myRT

myRT report for GCA_009101945.1_ASM910194v1

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Seq: WDEL01000019.1 Bacteroides xylanisolvens strain BIOML-A67 scaffold19_size100915, whole genome shotgun sequence (100915 bp)
Overview 1 RT 1: 87738-100139 bp Neighborhood of RT #1 [87738, 100264] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons PDDEXK_2 Feature: gene Location: 87738-89537 bp Feature: domain Description: rpsA Location: 87807-89406 bp Feature: domain Description: rpsA Location: 87807-89406 bp Feature: gene Location: 89634-95675 bp Feature: domain Description: DUF4011 Location: 90864-91377 bp Feature: domain Description: DUF401 1 Location: 90864-91 377 bp Feature: domain Description: DEXXQc_SF1 Location: 91716-92157 bp Feature: domain Description: DEXXQc_SF1 Location: 91 71 6-921 57 bp Feature: domain Description: DEXXQc_SF1 Location: 93153-93903 bp Feature: domain Description: DEXXQc_SF1 Location: 931 53-93903 bp Feature: domain Description: TIGR00376 Location: 94032-94422 bp Feature: domain Description: TIGR00376 Location: 94032-94422 bp Feature: domain Description: MTES_1575 Location: 94575-94860 bp Feature: domain Description: MTES_1 575 Location: 94575-94860 bp Feature: domain Description: DUF3320 Location: 95190-95325 bp Feature: domain Description: DUF3320 Location: 951 90-95325 bp Feature: gene Location: 95726-96856 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 96047-96590 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 96047-96590 bp Feature: gene Location: 97064-99271 bp Feature: gene Location: 99440-100264 bp Feature: domain Description: PDDEXK_2 Location: 99461-100139 bp Feature: domain Description: PDDEXK_2 Location: 99461 -1 001 39 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, PDDEXK_2 (pfam12784)

Seq: WDEL01000001.1 Bacteroides xylanisolvens strain BIOML-A67 scaffold1_size506846, whole genome shotgun sequence (506846 bp)
Overview 1 RT 1: 155397-157428 bp Neighborhood of RT #1 [155397, 157428] RVT-DGRs Feature: gene Location: 155397-155600 bp Feature: gene Location: 155640-155822 bp Feature: gene Location: 155884-156699 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 156217-156544 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1562 17-156544 bp Feature: gene Location: 156665-156862 bp Feature: gene Location: 156844-157428 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDEL01000022.1 Bacteroides xylanisolvens strain BIOML-A67 scaffold22_size99239, whole genome shotgun sequence (99294 bp)
Overview 1 RT 1: 20209-24796 bp Neighborhood of RT #1 [20209, 24828] MPTase-PolyVal RVT-GII Intron_maturas2 DUF1738 Feature: gene Location: 20209-20580 bp Feature: gene Location: 20635-21936 bp Feature: domain Description: MPTase-PolyVal Location: 20890-21202 bp Feature: domain Description: MPTase-PolyVal Location: 20890-21202 bp Feature: gene Location: 21950-23761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22214-23036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22214-23 03 6 bp Feature: domain Description: Intron_maturas2 Location: 23177-23417 bp Feature: domain Description: Intron_maturas2 Location: 23 177-23 417 bp Feature: gene Location: 23892-24149 bp Feature: gene Location: 24325-24828 bp Feature: domain Description: DUF1738 Location: 24379-24796 bp Feature: domain Description: DUF173 8 Location: 243 79-24796 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MPTase-PolyVal (pfam18818), RVT-GII, Intron_maturas2 (pfam01348), DUF1738 (pfam08401)

Seq: WDEL01000026.1 Bacteroides xylanisolvens strain BIOML-A67 scaffold26_size70514, whole genome shotgun sequence (70514 bp)
Overview 1 RT 1: 10750-20499 bp Neighborhood of RT #1 [10750, 20499] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 10750-10992 bp Feature: gene Location: 11171-11656 bp Feature: gene Location: 11653-12957 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11869-12460 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11869-124 60 bp Feature: gene Location: 13461-20180 bp Feature: domain Description: Laminin_G_3 Location: 14904-14982 bp Feature: domain Description: Laminin_G_3 Location: 14 904 -14 982 bp Feature: domain Description: Laminin_G_3 Location: 15633-16059 bp Feature: domain Description: Laminin_G_3 Location: 15633-16059 bp Feature: gene Location: 20194-20499 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: WDEL01000003.1 Bacteroides xylanisolvens strain BIOML-A67 scaffold3_size497530, whole genome shotgun sequence (497530 bp)
Overview 1 RT 1: 372542-380483 bp Neighborhood of RT #1 [372542, 380497] SMC_prok_B Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Bac_Flav_CT_G Feature: gene Location: 372542-375082 bp Feature: domain Description: SMC_prok_B Location: 374090-374402 bp Feature: domain Description: SMC_prok_B Location: 374090-374402 bp Feature: gene Location: 375303-375848 bp Feature: domain Description: Bac_Flav_CT_G Location: 375321-375735 bp Feature: domain Description: Bac_Flav_CT_G Location: 375 321-375 735 bp Feature: gene Location: 375926-377737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376190-377012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376190-377012 bp Feature: domain Description: Intron_maturas2 Location: 377087-377402 bp Feature: domain Description: Intron_maturas2 Location: 377087-377402 bp Feature: domain Description: HNHc Note: nucleases Location: 377558-377708 bp Feature: domain Description: HNHc Note: nucleases Location: 3775 5 8-377708 bp Feature: gene Location: 378083-378256 bp Feature: gene Location: 378284-380497 bp Feature: domain Description: Bac_Flav_CT_G Location: 378434-379943 bp Feature: domain Description: Bac_Flav_CT_G Location: 378434-379943 bp Feature: domain Description: Bac_Flav_CT_G Location: 380015-380483 bp Feature: domain Description: Bac_Flav_CT_G Location: 380015 -380483 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SMC_prok_B (TIGR02168), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDEL01000041.1 Bacteroides xylanisolvens strain BIOML-A67 scaffold41_size64396, whole genome shotgun sequence (64396 bp)
Overview 1 RT 1: 19362-27773 bp Neighborhood of RT #1 [19362, 29569] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs Laminin_G_3 pfam08757 LRR_AMN1 Feature: gene Location: 19362-20507 bp Feature: domain Description: Arm-DNA-bind_5 Location: 19386-19632 bp Feature: domain Description: Arm-DNA-bind_5 Location: 19386 -196 32 bp Feature: domain Description: Phage_int_SAM_5 Location: 19671-19956 bp Feature: domain Description: Phage_int_SAM_5 Location: 196 71-19956 bp Feature: domain Description: INTN1_C_like Location: 19995-20469 bp Feature: domain Description: INTN1_C_like Location: 19995-2046 9 bp Feature: gene Location: 20557-21051 bp Feature: gene Location: 21053-22408 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21329-21920 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21329-21920 bp Feature: gene Location: 22553-22720 bp Feature: gene Location: 22781-29569 bp Feature: domain Description: Laminin_G_3 Location: 25217-25598 bp Feature: domain Description: Laminin_G_3 Location: 25217-25598 bp Feature: domain Description: pfam08757 Location: 26393-26717 bp Feature: domain Description: pfam08757 Location: 26 393-26 717 bp Feature: domain Description: LRR_AMN1 Location: 27329-27773 bp Feature: domain Description: LRR_AMN1 Location: 27329-27773 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-DGRs, Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034)

Seq: WDEL01000054.1 Bacteroides xylanisolvens strain BIOML-A67 scaffold54_size61210, whole genome shotgun sequence (61210 bp)
Overview 1 RT 1: 25020-28733 bp Neighborhood of RT #1 [25020, 28741] Toprim_2 RVT-GII Intron_maturas2 dnaG Feature: gene Location: 25020-25181 bp Feature: gene Location: 25308-26231 bp Feature: domain Description: Toprim_2 Location: 25854-26136 bp Feature: domain Description: Toprim_2 Location: 25854-26136 bp Feature: gene Location: 26203-28011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26467-27289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26467 -27 289 bp Feature: domain Description: Intron_maturas2 Location: 27358-27667 bp Feature: domain Description: Intron_maturas2 Location: 27 358-27 667 bp Feature: gene Location: 28300-28443 bp Feature: gene Location: 28583-28741 bp Feature: domain Description: dnaG Location: 28652-28733 bp Feature: domain Description: dnaG Location: 28652-287 33 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348), dnaG (TIGR01391)

Seq: WDEL01000060.1 Bacteroides xylanisolvens strain BIOML-A67 scaffold60_size39702, whole genome shotgun sequence (39702 bp)
Overview 1 RT 1: 18835-24027 bp Neighborhood of RT #1 [18835, 24038] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 18835-19773 bp Feature: domain Description: Bac_Flav_CT_G Location: 18838-19759 bp Feature: domain Description: Bac_Flav_CT_G Location: 18 8 38 -19759 bp Feature: gene Location: 19952-20101 bp Feature: gene Location: 20357-22018 bp Feature: RT Description: RVT_N Location: 20411-20654 bp Feature: RT Description: RVT_N Location: 20411-20654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20699-21347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20699-21347 bp Feature: domain Description: GIIM Note: maturase Location: 21401-21632 bp Feature: domain Description: GIIM Note: maturase Location: 21401-21632 bp Feature: gene Location: 22015-23709 bp Feature: domain Description: Bac_Flav_CT_G Location: 22135-23701 bp Feature: domain Description: Bac_Flav_CT_G Location: 22135-23701 bp Feature: gene Location: 23724-24038 bp Feature: domain Description: DUF3876 Location: 23778-24027 bp Feature: domain Description: DUF38 76 Location: 23778 -24027 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3876 (pfam12992)