myRT

myRT report for GCA_009101775.1_ASM910177v1

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Seq: WDCQ01000107.1 Bacteroides xylanisolvens strain BIOML-A17 scaffold107_size17612, whole genome shotgun sequence (17612 bp)
Overview 1 RT 1: 654-13049 bp Neighborhood of RT #1 [654, 13180] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 654-1478 bp Feature: domain Description: PDDEXK_2 Location: 675-1353 bp Feature: domain Description: PDDEXK_2 Location: 675-1 353 bp Feature: gene Location: 1647-3854 bp Feature: gene Location: 4062-5192 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4383-4926 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4383-4926 bp Feature: gene Location: 5243-11284 bp Feature: domain Description: DUF4011 Location: 6473-6986 bp Feature: domain Description: DUF401 1 Location: 6473-6986 bp Feature: domain Description: DEXXQc_SF1 Location: 7325-7754 bp Feature: domain Description: DEXXQc_SF1 Location: 7325-7754 bp Feature: domain Description: DEXXQc_SF1 Location: 8753-9512 bp Feature: domain Description: DEXXQc_SF1 Location: 8753-951 2 bp Feature: domain Description: TIGR00376 Location: 9641-10031 bp Feature: domain Description: TIGR00376 Location: 9641 -1 0031 bp Feature: domain Description: MTES_1575 Location: 10184-10469 bp Feature: domain Description: MTES_1 575 Location: 1 01 84-1 0469 bp Feature: domain Description: DUF3320 Location: 10799-10934 bp Feature: domain Description: DUF3320 Location: 1 0799-1 0934 bp Feature: gene Location: 11381-13180 bp Feature: domain Description: rpsA Location: 11450-13049 bp Feature: domain Description: rpsA Location: 1 1 450-1 3049 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: WDCQ01000001.1 Bacteroides xylanisolvens strain BIOML-A17 scaffold1_size198713, whole genome shotgun sequence (198713 bp)
Overview 1 RT 1: 136667-140600 bp Neighborhood of RT #1 [136667, 140600] RVT-UG27 Feature: gene Location: 136667-137314 bp Feature: gene Location: 137328-137996 bp Feature: gene Location: 137989-139251 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 138181-138817 bp Feature: RT Description: RVT-UG2 7 Note: UG2 7 RT Location: 138181-138817 bp Feature: gene Location: 139574-140071 bp Feature: gene Location: 140121-140600 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WDCQ01000218.1 Bacteroides xylanisolvens strain BIOML-A17 scaffold218_size2483, whole genome shotgun sequence (2483 bp)
Overview 1 RT 1: 114-2482 bp Neighborhood of RT #1 [114, 2482] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 114-1949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-123 0 bp Feature: domain Description: Intron_maturas2 Location: 1389-1758 bp Feature: domain Description: Intron_maturas2 Location: 13 89-1758 bp Feature: domain Description: HNHc Note: nucleases Location: 1782-1923 bp Feature: domain Description: HNHc Note: nucleases Location: 1782-1923 bp Feature: gene Location: 2351-2482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDCQ01000230.1 Bacteroides xylanisolvens strain BIOML-A17 scaffold230_size2737, whole genome shotgun sequence (2737 bp)
Overview 1 RT 1: 168-2734 bp Neighborhood of RT #1 [168, 2734] RVT-DGRs Feature: gene Location: 168-410 bp Feature: gene Location: 591-1076 bp Feature: gene Location: 1073-2401 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1313-1910 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1313-1910 bp Feature: gene Location: 2477-2734 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCQ01000024.1 Bacteroides xylanisolvens strain BIOML-A17 scaffold24_size62542, whole genome shotgun sequence (62542 bp)
Overview 1 RT 1: 60171-62467 bp Neighborhood of RT #1 [60171, 62514] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 60171-60980 bp Feature: domain Description: DUF1566 Location: 60702-60951 bp Feature: domain Description: DUF15 66 Location: 60702-6095 1 bp Feature: gene Location: 61127-61534 bp Feature: domain Description: Avd_like Location: 61160-61469 bp Feature: domain Description: Avd_like Location: 61160-61469 bp Feature: gene Location: 61549-62514 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 61924-62467 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 61924-62467 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: WDCQ01000260.1 Bacteroides xylanisolvens strain BIOML-A17 scaffold260_size1104, whole genome shotgun sequence (1104 bp)
Overview 1 RT 1: 1-625 bp Neighborhood of RT #1 [1, 1101] RVT-DGRs Feature: gene Location: 1-1101 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 28-625 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 28-6 25 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCQ01000029.1 Bacteroides xylanisolvens strain BIOML-A17 scaffold29_size56513, whole genome shotgun sequence (56513 bp)
Overview 1 RT 1: 14510-22798 bp Neighborhood of RT #1 [14510, 22798] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 DUF4134 RVT_N RVT-GII GIIM Feature: gene Location: 14510-15142 bp Feature: domain Description: DUF4141 Location: 14534-14681 bp Feature: domain Description: DUF4141 Location: 14534-14681 bp Feature: gene Location: 15163-15621 bp Feature: domain Description: Bac_Flav_CT_G Location: 15181-15607 bp Feature: domain Description: Bac_Flav_CT_G Location: 15181-15607 bp Feature: gene Location: 15699-17510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15963-16785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15963-167 85 bp Feature: domain Description: Intron_maturas2 Location: 16860-17175 bp Feature: domain Description: Intron_maturas2 Location: 16860-17 17 5 bp Feature: domain Description: HNHc Note: nucleases Location: 17331-17481 bp Feature: domain Description: HNHc Note: nucleases Location: 17 331-17 481 bp Feature: gene Location: 17856-18029 bp Feature: gene Location: 18057-19886 bp Feature: domain Description: Bac_Flav_CT_G Location: 18060-19872 bp Feature: domain Description: Bac_Flav_CT_G Location: 18060-1987 2 bp Feature: gene Location: 20116-20466 bp Feature: domain Description: DUF4133 Location: 20131-20401 bp Feature: domain Description: DUF4133 Location: 20131-20401 bp Feature: gene Location: 20478-20720 bp Feature: domain Description: DUF4134 Location: 20625-20715 bp Feature: domain Description: DUF4134 Location: 20625-207 15 bp Feature: gene Location: 20725-22374 bp Feature: domain Description: RVT_N Location: 20782-21025 bp Feature: domain Description: RVT_N Location: 207 82-21025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21070-21718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2107 0-217 18 bp Feature: domain Description: GIIM Note: maturase Location: 21775-22006 bp Feature: domain Description: GIIM Note: maturase Location: 217 7 5-22006 bp Feature: gene Location: 22478-22630 bp Feature: gene Location: 22643-22798 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), GIIM (pfam08388)

Seq: WDCQ01000002.1 Bacteroides xylanisolvens strain BIOML-A17 scaffold2_size179637, whole genome shotgun sequence (179637 bp)
Overview 1 RT 1: 162972-166921 bp Neighborhood of RT #1 [162972, 166921] RVT-DGRs Feature: gene Location: 162972-163262 bp Feature: gene Location: 163272-164633 bp Feature: gene Location: 164966-166153 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 165299-165926 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 165299-165926 bp Feature: gene Location: 166116-166544 bp Feature: gene Location: 166541-166921 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCQ01000003.1 Bacteroides xylanisolvens strain BIOML-A17 scaffold3_size167526, whole genome shotgun sequence (167526 bp)
Overview 1 RT 1: 50455-54218 bp Neighborhood of RT #1 [50455, 54289] RVT-DGRs Phage_holin_4_1 Feature: gene Location: 50455-51789 bp Feature: gene Location: 51833-52177 bp Feature: gene Location: 52434-53468 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 52644-53256 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 52644-53256 bp Feature: gene Location: 53446-53817 bp Feature: gene Location: 53819-54289 bp Feature: domain Description: Phage_holin_4_1 Location: 53906-54218 bp Feature: domain Description: Phage_holin_4_1 Location: 539 06-54218 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_holin_4_1 (pfam05105)

Seq: WDCQ01000066.1 Bacteroides xylanisolvens strain BIOML-A17 scaffold66_size34936, whole genome shotgun sequence (34936 bp)
Overview 1 RT 1: 24889-34351 bp Neighborhood of RT #1 [24889, 34351] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 24889-31626 bp Feature: domain Description: Laminin_G_3 Location: 26350-26428 bp Feature: domain Description: Laminin_G_3 Location: 26350-26428 bp Feature: domain Description: Laminin_G_3 Location: 27079-27505 bp Feature: domain Description: Laminin_G_3 Location: 27079-27505 bp Feature: gene Location: 31871-32026 bp Feature: gene Location: 32143-33447 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32356-32950 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32356-32950 bp Feature: gene Location: 33444-33929 bp Feature: gene Location: 34109-34351 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs