myRT

myRT report for GCA_009102105.1_ASM910210v1

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Seq: WDEC01000101.1 Bacteroides xylanisolvens strain BIOML-A57 scaffold101_size18050, whole genome shotgun sequence (18050 bp)
Overview 1 RT 1: 4433-16834 bp Neighborhood of RT #1 [4433, 16959] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons PDDEXK_2 Feature: gene Location: 4433-6232 bp Feature: domain Description: rpsA Location: 4502-6101 bp Feature: domain Description: rpsA Location: 4502-61 01 bp Feature: gene Location: 6329-12370 bp Feature: domain Description: DUF4011 Location: 7559-8072 bp Feature: domain Description: DUF401 1 Location: 7559-8072 bp Feature: domain Description: DEXXQc_SF1 Location: 8411-8840 bp Feature: domain Description: DEXXQc_SF1 Location: 841 1 -8840 bp Feature: domain Description: DEXXQc_SF1 Location: 9839-10598 bp Feature: domain Description: DEXXQc_SF1 Location: 9839-1 0598 bp Feature: domain Description: TIGR00376 Location: 10727-11117 bp Feature: domain Description: TIGR00376 Location: 1 0727-1 1 1 1 7 bp Feature: domain Description: MTES_1575 Location: 11270-11555 bp Feature: domain Description: MTES_1 575 Location: 1 1 270-1 1 555 bp Feature: domain Description: DUF3320 Location: 11885-12020 bp Feature: domain Description: DUF3320 Location: 1 1 885-1 2020 bp Feature: gene Location: 12421-13551 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12742-13285 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 2742-1 3285 bp Feature: gene Location: 13759-15966 bp Feature: gene Location: 16135-16959 bp Feature: domain Description: PDDEXK_2 Location: 16156-16834 bp Feature: domain Description: PDDEXK_2 Location: 1 61 56-1 6834 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, PDDEXK_2 (pfam12784)

Seq: WDEC01000104.1 Bacteroides xylanisolvens strain BIOML-A57 scaffold104_size17140, whole genome shotgun sequence (17140 bp)
Overview 1 RT 1: 13223-16119 bp Neighborhood of RT #1 [13223, 16119] RVT-DGRs Feature: gene Location: 13223-13465 bp Feature: gene Location: 13646-14131 bp Feature: gene Location: 14128-15456 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 14368-14965 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 14368-14965 bp Feature: gene Location: 15532-15789 bp Feature: gene Location: 15811-16119 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDEC01000173.1 Bacteroides xylanisolvens strain BIOML-A57 scaffold173_size2485, whole genome shotgun sequence (2485 bp)
Overview 1 RT 1: 115-2483 bp Neighborhood of RT #1 [115, 2483] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 115-1950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-1231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-123 1 bp Feature: domain Description: Intron_maturas2 Location: 1390-1759 bp Feature: domain Description: Intron_maturas2 Location: 13 90-1759 bp Feature: domain Description: HNHc Note: nucleases Location: 1783-1924 bp Feature: domain Description: HNHc Note: nucleases Location: 1783 -1924 bp Feature: gene Location: 2352-2483 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDEC01000002.1 Bacteroides xylanisolvens strain BIOML-A57 scaffold2_size199421, whole genome shotgun sequence (199421 bp)
Overview 1 RT 1: 58577-61785 bp Neighborhood of RT #1 [58577, 61785] RVT-UG27 Feature: gene Location: 58577-58855 bp Feature: gene Location: 58885-59151 bp Feature: gene Location: 59201-60463 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 59393-60029 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 59393-60029 bp Feature: gene Location: 60456-61124 bp Feature: gene Location: 61138-61785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WDEC01000003.1 Bacteroides xylanisolvens strain BIOML-A57 scaffold3_size180044, whole genome shotgun sequence (180044 bp)
Overview 1 RT 1: 163379-167328 bp Neighborhood of RT #1 [163379, 167328] RVT-DGRs Feature: gene Location: 163379-163669 bp Feature: gene Location: 163679-165040 bp Feature: gene Location: 165373-166560 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 165706-166333 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 165 706-166333 bp Feature: gene Location: 166523-166951 bp Feature: gene Location: 166948-167328 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDEC01000043.1 Bacteroides xylanisolvens strain BIOML-A57 scaffold43_size46677, whole genome shotgun sequence (46677 bp)
Overview 1 RT 1: 23772-33234 bp Neighborhood of RT #1 [23772, 33234] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 23772-30509 bp Feature: domain Description: Laminin_G_3 Location: 25233-25311 bp Feature: domain Description: Laminin_G_3 Location: 25233-25311 bp Feature: domain Description: Laminin_G_3 Location: 25962-26388 bp Feature: domain Description: Laminin_G_3 Location: 2596 2-26 388 bp Feature: gene Location: 30754-30909 bp Feature: gene Location: 31026-32330 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31239-31833 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31239-31833 bp Feature: gene Location: 32327-32812 bp Feature: gene Location: 32992-33234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: WDEC01000004.1 Bacteroides xylanisolvens strain BIOML-A57 scaffold4_size167451, whole genome shotgun sequence (167451 bp)
Overview 1 RT 1: 113237-117071 bp Neighborhood of RT #1 [113237, 117071] Phage_holin_4_1 RVT-DGRs Feature: gene Location: 113237-113707 bp Feature: domain Description: Phage_holin_4_1 Location: 113324-113636 bp Feature: domain Description: Phage_holin_4_1 Location: 113324-113636 bp Feature: gene Location: 113709-114080 bp Feature: gene Location: 114058-115092 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 114268-114880 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 114268-114880 bp Feature: gene Location: 115349-115693 bp Feature: gene Location: 115737-117071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), RVT-DGRs

Seq: WDEC01000057.1 Bacteroides xylanisolvens strain BIOML-A57 scaffold57_size36795, whole genome shotgun sequence (36795 bp)
Overview 1 RT 1: 14436-22724 bp Neighborhood of RT #1 [14436, 22724] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 DUF4134 RVT_N RVT-GII GIIM Feature: gene Location: 14436-15068 bp Feature: domain Description: DUF4141 Location: 14460-14607 bp Feature: domain Description: DUF4141 Location: 14460-14607 bp Feature: gene Location: 15089-15547 bp Feature: domain Description: Bac_Flav_CT_G Location: 15107-15533 bp Feature: domain Description: Bac_Flav_CT_G Location: 15107-15533 bp Feature: gene Location: 15625-17436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15889-16711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 158 8 9-16711 bp Feature: domain Description: Intron_maturas2 Location: 16786-17101 bp Feature: domain Description: Intron_maturas2 Location: 1678 6-17101 bp Feature: domain Description: HNHc Note: nucleases Location: 17257-17407 bp Feature: domain Description: HNHc Note: nucleases Location: 17257-17407 bp Feature: gene Location: 17782-17955 bp Feature: gene Location: 17983-19812 bp Feature: domain Description: Bac_Flav_CT_G Location: 17986-19798 bp Feature: domain Description: Bac_Flav_CT_G Location: 1798 6-19798 bp Feature: gene Location: 20042-20392 bp Feature: domain Description: DUF4133 Location: 20057-20327 bp Feature: domain Description: DUF4133 Location: 20057-20327 bp Feature: gene Location: 20404-20646 bp Feature: domain Description: DUF4134 Location: 20551-20641 bp Feature: domain Description: DUF4134 Location: 20551-20641 bp Feature: gene Location: 20651-22300 bp Feature: domain Description: RVT_N Location: 20708-20951 bp Feature: domain Description: RVT_N Location: 20708 -20951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20996-21644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20996-21644 bp Feature: domain Description: GIIM Note: maturase Location: 21701-21932 bp Feature: domain Description: GIIM Note: maturase Location: 21701-21932 bp Feature: gene Location: 22404-22556 bp Feature: gene Location: 22569-22724 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), GIIM (pfam08388)

Seq: WDEC01000073.1 Bacteroides xylanisolvens strain BIOML-A57 scaffold73_size30358, whole genome shotgun sequence (30358 bp)
Overview 1 RT 1: 28-2342 bp Neighborhood of RT #1 [28, 2371] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 28-993 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 403-946 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 403-9 46 bp Feature: gene Location: 1008-1415 bp Feature: domain Description: Avd_like Location: 1041-1350 bp Feature: domain Description: Avd_like Location: 1041-1350 bp Feature: gene Location: 1562-2371 bp Feature: domain Description: DUF1566 Location: 2093-2342 bp Feature: domain Description: DUF1566 Location: 209 3-2342 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)