 Location: 1 0797-1 0932 bp Feature: gene Location: 11379-13178 bp Feature: domain Description: rpsA Location: 11448-13047 bp Feature: domain Description: rpsA Location: 1 1 448-1 3047 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: WDDH01000015.1 Bacteroides xylanisolvens strain BIOML-A35 scaffold15_size82443, whole genome shotgun sequence (82443 bp)
Overview 1 RT 1: 28229-32063 bp Neighborhood of RT #1 [28229, 32063] Phage_holin_4_1 RVT-DGRs Feature: gene Location: 28229-28699 bp Feature: domain Description: Phage_holin_4_1 Location: 28316-28628 bp Feature: domain Description: Phage_holin_4_1 Location: 2 8316-2 862 8 bp Feature: gene Location: 28701-29072 bp Feature: gene Location: 29050-30084 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 29260-29872 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 92 60-2 9872 bp Feature: gene Location: 30341-30685 bp Feature: gene Location: 30729-32063 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), RVT-DGRs

Seq: WDDH01000176.1 Bacteroides xylanisolvens strain BIOML-A35 scaffold176_size3997, whole genome shotgun sequence (3997 bp)
Overview 1 RT 1: 131-2364 bp Neighborhood of RT #1 [131, 2364] RVT-DGRs Feature: gene Location: 131-1459 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 371-968 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 71-968 bp Feature: gene Location: 1456-1941 bp Feature: gene Location: 2122-2364 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDH01000199.1 Bacteroides xylanisolvens strain BIOML-A35 scaffold199_size2483, whole genome shotgun sequence (2483 bp)
Overview 1 RT 1: 114-2482 bp Neighborhood of RT #1 [114, 2482] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 114-1949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 08-1230 bp Feature: domain Description: Intron_maturas2 Location: 1389-1758 bp Feature: domain Description: Intron_maturas2 Location: 1389-1758 bp Feature: domain Description: HNHc Note: nucleases Location: 1782-1923 bp Feature: domain Description: HNHc Note: nucleases Location: 1782-1923 bp Feature: gene Location: 2351-2482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDDH01000028.1 Bacteroides xylanisolvens strain BIOML-A35 scaffold28_size62541, whole genome shotgun sequence (62541 bp)
Overview 1 RT 1: 60170-62466 bp Neighborhood of RT #1 [60170, 62513] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 60170-60979 bp Feature: domain Description: DUF1566 Location: 60701-60950 bp Feature: domain Description: DUF15 66 Location: 60701-6095 0 bp Feature: gene Location: 61126-61533 bp Feature: domain Description: Avd_like Location: 61159-61468 bp Feature: domain Description: Avd_like Location: 6115 9-61468 bp Feature: gene Location: 61548-62513 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 61923-62466 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 61923-62466 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: WDDH01000002.1 Bacteroides xylanisolvens strain BIOML-A35 scaffold2_size179300, whole genome shotgun sequence (179300 bp)
Overview 1 RT 1: 162635-166584 bp Neighborhood of RT #1 [162635, 166584] RVT-DGRs Feature: gene Location: 162635-162925 bp Feature: gene Location: 162935-164296 bp Feature: gene Location: 164629-165816 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 164962-165589 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 16 496 2-16 5589 bp Feature: gene Location: 165779-166207 bp Feature: gene Location: 166204-166584 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDH01000032.1 Bacteroides xylanisolvens strain BIOML-A35 scaffold32_size56410, whole genome shotgun sequence (56410 bp)
Overview 1 RT 1: 14436-22724 bp Neighborhood of RT #1 [14436, 22724] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 DUF4134 RVT_N RVT-GII GIIM Feature: gene Location: 14436-15068 bp Feature: domain Description: DUF4141 Location: 14460-14607 bp Feature: domain Description: DUF4141 Location: 14460-14607 bp Feature: gene Location: 15089-15547 bp Feature: domain Description: Bac_Flav_CT_G Location: 15107-15533 bp Feature: domain Description: Bac_Flav_CT_G Location: 15107 -15533 bp Feature: gene Location: 15625-17436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15889-16711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15889-167 11 bp Feature: domain Description: Intron_maturas2 Location: 16786-17101 bp Feature: domain Description: Intron_maturas2 Location: 167 86-17 101 bp Feature: domain Description: HNHc Note: nucleases Location: 17257-17407 bp Feature: domain Description: HNHc Note: nucleases Location: 17 257 -17 407 bp Feature: gene Location: 17782-17955 bp Feature: gene Location: 17983-19812 bp Feature: domain Description: Bac_Flav_CT_G Location: 17986-19798 bp Feature: domain Description: Bac_Flav_CT_G Location: 17 986-197 98 bp Feature: gene Location: 20042-20392 bp Feature: domain Description: DUF4133 Location: 20057-20327 bp Feature: domain Description: DUF4133 Location: 20057 -20327 bp Feature: gene Location: 20404-20646 bp Feature: domain Description: DUF4134 Location: 20551-20641 bp Feature: domain Description: DUF4134 Location: 20551-20641 bp Feature: gene Location: 20651-22300 bp Feature: domain Description: RVT_N Location: 20708-20951 bp Feature: domain Description: RVT_N Location: 207 08-20951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20996-21644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20996-21644 bp Feature: domain Description: GIIM Note: maturase Location: 21701-21932 bp Feature: domain Description: GIIM Note: maturase Location: 217 01-21932 bp Feature: gene Location: 22404-22556 bp Feature: gene Location: 22569-22724 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), GIIM (pfam08388)

Seq: WDDH01000005.1 Bacteroides xylanisolvens strain BIOML-A35 scaffold5_size148293, whole genome shotgun sequence (148293 bp)
Overview 1 RT 1: 86511-90444 bp Neighborhood of RT #1 [86511, 90444] RVT-UG27 Feature: gene Location: 86511-87158 bp Feature: gene Location: 87172-87840 bp Feature: gene Location: 87833-89095 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 88025-88661 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 8 8 025-8 8 661 bp Feature: gene Location: 89418-89915 bp Feature: gene Location: 89965-90444 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WDDH01000066.1 Bacteroides xylanisolvens strain BIOML-A35 scaffold66_size34867, whole genome shotgun sequence (34867 bp)
Overview 1 RT 1: 23772-33234 bp Neighborhood of RT #1 [23772, 33234] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 23772-30509 bp Feature: domain Description: Laminin_G_3 Location: 25233-25311 bp Feature: domain Description: Laminin_G_3 Location: 25233-25311 bp Feature: domain Description: Laminin_G_3 Location: 25962-26388 bp Feature: domain Description: Laminin_G_3 Location: 259 62-26388 bp Feature: gene Location: 30754-30909 bp Feature: gene Location: 31026-32330 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31239-31833 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31239 -31833 bp Feature: gene Location: 32327-32812 bp Feature: gene Location: 32992-33234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs