myRT

myRT report for GCA_009102075.1_ASM910207v1

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Seq: WDEE01000014.1 Bacteroides xylanisolvens strain BIOML-A59 scaffold14_size101354, whole genome shotgun sequence (101354 bp)
Overview 1 RT 1: 88176-100577 bp Neighborhood of RT #1 [88176, 100702] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons PDDEXK_2 Feature: gene Location: 88176-89975 bp Feature: domain Description: rpsA Location: 88245-89844 bp Feature: domain Description: rpsA Location: 88245-89844 bp Feature: gene Location: 90072-96113 bp Feature: domain Description: DUF4011 Location: 91302-91815 bp Feature: domain Description: DUF401 1 Location: 91 302-91 81 5 bp Feature: domain Description: DEXXQc_SF1 Location: 92154-92595 bp Feature: domain Description: DEXXQc_SF1 Location: 921 54-92595 bp Feature: domain Description: DEXXQc_SF1 Location: 93591-94341 bp Feature: domain Description: DEXXQc_SF1 Location: 93591 -94341 bp Feature: domain Description: TIGR00376 Location: 94470-94860 bp Feature: domain Description: TIGR00376 Location: 94470-94860 bp Feature: domain Description: MTES_1575 Location: 95013-95298 bp Feature: domain Description: MTES_1 575 Location: 9501 3-95298 bp Feature: domain Description: DUF3320 Location: 95628-95763 bp Feature: domain Description: DUF3320 Location: 95628-95763 bp Feature: gene Location: 96164-97294 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 96485-97028 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 96485-97028 bp Feature: gene Location: 97502-99709 bp Feature: gene Location: 99878-100702 bp Feature: domain Description: PDDEXK_2 Location: 99899-100577 bp Feature: domain Description: PDDEXK_2 Location: 99899-1 00577 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, PDDEXK_2 (pfam12784)

Seq: WDEE01000138.1 Bacteroides xylanisolvens strain BIOML-A59 scaffold152_size2485, whole genome shotgun sequence (2485 bp)
Overview 1 RT 1: 563-2027 bp Neighborhood of RT #1 [563, 2371] RVT-GII Intron_maturas2 Feature: gene Location: 563-2371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 827-1649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82 7-1649 bp Feature: domain Description: Intron_maturas2 Location: 1718-2027 bp Feature: domain Description: Intron_maturas2 Location: 1718-2 02 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: WDEE01000018.1 Bacteroides xylanisolvens strain BIOML-A59 scaffold18_size92247, whole genome shotgun sequence (92247 bp)
Overview 1 RT 1: 14912-22853 bp Neighborhood of RT #1 [14912, 22867] SMC_prok_B Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Bac_Flav_CT_G Feature: gene Location: 14912-17452 bp Feature: domain Description: SMC_prok_B Location: 16460-16772 bp Feature: domain Description: SMC_prok_B Location: 16460-16772 bp Feature: gene Location: 17673-18239 bp Feature: domain Description: Bac_Flav_CT_G Location: 17706-18126 bp Feature: domain Description: Bac_Flav_CT_G Location: 17706-18126 bp Feature: gene Location: 18296-20107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18560-19382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18560-193 82 bp Feature: domain Description: Intron_maturas2 Location: 19457-19772 bp Feature: domain Description: Intron_maturas2 Location: 19457-19772 bp Feature: domain Description: HNHc Note: nucleases Location: 19928-20078 bp Feature: domain Description: HNHc Note: nucleases Location: 19928-20078 bp Feature: gene Location: 20453-20626 bp Feature: gene Location: 20654-22867 bp Feature: domain Description: Bac_Flav_CT_G Location: 20804-22313 bp Feature: domain Description: Bac_Flav_CT_G Location: 20804-223 13 bp Feature: domain Description: Bac_Flav_CT_G Location: 22385-22853 bp Feature: domain Description: Bac_Flav_CT_G Location: 223 85-22853 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SMC_prok_B (TIGR02168), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDEE01000026.1 Bacteroides xylanisolvens strain BIOML-A59 scaffold26_size77817, whole genome shotgun sequence (77817 bp)
Overview 1 RT 1: 20209-24796 bp Neighborhood of RT #1 [20209, 24828] MPTase-PolyVal RVT-GII Intron_maturas2 DUF1738 Feature: gene Location: 20209-20580 bp Feature: gene Location: 20635-21936 bp Feature: domain Description: MPTase-PolyVal Location: 20890-21202 bp Feature: domain Description: MPTase-PolyVal Location: 20890-21202 bp Feature: gene Location: 21950-23761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22214-23036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22214 -23036 bp Feature: domain Description: Intron_maturas2 Location: 23177-23417 bp Feature: domain Description: Intron_maturas2 Location: 23177-234 17 bp Feature: gene Location: 23892-24149 bp Feature: gene Location: 24325-24828 bp Feature: domain Description: DUF1738 Location: 24379-24796 bp Feature: domain Description: DUF1738 Location: 24 379-24 796 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MPTase-PolyVal (pfam18818), RVT-GII, Intron_maturas2 (pfam01348), DUF1738 (pfam08401)

Seq: WDEE01000002.1 Bacteroides xylanisolvens strain BIOML-A59 scaffold2_size321645, whole genome shotgun sequence (321645 bp)
Overview 1 RT 1: 250251-253631 bp Neighborhood of RT #1 [250251, 253631] RVT-DGRs Feature: gene Location: 250251-250835 bp Feature: gene Location: 250817-251014 bp Feature: gene Location: 250980-251795 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 251313-251640 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 25 1313-25 1640 bp Feature: gene Location: 252079-252282 bp Feature: gene Location: 252312-253631 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDEE01000034.1 Bacteroides xylanisolvens strain BIOML-A59 scaffold34_size58742, whole genome shotgun sequence (58742 bp)
Overview 1 RT 1: 13614-22025 bp Neighborhood of RT #1 [13614, 23821] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs Laminin_G_3 pfam08757 LRR_AMN1 Feature: gene Location: 13614-14759 bp Feature: domain Description: Arm-DNA-bind_5 Location: 13638-13884 bp Feature: domain Description: Arm-DNA-bind_5 Location: 136 38-13884 bp Feature: domain Description: Phage_int_SAM_5 Location: 13923-14208 bp Feature: domain Description: Phage_int_SAM_5 Location: 13923-14208 bp Feature: domain Description: INTN1_C_like Location: 14247-14721 bp Feature: domain Description: INTN1_C_like Location: 14247-14721 bp Feature: gene Location: 14809-15303 bp Feature: gene Location: 15305-16660 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 15581-16172 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 15581-16 172 bp Feature: gene Location: 16805-16972 bp Feature: gene Location: 17033-23821 bp Feature: domain Description: Laminin_G_3 Location: 19469-19850 bp Feature: domain Description: Laminin_G_3 Location: 1946 9-19850 bp Feature: domain Description: pfam08757 Location: 20645-20969 bp Feature: domain Description: pfam08757 Location: 206 45-2096 9 bp Feature: domain Description: LRR_AMN1 Location: 21581-22025 bp Feature: domain Description: LRR_AMN1 Location: 21581-22025 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-DGRs, Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034)

Seq: WDEE01000037.1 Bacteroides xylanisolvens strain BIOML-A59 scaffold37_size54247, whole genome shotgun sequence (54247 bp)
Overview 1 RT 1: 10463-20212 bp Neighborhood of RT #1 [10463, 20212] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 10463-10705 bp Feature: gene Location: 10884-11369 bp Feature: gene Location: 11366-12670 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11582-12173 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11582-1217 3 bp Feature: gene Location: 13174-19893 bp Feature: domain Description: Laminin_G_3 Location: 14617-14695 bp Feature: domain Description: Laminin_G_3 Location: 14617 -14695 bp Feature: domain Description: Laminin_G_3 Location: 15346-15772 bp Feature: domain Description: Laminin_G_3 Location: 15346-157 7 2 bp Feature: gene Location: 19907-20212 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: WDEE01000068.1 Bacteroides xylanisolvens strain BIOML-A59 scaffold68_size22926, whole genome shotgun sequence (22926 bp)
Overview 1 RT 1: 8901-14090 bp Neighborhood of RT #1 [8901, 14104] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 8901-9215 bp Feature: domain Description: DUF3876 Location: 8955-9204 bp Feature: domain Description: DUF38 76 Location: 8 955-9204 bp Feature: gene Location: 9230-10924 bp Feature: domain Description: Bac_Flav_CT_G Location: 9350-10916 bp Feature: domain Description: Bac_Flav_CT_G Location: 9350-10916 bp Feature: gene Location: 10921-12582 bp Feature: RT Description: RVT_N Location: 10975-11218 bp Feature: RT Description: RVT_N Location: 10975-11218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11263-11911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11263-11911 bp Feature: domain Description: GIIM Note: maturase Location: 11965-12196 bp Feature: domain Description: GIIM Note: maturase Location: 11965-12196 bp Feature: gene Location: 12664-13044 bp Feature: gene Location: 13166-14104 bp Feature: domain Description: Bac_Flav_CT_G Location: 13169-14090 bp Feature: domain Description: Bac_Flav_CT_G Location: 13169-14090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Bac_Flav_CT_G (TIGR03783), DUF3876 (pfam12992)