myRT

myRT report for GCA_009102045.1_ASM910204v1

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Seq: WDEH01000010.1 Bacteroides xylanisolvens strain BIOML-A62 scaffold10_size157403, whole genome shotgun sequence (157403 bp)
Overview 1 RT 1: 51933-64334 bp 2 RT 2: 134536-141811 bp Neighborhood of RT #1 [51933, 64459] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons PDDEXK_2 Neighborhood of RT #2 [134536, 142491] Bac_Flav_CT_G Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G SMC_prok_B Feature: gene Location: 51933-53732 bp Feature: domain Description: rpsA Location: 52002-53601 bp Feature: domain Description: rpsA Location: 52002-53601 bp Feature: gene Location: 53829-59870 bp Feature: domain Description: DUF4011 Location: 55059-55572 bp Feature: domain Description: DUF401 1 Location: 55059-55572 bp Feature: domain Description: DEXXQc_SF1 Location: 55911-56352 bp Feature: domain Description: DEXXQc_SF1 Location: 5591 1 -56352 bp Feature: domain Description: DEXXQc_SF1 Location: 57348-58098 bp Feature: domain Description: DEXXQc_SF1 Location: 57348-58098 bp Feature: domain Description: TIGR00376 Location: 58227-58617 bp Feature: domain Description: TIGR00376 Location: 58227-5861 7 bp Feature: domain Description: MTES_1575 Location: 58770-59055 bp Feature: domain Description: MTES_1 575 Location: 58770-59055 bp Feature: domain Description: DUF3320 Location: 59385-59520 bp Feature: domain Description: DUF3320 Location: 59385-59520 bp Feature: gene Location: 59921-61051 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 60242-60785 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 60242-60785 bp Feature: gene Location: 61259-63448 bp Feature: gene Location: 63635-64459 bp Feature: domain Description: PDDEXK_2 Location: 63656-64334 bp Feature: domain Description: PDDEXK_2 Location: 63656-64334 bp Feature: gene Location: 134536-136749 bp Feature: domain Description: Bac_Flav_CT_G Location: 134686-136195 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 34686-1 361 95 bp Feature: domain Description: Bac_Flav_CT_G Location: 136267-136735 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 36267-1 36735 bp Feature: gene Location: 136777-136950 bp Feature: gene Location: 137296-139107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137560-138382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 37560-1 38382 bp Feature: domain Description: Intron_maturas2 Location: 138457-138772 bp Feature: domain Description: Intron_maturas2 Location: 1 38457-1 38772 bp Feature: domain Description: HNHc Note: nucleases Location: 138928-139078 bp Feature: domain Description: HNHc Note: nucleases Location: 1 38928-1 39078 bp Feature: gene Location: 139185-139730 bp Feature: domain Description: Bac_Flav_CT_G Location: 139203-139617 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 39203-1 3961 7 bp Feature: gene Location: 139951-142491 bp Feature: domain Description: SMC_prok_B Location: 141499-141811 bp Feature: domain Description: SMC_prok_B Location: 1 41 499-1 41 81 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, PDDEXK_2 (pfam12784), Bac_Flav_CT_G (TIGR03783), RVT-GII
Intron_maturas2 (pfam01348), HNHc (smart00507), SMC_prok_B (TIGR02168)

Seq: WDEH01000001.1 Bacteroides xylanisolvens strain BIOML-A62 scaffold1_size322822, whole genome shotgun sequence (322822 bp)
Overview 1 RT 1: 250252-253632 bp Neighborhood of RT #1 [250252, 253632] RVT-DGRs Feature: gene Location: 250252-250836 bp Feature: gene Location: 250818-251015 bp Feature: gene Location: 250981-251796 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 251314-251641 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 51314-2 51641 bp Feature: gene Location: 252080-252283 bp Feature: gene Location: 252313-253632 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDEH01000020.1 Bacteroides xylanisolvens strain BIOML-A62 scaffold20_size99099, whole genome shotgun sequence (99099 bp)
Overview 1 RT 1: 20209-24796 bp Neighborhood of RT #1 [20209, 24828] MPTase-PolyVal RVT-GII Intron_maturas2 DUF1738 Feature: gene Location: 20209-20580 bp Feature: gene Location: 20635-21936 bp Feature: domain Description: MPTase-PolyVal Location: 20890-21202 bp Feature: domain Description: MPTase-PolyVal Location: 20890-21202 bp Feature: gene Location: 21950-23761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22214-23036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22214-23 03 6 bp Feature: domain Description: Intron_maturas2 Location: 23177-23417 bp Feature: domain Description: Intron_maturas2 Location: 23 177-23 417 bp Feature: gene Location: 23892-24149 bp Feature: gene Location: 24325-24828 bp Feature: domain Description: DUF1738 Location: 24379-24796 bp Feature: domain Description: DUF173 8 Location: 243 79-24796 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MPTase-PolyVal (pfam18818), RVT-GII, Intron_maturas2 (pfam01348), DUF1738 (pfam08401)

Seq: WDEH01000031.1 Bacteroides xylanisolvens strain BIOML-A62 scaffold31_size70140, whole genome shotgun sequence (70140 bp)
Overview 1 RT 1: 10348-20097 bp Neighborhood of RT #1 [10348, 20097] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 10348-10590 bp Feature: gene Location: 10769-11254 bp Feature: gene Location: 11251-12555 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11467-12058 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 114 67-12058 bp Feature: gene Location: 13059-19778 bp Feature: domain Description: Laminin_G_3 Location: 14502-14580 bp Feature: domain Description: Laminin_G_3 Location: 14 502-14 580 bp Feature: domain Description: Laminin_G_3 Location: 15231-15657 bp Feature: domain Description: Laminin_G_3 Location: 15231-15657 bp Feature: gene Location: 19792-20097 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: WDEH01000036.1 Bacteroides xylanisolvens strain BIOML-A62 scaffold36_size64490, whole genome shotgun sequence (64490 bp)
Overview 1 RT 1: 19362-27773 bp Neighborhood of RT #1 [19362, 29569] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs Laminin_G_3 pfam08757 LRR_AMN1 Feature: gene Location: 19362-20507 bp Feature: domain Description: Arm-DNA-bind_5 Location: 19386-19632 bp Feature: domain Description: Arm-DNA-bind_5 Location: 19386-19632 bp Feature: domain Description: Phage_int_SAM_5 Location: 19671-19956 bp Feature: domain Description: Phage_int_SAM_5 Location: 19671-1995 6 bp Feature: domain Description: INTN1_C_like Location: 19995-20469 bp Feature: domain Description: INTN1_C_like Location: 19995 -20469 bp Feature: gene Location: 20557-21051 bp Feature: gene Location: 21053-22408 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21329-21920 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21329-21920 bp Feature: gene Location: 22553-22720 bp Feature: gene Location: 22781-29569 bp Feature: domain Description: Laminin_G_3 Location: 25217-25598 bp Feature: domain Description: Laminin_G_3 Location: 25 217-25 5 98 bp Feature: domain Description: pfam08757 Location: 26393-26717 bp Feature: domain Description: pfam0875 7 Location: 26393-26717 bp Feature: domain Description: LRR_AMN1 Location: 27329-27773 bp Feature: domain Description: LRR_AMN1 Location: 27329-27773 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-DGRs, Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034)

Seq: WDEH01000066.1 Bacteroides xylanisolvens strain BIOML-A62 scaffold66_size31039, whole genome shotgun sequence (31039 bp)
Overview 1 RT 1: 10539-15731 bp Neighborhood of RT #1 [10539, 15742] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 10539-11477 bp Feature: domain Description: Bac_Flav_CT_G Location: 10542-11463 bp Feature: domain Description: Bac_Flav_CT_G Location: 10542-1146 3 bp Feature: gene Location: 11656-11805 bp Feature: gene Location: 12061-13722 bp Feature: RT Description: RVT_N Location: 12115-12358 bp Feature: RT Description: RVT_N Location: 12115-12358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12403-13051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12403-13051 bp Feature: domain Description: GIIM Note: maturase Location: 13105-13336 bp Feature: domain Description: GIIM Note: maturase Location: 13105-13336 bp Feature: gene Location: 13719-15413 bp Feature: domain Description: Bac_Flav_CT_G Location: 13839-15405 bp Feature: domain Description: Bac_Flav_CT_G Location: 13839-15405 bp Feature: gene Location: 15428-15742 bp Feature: domain Description: DUF3876 Location: 15482-15731 bp Feature: domain Description: DUF3876 Location: 15482-15731 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3876 (pfam12992)

Seq: WDEH01000081.1 Bacteroides xylanisolvens strain BIOML-A62 scaffold81_size27065, whole genome shotgun sequence (27065 bp)
Overview 1 RT 1: 14985-19050 bp Neighborhood of RT #1 [14985, 19064] Phage_holin_6_1 Toprim_2 RVT-GII Intron_maturas2 zf-CHC2 Feature: gene Location: 14985-15380 bp Feature: domain Description: Phage_holin_6_1 Location: 15156-15351 bp Feature: domain Description: Phage_holin_6_1 Location: 15156-15351 bp Feature: gene Location: 15586-16425 bp Feature: domain Description: Toprim_2 Location: 16120-16372 bp Feature: domain Description: Toprim_2 Location: 16120-1637 2 bp Feature: gene Location: 16397-18205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16661-17483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16661-17 483 bp Feature: domain Description: Intron_maturas2 Location: 17552-17861 bp Feature: domain Description: Intron_maturas2 Location: 17 552-17 861 bp Feature: gene Location: 18494-18637 bp Feature: gene Location: 18753-19064 bp Feature: domain Description: zf-CHC2 Location: 18903-19050 bp Feature: domain Description: zf-CHC2 Location: 18903-19050 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_6_1 (pfam09682), Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348), zf-CHC2 (pfam01807)