myRT

myRT report for GCA_009102135.1_ASM910213v1

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Seq: WDDW01000102.1 Bacteroides xylanisolvens strain BIOML-A51 scaffold102_size18050, whole genome shotgun sequence (18050 bp)
Overview 1 RT 1: 4433-16834 bp Neighborhood of RT #1 [4433, 16959] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons PDDEXK_2 Feature: gene Location: 4433-6232 bp Feature: domain Description: rpsA Location: 4502-6101 bp Feature: domain Description: rpsA Location: 4502-61 01 bp Feature: gene Location: 6329-12370 bp Feature: domain Description: DUF4011 Location: 7559-8072 bp Feature: domain Description: DUF401 1 Location: 7559-8072 bp Feature: domain Description: DEXXQc_SF1 Location: 8411-8840 bp Feature: domain Description: DEXXQc_SF1 Location: 841 1 -8840 bp Feature: domain Description: DEXXQc_SF1 Location: 9839-10598 bp Feature: domain Description: DEXXQc_SF1 Location: 9839-1 0598 bp Feature: domain Description: TIGR00376 Location: 10727-11117 bp Feature: domain Description: TIGR00376 Location: 1 0727-1 1 1 1 7 bp Feature: domain Description: MTES_1575 Location: 11270-11555 bp Feature: domain Description: MTES_1 575 Location: 1 1 270-1 1 555 bp Feature: domain Description: DUF3320 Location: 11885-12020 bp Feature: domain Description: DUF3320 Location: 1 1 885-1 2020 bp Feature: gene Location: 12421-13551 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12742-13285 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 2742-1 3285 bp Feature: gene Location: 13759-15966 bp Feature: gene Location: 16135-16959 bp Feature: domain Description: PDDEXK_2 Location: 16156-16834 bp Feature: domain Description: PDDEXK_2 Location: 1 61 56-1 6834 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, PDDEXK_2 (pfam12784)

Seq: WDDW01000189.1 Bacteroides xylanisolvens strain BIOML-A51 scaffold189_size2484, whole genome shotgun sequence (2484 bp)
Overview 1 RT 1: 115-2483 bp Neighborhood of RT #1 [115, 2483] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 115-1950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-1231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-12 31 bp Feature: domain Description: Intron_maturas2 Location: 1390-1759 bp Feature: domain Description: Intron_maturas2 Location: 1390-1759 bp Feature: domain Description: HNHc Note: nucleases Location: 1783-1924 bp Feature: domain Description: HNHc Note: nucleases Location: 1783-192 4 bp Feature: gene Location: 2352-2483 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDDW01000028.1 Bacteroides xylanisolvens strain BIOML-A51 scaffold28_size62571, whole genome shotgun sequence (62571 bp)
Overview 1 RT 1: 60200-62496 bp Neighborhood of RT #1 [60200, 62543] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 60200-61009 bp Feature: domain Description: DUF1566 Location: 60731-60980 bp Feature: domain Description: DUF1566 Location: 6073 1-60980 bp Feature: gene Location: 61156-61563 bp Feature: domain Description: Avd_like Location: 61189-61498 bp Feature: domain Description: Avd_like Location: 61189-61498 bp Feature: gene Location: 61578-62543 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 61953-62496 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 61953 -62496 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: WDDW01000002.1 Bacteroides xylanisolvens strain BIOML-A51 scaffold2_size180425, whole genome shotgun sequence (180425 bp)
Overview 1 RT 1: 163760-167709 bp Neighborhood of RT #1 [163760, 167709] RVT-DGRs Feature: gene Location: 163760-164050 bp Feature: gene Location: 164060-165421 bp Feature: gene Location: 165754-166941 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 166087-166714 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 166087-166714 bp Feature: gene Location: 166904-167332 bp Feature: gene Location: 167329-167709 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDW01000034.1 Bacteroides xylanisolvens strain BIOML-A51 scaffold34_size56455, whole genome shotgun sequence (56455 bp)
Overview 1 RT 1: 14436-22724 bp Neighborhood of RT #1 [14436, 22724] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 DUF4134 RVT_N RVT-GII GIIM Feature: gene Location: 14436-15068 bp Feature: domain Description: DUF4141 Location: 14460-14607 bp Feature: domain Description: DUF4141 Location: 14460-14607 bp Feature: gene Location: 15089-15547 bp Feature: domain Description: Bac_Flav_CT_G Location: 15107-15533 bp Feature: domain Description: Bac_Flav_CT_G Location: 15 107-15 5 33 bp Feature: gene Location: 15625-17436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15889-16711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 889-16711 bp Feature: domain Description: Intron_maturas2 Location: 16786-17101 bp Feature: domain Description: Intron_maturas2 Location: 16786-17101 bp Feature: domain Description: HNHc Note: nucleases Location: 17257-17407 bp Feature: domain Description: HNHc Note: nucleases Location: 1725 7-17407 bp Feature: gene Location: 17782-17955 bp Feature: gene Location: 17983-19812 bp Feature: domain Description: Bac_Flav_CT_G Location: 17986-19798 bp Feature: domain Description: Bac_Flav_CT_G Location: 17986-19798 bp Feature: gene Location: 20042-20392 bp Feature: domain Description: DUF4133 Location: 20057-20327 bp Feature: domain Description: DUF4133 Location: 2005 7-20327 bp Feature: gene Location: 20404-20646 bp Feature: domain Description: DUF4134 Location: 20551-20641 bp Feature: domain Description: DUF4134 Location: 205 5 1-20641 bp Feature: gene Location: 20651-22300 bp Feature: domain Description: RVT_N Location: 20708-20951 bp Feature: domain Description: RVT_N Location: 20708-2095 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20996-21644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20996-21644 bp Feature: domain Description: GIIM Note: maturase Location: 21701-21932 bp Feature: domain Description: GIIM Note: maturase Location: 21701-21932 bp Feature: gene Location: 22404-22556 bp Feature: gene Location: 22569-22724 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), GIIM (pfam08388)

Seq: WDDW01000003.1 Bacteroides xylanisolvens strain BIOML-A51 scaffold3_size167451, whole genome shotgun sequence (167451 bp)
Overview 1 RT 1: 113237-117071 bp Neighborhood of RT #1 [113237, 117071] Phage_holin_4_1 RVT-DGRs Feature: gene Location: 113237-113707 bp Feature: domain Description: Phage_holin_4_1 Location: 113324-113636 bp Feature: domain Description: Phage_holin_4_1 Location: 113324-1136 36 bp Feature: gene Location: 113709-114080 bp Feature: gene Location: 114058-115092 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 114268-114880 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11426 8-114880 bp Feature: gene Location: 115349-115693 bp Feature: gene Location: 115737-117071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), RVT-DGRs

Seq: WDDW01000046.1 Bacteroides xylanisolvens strain BIOML-A51 scaffold46_size46677, whole genome shotgun sequence (46677 bp)
Overview 1 RT 1: 23772-33234 bp Neighborhood of RT #1 [23772, 33234] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 23772-30509 bp Feature: domain Description: Laminin_G_3 Location: 25233-25311 bp Feature: domain Description: Laminin_G_3 Location: 25233-25311 bp Feature: domain Description: Laminin_G_3 Location: 25962-26388 bp Feature: domain Description: Laminin_G_3 Location: 25962-26388 bp Feature: gene Location: 30754-30909 bp Feature: gene Location: 31026-32330 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31239-31833 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31239-31833 bp Feature: gene Location: 32327-32812 bp Feature: gene Location: 32992-33234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: WDDW01000005.1 Bacteroides xylanisolvens strain BIOML-A51 scaffold5_size154315, whole genome shotgun sequence (154315 bp)
Overview 1 RT 1: 14441-17649 bp Neighborhood of RT #1 [14441, 17649] RVT-UG27 Feature: gene Location: 14441-14719 bp Feature: gene Location: 14749-15015 bp Feature: gene Location: 15065-16327 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 15257-15893 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 15257-158 93 bp Feature: gene Location: 16320-16988 bp Feature: gene Location: 17002-17649 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WDDW01000069.1 Bacteroides xylanisolvens strain BIOML-A51 scaffold69_size33461, whole genome shotgun sequence (33461 bp)
Overview 1 RT 1: 31098-32840 bp Neighborhood of RT #1 [31098, 33331] RVT-DGRs Feature: gene Location: 31098-31340 bp Feature: gene Location: 31521-32006 bp Feature: gene Location: 32003-33331 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32243-32840 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32243-32840 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDW01000074.1 Bacteroides xylanisolvens strain BIOML-A51 scaffold74_size30749, whole genome shotgun sequence (30749 bp)
Overview 1 RT 1: 1-1966 bp Neighborhood of RT #1 [1, 1966] RVT-DGRs Feature: gene Location: 1-1056 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4-565 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4-565 bp Feature: gene Location: 1053-1538 bp Feature: gene Location: 1724-1966 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDW01000078.1 Bacteroides xylanisolvens strain BIOML-A51 scaffold78_size27949, whole genome shotgun sequence (27949 bp)
Overview 1 RT 1: 18248-22318 bp Neighborhood of RT #1 [18248, 22395] RVT-DGRs TipAS COG2369 LPD3 Feature: gene Location: 18248-18490 bp Feature: gene Location: 18694-19179 bp Feature: gene Location: 19176-20477 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 19389-19986 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 19389-19986 bp Feature: gene Location: 20853-21086 bp Feature: gene Location: 21184-22395 bp Feature: domain Description: TipAS Location: 21208-21511 bp Feature: domain Description: TipAS Location: 21208-21511 bp Feature: domain Description: COG2369 Location: 21631-21817 bp Feature: domain Description: COG2369 Location: 21631-21817 bp Feature: domain Description: LPD3 Location: 22036-22318 bp Feature: domain Description: LPD3 Location: 22036-22318 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, TipAS (pfam07739), COG2369 (Uncharacterized conserved protein, contains phage Mu gpF-like domain ), LPD3 (pfam18798)