myRT

myRT report for GCA_009102025.1_ASM910202v1

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Seq: WDEF01000131.1 Bacteroides xylanisolvens strain BIOML-A60 scaffold131_size2485, whole genome shotgun sequence (2485 bp)
Overview 1 RT 1: 563-2027 bp Neighborhood of RT #1 [563, 2371] RVT-GII Intron_maturas2 Feature: gene Location: 563-2371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 827-1649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 827-1 649 bp Feature: domain Description: Intron_maturas2 Location: 1718-2027 bp Feature: domain Description: Intron_maturas2 Location: 1 71 8-2027 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: WDEF01000018.1 Bacteroides xylanisolvens strain BIOML-A60 scaffold18_size92210, whole genome shotgun sequence (92210 bp)
Overview 1 RT 1: 14912-22853 bp Neighborhood of RT #1 [14912, 22867] SMC_prok_B Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Bac_Flav_CT_G Feature: gene Location: 14912-17452 bp Feature: domain Description: SMC_prok_B Location: 16460-16772 bp Feature: domain Description: SMC_prok_B Location: 16460-16772 bp Feature: gene Location: 17673-18239 bp Feature: domain Description: Bac_Flav_CT_G Location: 17706-18126 bp Feature: domain Description: Bac_Flav_CT_G Location: 17706-1812 6 bp Feature: gene Location: 18296-20107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18560-19382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18560-19382 bp Feature: domain Description: Intron_maturas2 Location: 19457-19772 bp Feature: domain Description: Intron_maturas2 Location: 19457-19772 bp Feature: domain Description: HNHc Note: nucleases Location: 19928-20078 bp Feature: domain Description: HNHc Note: nucleases Location: 1992 8-2 0078 bp Feature: gene Location: 20453-20626 bp Feature: gene Location: 20654-22867 bp Feature: domain Description: Bac_Flav_CT_G Location: 20804-22313 bp Feature: domain Description: Bac_Flav_CT_G Location: 2 0804-2 2 313 bp Feature: domain Description: Bac_Flav_CT_G Location: 22385-22853 bp Feature: domain Description: Bac_Flav_CT_G Location: 2 2 385-2 2 853 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SMC_prok_B (TIGR02168), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDEF01000022.1 Bacteroides xylanisolvens strain BIOML-A60 scaffold22_size81260, whole genome shotgun sequence (81260 bp)
Overview 1 RT 1: 34923-45092 bp Neighborhood of RT #1 [34923, 45130] Laminin_G_3 pfam08757 LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 34923-41711 bp Feature: domain Description: Laminin_G_3 Location: 37359-37740 bp Feature: domain Description: Laminin_G_3 Location: 3 73 59-3 7740 bp Feature: domain Description: pfam08757 Location: 38535-38859 bp Feature: domain Description: pfam08757 Location: 3 853 5-3 8859 bp Feature: domain Description: LRR_AMN1 Location: 39471-39915 bp Feature: domain Description: LRR_AMN1 Location: 3 9471-3 9915 bp Feature: gene Location: 41772-41939 bp Feature: gene Location: 42084-43439 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 42360-42951 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 423 60-42951 bp Feature: gene Location: 43441-43935 bp Feature: gene Location: 43985-45130 bp Feature: domain Description: Arm-DNA-bind_5 Location: 44009-44255 bp Feature: domain Description: Arm-DNA-bind_5 Location: 44009-44255 bp Feature: domain Description: Phage_int_SAM_5 Location: 44294-44579 bp Feature: domain Description: Phage_int_SAM_5 Location: 44294-44579 bp Feature: domain Description: INTN1_C_like Location: 44618-45092 bp Feature: domain Description: INTN1_C_like Location: 44618-45092 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: WDEF01000024.1 Bacteroides xylanisolvens strain BIOML-A60 scaffold24_size77740, whole genome shotgun sequence (77740 bp)
Overview 1 RT 1: 20209-24796 bp Neighborhood of RT #1 [20209, 24828] MPTase-PolyVal RVT-GII Intron_maturas2 DUF1738 Feature: gene Location: 20209-20580 bp Feature: gene Location: 20635-21948 bp Feature: domain Description: MPTase-PolyVal Location: 20902-21214 bp Feature: domain Description: MPTase-PolyVal Location: 20902-21214 bp Feature: gene Location: 21950-23761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22214-23036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22214 -23036 bp Feature: domain Description: Intron_maturas2 Location: 23177-23417 bp Feature: domain Description: Intron_maturas2 Location: 23177-234 17 bp Feature: gene Location: 23892-24149 bp Feature: gene Location: 24325-24828 bp Feature: domain Description: DUF1738 Location: 24379-24796 bp Feature: domain Description: DUF1738 Location: 24 379-24 796 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MPTase-PolyVal (pfam18818), RVT-GII, Intron_maturas2 (pfam01348), DUF1738 (pfam08401)

Seq: WDEF01000002.1 Bacteroides xylanisolvens strain BIOML-A60 scaffold2_size321926, whole genome shotgun sequence (321926 bp)
Overview 1 RT 1: 250532-253912 bp Neighborhood of RT #1 [250532, 253912] RVT-DGRs Feature: gene Location: 250532-251116 bp Feature: gene Location: 251098-251295 bp Feature: gene Location: 251261-252076 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 251594-251921 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 25 15 94-25 1921 bp Feature: gene Location: 252360-252563 bp Feature: gene Location: 252593-253912 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDEF01000031.1 Bacteroides xylanisolvens strain BIOML-A60 scaffold31_size65119, whole genome shotgun sequence (65119 bp)
Overview 1 RT 1: 652-13047 bp Neighborhood of RT #1 [652, 13178] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 652-1476 bp Feature: domain Description: PDDEXK_2 Location: 673-1351 bp Feature: domain Description: PDDEXK_2 Location: 6 73-1351 bp Feature: gene Location: 1645-3852 bp Feature: gene Location: 4060-5190 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4381-4924 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4381-4924 bp Feature: gene Location: 5241-11282 bp Feature: domain Description: DUF4011 Location: 6471-6984 bp Feature: domain Description: DUF4011 Location: 6 471-6 984 bp Feature: domain Description: DEXXQc_SF1 Location: 7323-7764 bp Feature: domain Description: DEXXQc_SF1 Location: 7323-776 4 bp Feature: domain Description: DEXXQc_SF1 Location: 8760-9510 bp Feature: domain Description: DEXXQc_SF1 Location: 876 0-9510 bp Feature: domain Description: TIGR00376 Location: 9639-10029 bp Feature: domain Description: TIGR00376 Location: 96 39-10029 bp Feature: domain Description: MTES_1575 Location: 10182-10467 bp Feature: domain Description: MTES_1575 Location: 10182-1046 7 bp Feature: domain Description: DUF3320 Location: 10797-10932 bp Feature: domain Description: DUF3320 Location: 10797-10932 bp Feature: gene Location: 11379-13178 bp Feature: domain Description: rpsA Location: 11448-13047 bp Feature: domain Description: rpsA Location: 11448-13047 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), PDDEXK_2 (pfam12784)

Seq: WDEF01000038.1 Bacteroides xylanisolvens strain BIOML-A60 scaffold38_size54132, whole genome shotgun sequence (54132 bp)
Overview 1 RT 1: 10348-20097 bp Neighborhood of RT #1 [10348, 20097] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 10348-10590 bp Feature: gene Location: 10769-11254 bp Feature: gene Location: 11251-12555 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11467-12058 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11467 -12058 bp Feature: gene Location: 13059-19778 bp Feature: domain Description: Laminin_G_3 Location: 14502-14580 bp Feature: domain Description: Laminin_G_3 Location: 14502-14580 bp Feature: domain Description: Laminin_G_3 Location: 15231-15657 bp Feature: domain Description: Laminin_G_3 Location: 15231-15657 bp Feature: gene Location: 19792-20097 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: WDEF01000068.1 Bacteroides xylanisolvens strain BIOML-A60 scaffold68_size21256, whole genome shotgun sequence (21256 bp)
Overview 1 RT 1: 8823-14015 bp Neighborhood of RT #1 [8823, 14026] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 8823-9761 bp Feature: domain Description: Bac_Flav_CT_G Location: 8826-9747 bp Feature: domain Description: Bac_Flav_CT_G Location: 8 8 26-9747 bp Feature: gene Location: 9940-10089 bp Feature: gene Location: 10345-12006 bp Feature: RT Description: RVT_N Location: 10399-10642 bp Feature: RT Description: RVT_N Location: 10399-10642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10687-11335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1068 7-11335 bp Feature: domain Description: GIIM Note: maturase Location: 11389-11620 bp Feature: domain Description: GIIM Note: maturase Location: 1138 9-11620 bp Feature: gene Location: 12003-13697 bp Feature: domain Description: Bac_Flav_CT_G Location: 12123-13689 bp Feature: domain Description: Bac_Flav_CT_G Location: 12123-1368 9 bp Feature: gene Location: 13712-14026 bp Feature: domain Description: DUF3876 Location: 13766-14015 bp Feature: domain Description: DUF38 76 Location: 13766-14015 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Bac_Flav_CT_G (TIGR03783), DUF3876 (pfam12992)