myRT

myRT report for GCA_009101745.1_ASM910174v1

Download annotations/find similar RTs

Seq: WDCR01000115.1 Bacteroides xylanisolvens strain BIOML-A18 scaffold115_size17008, whole genome shotgun sequence (17008 bp)
Overview 1 RT 1: 4431-16880 bp Neighborhood of RT #1 [4431, 17005] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons PDDEXK_2 Feature: gene Location: 4431-6230 bp Feature: domain Description: rpsA Location: 4500-6099 bp Feature: domain Description: rpsA Location: 4500-6099 bp Feature: gene Location: 6327-12368 bp Feature: domain Description: DUF4011 Location: 7557-8070 bp Feature: domain Description: DUF401 1 Location: 7557-8070 bp Feature: domain Description: DEXXQc_SF1 Location: 8409-8838 bp Feature: domain Description: DEXXQc_SF1 Location: 8409-8838 bp Feature: domain Description: DEXXQc_SF1 Location: 9837-10596 bp Feature: domain Description: DEXXQc_SF1 Location: 9837-1 0596 bp Feature: domain Description: TIGR00376 Location: 10725-11115 bp Feature: domain Description: TIGR00376 Location: 1 0725-1 1 1 1 5 bp Feature: domain Description: MTES_1575 Location: 11268-11553 bp Feature: domain Description: MTES_1 575 Location: 1 1 268-1 1 553 bp Feature: domain Description: DUF3320 Location: 11883-12018 bp Feature: domain Description: DUF3320 Location: 1 1 883-1 201 8 bp Feature: gene Location: 12419-13549 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12740-13283 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 2740-1 3283 bp Feature: gene Location: 13757-15946 bp Feature: gene Location: 16133-17005 bp Feature: domain Description: PDDEXK_2 Location: 16202-16880 bp Feature: domain Description: PDDEXK_2 Location: 1 6202-1 6880 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, PDDEXK_2 (pfam12784)

Seq: WDCR01000239.1 Bacteroides xylanisolvens strain BIOML-A18 scaffold239_size2483, whole genome shotgun sequence (2483 bp)
Overview 1 RT 1: 114-2482 bp Neighborhood of RT #1 [114, 2482] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 114-1949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-12 30 bp Feature: domain Description: Intron_maturas2 Location: 1389-1758 bp Feature: domain Description: Intron_maturas2 Location: 1389-1758 bp Feature: domain Description: HNHc Note: nucleases Location: 1782-1923 bp Feature: domain Description: HNHc Note: nucleases Location: 1782 -192 3 bp Feature: gene Location: 2351-2482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDCR01000025.1 Bacteroides xylanisolvens strain BIOML-A18 scaffold25_size56455, whole genome shotgun sequence (56455 bp)
Overview 1 RT 1: 14436-22724 bp Neighborhood of RT #1 [14436, 22724] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 DUF4134 RVT_N RVT-GII GIIM Feature: gene Location: 14436-15068 bp Feature: domain Description: DUF4141 Location: 14460-14607 bp Feature: domain Description: DUF4141 Location: 14460-14607 bp Feature: gene Location: 15089-15547 bp Feature: domain Description: Bac_Flav_CT_G Location: 15107-15533 bp Feature: domain Description: Bac_Flav_CT_G Location: 15107-1553 3 bp Feature: gene Location: 15625-17436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15889-16711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15889-16711 bp Feature: domain Description: Intron_maturas2 Location: 16786-17101 bp Feature: domain Description: Intron_maturas2 Location: 16786-17101 bp Feature: domain Description: HNHc Note: nucleases Location: 17257-17407 bp Feature: domain Description: HNHc Note: nucleases Location: 17257-17407 bp Feature: gene Location: 17782-17955 bp Feature: gene Location: 17983-19812 bp Feature: domain Description: Bac_Flav_CT_G Location: 17986-19798 bp Feature: domain Description: Bac_Flav_CT_G Location: 17986-19798 bp Feature: gene Location: 20042-20392 bp Feature: domain Description: DUF4133 Location: 20057-20327 bp Feature: domain Description: DUF413 3 Location: 20057-203 27 bp Feature: gene Location: 20404-20646 bp Feature: domain Description: DUF4134 Location: 20551-20641 bp Feature: domain Description: DUF413 4 Location: 20551-20641 bp Feature: gene Location: 20651-22300 bp Feature: domain Description: RVT_N Location: 20708-20951 bp Feature: domain Description: RVT_N Location: 20708-20951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20996-21644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20996-21644 bp Feature: domain Description: GIIM Note: maturase Location: 21701-21932 bp Feature: domain Description: GIIM Note: maturase Location: 21701-2193 2 bp Feature: gene Location: 22404-22556 bp Feature: gene Location: 22569-22724 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), GIIM (pfam08388)

Seq: WDCR01000002.1 Bacteroides xylanisolvens strain BIOML-A18 scaffold2_size198713, whole genome shotgun sequence (198713 bp)
Overview 1 RT 1: 58839-62047 bp Neighborhood of RT #1 [58839, 62047] RVT-UG27 Feature: gene Location: 58839-59117 bp Feature: gene Location: 59147-59413 bp Feature: gene Location: 59463-60725 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 59655-60291 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 59655-60291 bp Feature: gene Location: 60718-61386 bp Feature: gene Location: 61400-62047 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WDCR01000032.1 Bacteroides xylanisolvens strain BIOML-A18 scaffold32_size46653, whole genome shotgun sequence (46653 bp)
Overview 1 RT 1: 13420-26925 bp Neighborhood of RT #1 [13420, 26925] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 13420-13662 bp Feature: gene Location: 13842-14327 bp Feature: gene Location: 14324-15628 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 14537-15131 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 145 37-15 131 bp Feature: gene Location: 16145-22882 bp Feature: domain Description: Laminin_G_3 Location: 17606-17684 bp Feature: domain Description: Laminin_G_3 Location: 17606-17684 bp Feature: domain Description: Laminin_G_3 Location: 18335-18761 bp Feature: domain Description: Laminin_G_3 Location: 18335 -18761 bp Feature: gene Location: 22909-26925 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: WDCR01000003.1 Bacteroides xylanisolvens strain BIOML-A18 scaffold3_size167452, whole genome shotgun sequence (167452 bp)
Overview 1 RT 1: 50381-54144 bp Neighborhood of RT #1 [50381, 54215] RVT-DGRs Phage_holin_4_1 Feature: gene Location: 50381-51715 bp Feature: gene Location: 51759-52103 bp Feature: gene Location: 52360-53394 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 52570-53182 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 52570-53182 bp Feature: gene Location: 53372-53743 bp Feature: gene Location: 53745-54215 bp Feature: domain Description: Phage_holin_4_1 Location: 53832-54144 bp Feature: domain Description: Phage_holin_4_1 Location: 53832-54144 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_holin_4_1 (pfam05105)

Seq: WDCR01000055.1 Bacteroides xylanisolvens strain BIOML-A18 scaffold55_size35015, whole genome shotgun sequence (35015 bp)
Overview 1 RT 1: 31098-33994 bp Neighborhood of RT #1 [31098, 33994] RVT-DGRs Feature: gene Location: 31098-31340 bp Feature: gene Location: 31521-32006 bp Feature: gene Location: 32003-33331 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32243-32840 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32243-32840 bp Feature: gene Location: 33407-33664 bp Feature: gene Location: 33686-33994 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCR01000005.1 Bacteroides xylanisolvens strain BIOML-A18 scaffold5_size146181, whole genome shotgun sequence (146181 bp)
Overview 1 RT 1: 12717-16366 bp Neighborhood of RT #1 [12717, 16366] RVT-DGRs Feature: gene Location: 12717-13097 bp Feature: gene Location: 13094-13522 bp Feature: gene Location: 13485-14672 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13818-14445 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 138 18 -14445 bp Feature: gene Location: 14794-14931 bp Feature: gene Location: 15005-16366 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCR01000066.1 Bacteroides xylanisolvens strain BIOML-A18 scaffold66_size31099, whole genome shotgun sequence (31099 bp)
Overview 1 RT 1: 29-2343 bp Neighborhood of RT #1 [29, 2372] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 29-994 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 404-947 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 404-9 47 bp Feature: gene Location: 1009-1416 bp Feature: domain Description: Avd_like Location: 1042-1351 bp Feature: domain Description: Avd_like Location: 1042-1351 bp Feature: gene Location: 1563-2372 bp Feature: domain Description: DUF1566 Location: 2094-2343 bp Feature: domain Description: DUF1566 Location: 209 4-2343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)