myRT

myRT report for GCA_009102085.1_ASM910208v1

Download annotations/find similar RTs

Seq: WDED01000016.1 Bacteroides xylanisolvens strain BIOML-A58 scaffold16_size125720, whole genome shotgun sequence (125720 bp)
Overview 1 RT 1: 20035-25646 bp Neighborhood of RT #1 [20035, 25651] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc DUF4134 Feature: gene Location: 20035-22557 bp Feature: domain Description: Bac_Flav_CT_G Location: 20038-22525 bp Feature: domain Description: Bac_Flav_CT_G Location: 20038-22525 bp Feature: gene Location: 22598-22807 bp Feature: gene Location: 22938-24746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23202-24021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23202-24021 bp Feature: domain Description: Intron_maturas2 Location: 24096-24423 bp Feature: domain Description: Intron_maturas2 Location: 24096-24423 bp Feature: domain Description: HNHc Note: nucleases Location: 24579-24723 bp Feature: domain Description: HNHc Note: nucleases Location: 24579-24723 bp Feature: gene Location: 24801-25142 bp Feature: gene Location: 25355-25651 bp Feature: domain Description: DUF4134 Location: 25376-25646 bp Feature: domain Description: DUF41 34 Location: 25376-25646 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4134 (pfam13572)

Seq: WDED01000020.1 Bacteroides xylanisolvens strain BIOML-A58 scaffold20_size107877, whole genome shotgun sequence (107877 bp)
Overview 1 RT 1: 79676-87366 bp Neighborhood of RT #1 [79676, 87626] DUF1738 RVT-GII Intron_maturas2 HNHc DUF1738 RVT-GII Intron_maturas2 MPTase-PolyVal Abi_2 Feature: gene Location: 79676-79894 bp Feature: domain Description: DUF1738 Location: 79730-79874 bp Feature: domain Description: DUF1738 Location: 79730-79874 bp Feature: gene Location: 79936-80436 bp Feature: gene Location: 80449-82260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80713-81535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80713-81535 bp Feature: domain Description: Intron_maturas2 Location: 81604-81913 bp Feature: domain Description: Intron_maturas2 Location: 81604-81913 bp Feature: domain Description: HNHc Note: nucleases Location: 82093-82231 bp Feature: domain Description: HNHc Note: nucleases Location: 82 093-82 2 31 bp Feature: gene Location: 82250-82714 bp Feature: domain Description: DUF1738 Location: 82373-82682 bp Feature: domain Description: DUF1738 Location: 82 373-82 682 bp Feature: gene Location: 82890-83147 bp Feature: gene Location: 83278-85089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83542-84364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83542 -84364 bp Feature: domain Description: Intron_maturas2 Location: 84508-84742 bp Feature: domain Description: Intron_maturas2 Location: 84508-84742 bp Feature: gene Location: 85079-86503 bp Feature: domain Description: MPTase-PolyVal Location: 85352-85673 bp Feature: domain Description: MPTase-PolyVal Location: 85352 -85673 bp Feature: gene Location: 86646-87626 bp Feature: domain Description: Abi_2 Location: 86745-87366 bp Feature: domain Description: Abi_2 Location: 86745-87366 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1738 (pfam08401), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), MPTase-PolyVal (pfam18818), Abi_2 (pfam07751)

Seq: WDED01000003.1 Bacteroides xylanisolvens strain BIOML-A58 scaffold3_size249861, whole genome shotgun sequence (249861 bp)
Overview 1 RT 1: 234645-244107 bp Neighborhood of RT #1 [234645, 244107] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 234645-241382 bp Feature: domain Description: Laminin_G_3 Location: 236106-236184 bp Feature: domain Description: Laminin_G_3 Location: 23 6106-23 6184 bp Feature: domain Description: Laminin_G_3 Location: 236835-237261 bp Feature: domain Description: Laminin_G_3 Location: 23 683 5-23 7261 bp Feature: gene Location: 241627-241782 bp Feature: gene Location: 241899-243203 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 242112-242706 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 242112-242706 bp Feature: gene Location: 243200-243685 bp Feature: gene Location: 243865-244107 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: WDED01000073.1 Bacteroides xylanisolvens strain BIOML-A58 scaffold73_size13041, whole genome shotgun sequence (13041 bp)
Overview 1 RT 1: 344-12739 bp Neighborhood of RT #1 [344, 12870] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 KOG1803 MTES_1575 DUF3320 rpsA Feature: gene Location: 344-1168 bp Feature: domain Description: PDDEXK_2 Location: 365-1043 bp Feature: domain Description: PDDEXK_2 Location: 365-104 3 bp Feature: gene Location: 1337-3544 bp Feature: gene Location: 3752-4882 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4073-4616 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4 073-4 616 bp Feature: gene Location: 4933-10974 bp Feature: domain Description: DUF4011 Location: 6163-6676 bp Feature: domain Description: DUF4 011 Location: 6163-6676 bp Feature: domain Description: DEXXQc_SF1 Location: 7015-7456 bp Feature: domain Description: DEXXQc_SF1 Location: 7015-74 56 bp Feature: domain Description: DEXXQc_SF1 Location: 8443-9202 bp Feature: domain Description: DEXXQc_SF1 Location: 84 4 3-9202 bp Feature: domain Description: KOG1803 Location: 9337-9715 bp Feature: domain Description: KOG1803 Location: 9337-9715 bp Feature: domain Description: MTES_1575 Location: 9874-10159 bp Feature: domain Description: MTES_1575 Location: 9874 -10159 bp Feature: domain Description: DUF3320 Location: 10489-10624 bp Feature: domain Description: DUF3320 Location: 104 89-10624 bp Feature: gene Location: 11071-12870 bp Feature: domain Description: rpsA Location: 11140-12739 bp Feature: domain Description: rpsA Location: 1114 0-12739 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), KOG1803 (KOG1803, DNA helicase ), MTES_1575 (pfam18741), DUF3320 (pfam11784)