myRT

myRT report for GCA_009101785.1_ASM910178v1

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Seq: WDCA01000101.1 Bacteroides xylanisolvens strain BIOML-A1 scaffold101_size17681, whole genome shotgun sequence (17681 bp)
Overview 1 RT 1: 723-13118 bp Neighborhood of RT #1 [723, 13249] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 723-1547 bp Feature: domain Description: PDDEXK_2 Location: 744-1422 bp Feature: domain Description: PDDEXK_2 Location: 744-1 422 bp Feature: gene Location: 1716-3923 bp Feature: gene Location: 4131-5261 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4452-4995 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4452-4995 bp Feature: gene Location: 5312-11353 bp Feature: domain Description: DUF4011 Location: 6542-7055 bp Feature: domain Description: DUF401 1 Location: 6542-7055 bp Feature: domain Description: DEXXQc_SF1 Location: 7394-7823 bp Feature: domain Description: DEXXQc_SF1 Location: 7394-7823 bp Feature: domain Description: DEXXQc_SF1 Location: 8822-9581 bp Feature: domain Description: DEXXQc_SF1 Location: 8822-9581 bp Feature: domain Description: TIGR00376 Location: 9710-10100 bp Feature: domain Description: TIGR00376 Location: 971 0-1 01 00 bp Feature: domain Description: MTES_1575 Location: 10253-10538 bp Feature: domain Description: MTES_1 575 Location: 1 0253-1 0538 bp Feature: domain Description: DUF3320 Location: 10868-11003 bp Feature: domain Description: DUF3320 Location: 1 0868-1 1 003 bp Feature: gene Location: 11450-13249 bp Feature: domain Description: rpsA Location: 11519-13118 bp Feature: domain Description: rpsA Location: 1 1 51 9-1 31 1 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), PDDEXK_2 (pfam12784)

Seq: WDCA01000011.1 Bacteroides xylanisolvens strain BIOML-A1 scaffold11_size112265, whole genome shotgun sequence (112265 bp)
Overview 1 RT 1: 93678-97209 bp Neighborhood of RT #1 [93678, 97209] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 93678-94487 bp Feature: domain Description: DUF1566 Location: 94209-94458 bp Feature: domain Description: DUF1566 Location: 942 09-94458 bp Feature: gene Location: 94634-95041 bp Feature: domain Description: Avd_like Location: 94667-94976 bp Feature: domain Description: Avd_like Location: 94667-94976 bp Feature: gene Location: 95056-96477 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 95431-96133 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 95431-96133 bp Feature: gene Location: 96440-96718 bp Feature: gene Location: 96916-97209 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: WDCA01000129.1 Bacteroides xylanisolvens strain BIOML-A1 scaffold129_size8110, whole genome shotgun sequence (8110 bp)
Overview 1 RT 1: 1-1984 bp Neighborhood of RT #1 [1, 1984] RVT-DGRs Feature: gene Location: 1-1056 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4-562 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4-562 bp Feature: gene Location: 1053-1538 bp Feature: gene Location: 1742-1984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCA01000157.1 Bacteroides xylanisolvens strain BIOML-A1 scaffold157_size2505, whole genome shotgun sequence (2505 bp)
Overview 1 RT 1: 120-2461 bp Neighborhood of RT #1 [120, 2461] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 120-1931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 384-1206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 384 -1206 bp Feature: domain Description: Intron_maturas2 Location: 1395-1605 bp Feature: domain Description: Intron_maturas2 Location: 1395-1605 bp Feature: domain Description: HNHc Note: nucleases Location: 1755-1860 bp Feature: domain Description: HNHc Note: nucleases Location: 1755-1860 bp Feature: gene Location: 2111-2461 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDCA01000158.1 Bacteroides xylanisolvens strain BIOML-A1 scaffold158_size2491, whole genome shotgun sequence (2491 bp)
Overview 1 RT 1: 107-2437 bp Neighborhood of RT #1 [107, 2437] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 107-1918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371-1193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371-1193 bp Feature: domain Description: Intron_maturas2 Location: 1268-1583 bp Feature: domain Description: Intron_maturas2 Location: 1268-15 83 bp Feature: domain Description: HNHc Note: nucleases Location: 1739-1889 bp Feature: domain Description: HNHc Note: nucleases Location: 1739-1889 bp Feature: gene Location: 2264-2437 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDCA01000037.1 Bacteroides xylanisolvens strain BIOML-A1 scaffold37_size58200, whole genome shotgun sequence (58200 bp)
Overview 1 RT 1: 36933-47104 bp Neighborhood of RT #1 [36933, 47142] Laminin_G_3 CotH RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 36933-43721 bp Feature: domain Description: Laminin_G_3 Location: 39369-39750 bp Feature: domain Description: Laminin_G_3 Location: 3936 9-39750 bp Feature: domain Description: CotH Location: 40014-41058 bp Feature: domain Description: CotH Location: 40014-41058 bp Feature: gene Location: 43883-44101 bp Feature: gene Location: 44155-45450 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 44371-44962 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 44371-4496 2 bp Feature: gene Location: 45452-45946 bp Feature: gene Location: 45997-47142 bp Feature: domain Description: Arm-DNA-bind_5 Location: 46021-46267 bp Feature: domain Description: Arm-DNA-bind_5 Location: 46 021-46 26 7 bp Feature: domain Description: Phage_int_SAM_5 Location: 46306-46591 bp Feature: domain Description: Phage_int_SAM_5 Location: 46 306 -46 591 bp Feature: domain Description: INTN1_C_like Location: 46630-47104 bp Feature: domain Description: INTN1_C_like Location: 46 6 30-47104 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), CotH (pfam08757), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: WDCA01000050.1 Bacteroides xylanisolvens strain BIOML-A1 scaffold50_size40122, whole genome shotgun sequence (40122 bp)
Overview 1 RT 1: 2110-4792 bp Neighborhood of RT #1 [2110, 4792] DUF4133 DUF4134 RVT_N RVT-GII GIIM Feature: gene Location: 2110-2460 bp Feature: domain Description: DUF4133 Location: 2125-2395 bp Feature: domain Description: DUF4133 Location: 2125-2395 bp Feature: gene Location: 2472-2714 bp Feature: domain Description: DUF4134 Location: 2619-2709 bp Feature: domain Description: DUF4134 Location: 2619-27 09 bp Feature: gene Location: 2719-4368 bp Feature: RT Description: RVT_N Location: 2776-3019 bp Feature: RT Description: RVT_N Location: 27 7 6-3019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3064-3712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3064-37 12 bp Feature: domain Description: GIIM Note: maturase Location: 3769-4000 bp Feature: domain Description: GIIM Note: maturase Location: 37 69-4000 bp Feature: gene Location: 4472-4624 bp Feature: gene Location: 4637-4792 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WDCA01000065.1 Bacteroides xylanisolvens strain BIOML-A1 scaffold65_size32464, whole genome shotgun sequence (32464 bp)
Overview 1 RT 1: 30499-31967 bp Neighborhood of RT #1 [30499, 32461] RVT-DGRs Feature: gene Location: 30499-30741 bp Feature: gene Location: 30927-31412 bp Feature: gene Location: 31409-32461 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31412-31967 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31412-31967 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCA01000008.1 Bacteroides xylanisolvens strain BIOML-A1 scaffold8_size136341, whole genome shotgun sequence (136341 bp)
Overview 1 RT 1: 24847-30036 bp 2 RT 2: 103635-109229 bp Neighborhood of RT #1 [24847, 30050] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Neighborhood of RT #2 [103635, 109234] DUF1566 Avd_like RVT-DGRs DUF3352 DUF3352 YwqK Feature: gene Location: 24847-25161 bp Feature: domain Description: DUF3876 Location: 24901-25150 bp Feature: domain Description: DUF3876 Location: 249 01-25150 bp Feature: gene Location: 25176-26870 bp Feature: domain Description: Bac_Flav_CT_G Location: 25296-26862 bp Feature: domain Description: Bac_Flav_CT_G Location: 2529 6-26862 bp Feature: gene Location: 26867-28528 bp Feature: RT Description: RVT_N Location: 26921-27164 bp Feature: RT Description: RVT_N Location: 269 21-27164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27209-27857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27209 -27857 bp Feature: domain Description: GIIM Note: maturase Location: 27911-28142 bp Feature: domain Description: GIIM Note: maturase Location: 279 11-28142 bp Feature: gene Location: 28610-28990 bp Feature: gene Location: 29112-30050 bp Feature: domain Description: Bac_Flav_CT_G Location: 29115-30036 bp Feature: domain Description: Bac_Flav_CT_G Location: 29 115-30036 bp Feature: gene Location: 103635-104447 bp Feature: domain Description: DUF1566 Location: 104169-104421 bp Feature: domain Description: DUF1566 Location: 104169 -104421 bp Feature: gene Location: 104593-104973 bp Feature: domain Description: Avd_like Location: 104620-104926 bp Feature: domain Description: Avd_like Location: 104620-1049 26 bp Feature: gene Location: 104988-106409 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 105360-106065 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 105360-106065 bp Feature: gene Location: 106375-106650 bp Feature: gene Location: 107195-109234 bp Feature: domain Description: DUF3352 Location: 107285-108350 bp Feature: domain Description: DUF3352 Location: 107285-108350 bp Feature: domain Description: DUF3352 Location: 108377-108830 bp Feature: domain Description: DUF3352 Location: 108377-108830 bp Feature: domain Description: YwqK Location: 109034-109229 bp Feature: domain Description: YwqK Location: 109 034-109 229 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, DUF3352 (pfam11832), YwqK (COG2849)

Seq: WDCA01000090.1 Bacteroides xylanisolvens strain BIOML-A1 scaffold90_size21160, whole genome shotgun sequence (21160 bp)
Overview 1 RT 1: 1-2911 bp Neighborhood of RT #1 [1, 2911] RVT-DGRs Feature: gene Location: 1-186 bp Feature: gene Location: 431-586 bp Feature: gene Location: 703-2007 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 916-1510 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 916-1510 bp Feature: gene Location: 2004-2489 bp Feature: gene Location: 2669-2911 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCA01000009.1 Bacteroides xylanisolvens strain BIOML-A1 scaffold9_size120293, whole genome shotgun sequence (120293 bp)
Overview 1 RT 1: 69156-76305 bp Neighborhood of RT #1 [69156, 76340] AbiEi_4 AbiEii RVT-GII GIIM RVT-GII OmpA Feature: gene Location: 69156-69884 bp Feature: domain Description: AbiEi_4 Location: 69171-69336 bp Feature: domain Description: AbiEi_4 Location: 69171-69336 bp Feature: gene Location: 70046-70945 bp Feature: domain Description: AbiEii Location: 70058-70610 bp Feature: domain Description: AbiEii Location: 70058-70610 bp Feature: gene Location: 71086-72378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71296-71953 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71296-71953 bp Feature: domain Description: GIIM Note: maturase Location: 72031-72238 bp Feature: domain Description: GIIM Note: maturase Location: 72031-72238 bp Feature: gene Location: 72702-73244 bp Feature: gene Location: 73374-74348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73707-74322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73707-74322 bp Feature: gene Location: 74420-74548 bp Feature: gene Location: 74844-76340 bp Feature: domain Description: OmpA Location: 76041-76305 bp Feature: domain Description: OmpA Location: 76041-76305 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEi_4 (pfam13338), AbiEii (pfam08843), RVT-GII, GIIM (pfam08388), OmpA (pfam00691)