myRT

myRT report for GCA_009102145.1_ASM910214v1

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Seq: WDDU01000122.1 Bacteroides xylanisolvens strain BIOML-A49 scaffold122_size15342, whole genome shotgun sequence (15342 bp)
Overview 1 RT 1: 29-2343 bp Neighborhood of RT #1 [29, 2372] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 29-994 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 404-947 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 404-947 bp Feature: gene Location: 1009-1416 bp Feature: domain Description: Avd_like Location: 1042-1351 bp Feature: domain Description: Avd_like Location: 1 042-1 351 bp Feature: gene Location: 1563-2372 bp Feature: domain Description: DUF1566 Location: 2094-2343 bp Feature: domain Description: DUF1 566 Location: 2094-2343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: WDDU01000129.1 Bacteroides xylanisolvens strain BIOML-A49 scaffold129_size14769, whole genome shotgun sequence (14769 bp)
Overview 1 RT 1: 4433-14766 bp Neighborhood of RT #1 [4433, 14766] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons Feature: gene Location: 4433-6232 bp Feature: domain Description: rpsA Location: 4502-6101 bp Feature: domain Description: rpsA Location: 4502 -6101 bp Feature: gene Location: 6329-12370 bp Feature: domain Description: DUF4011 Location: 7559-8072 bp Feature: domain Description: DUF4011 Location: 7559-8072 bp Feature: domain Description: DEXXQc_SF1 Location: 8411-8840 bp Feature: domain Description: DEXXQc_SF1 Location: 8411-8840 bp Feature: domain Description: DEXXQc_SF1 Location: 9839-10598 bp Feature: domain Description: DEXXQc_SF1 Location: 9839-10598 bp Feature: domain Description: TIGR00376 Location: 10727-11117 bp Feature: domain Description: TIGR00376 Location: 1072 7-11117 bp Feature: domain Description: MTES_1575 Location: 11270-11555 bp Feature: domain Description: MTES_1575 Location: 112 70-11555 bp Feature: domain Description: DUF3320 Location: 11885-12020 bp Feature: domain Description: DUF332 0 Location: 11885-12 02 0 bp Feature: gene Location: 12421-13551 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12742-13285 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 742 -132 85 bp Feature: gene Location: 13759-14766 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons

Seq: WDDU01000001.1 Bacteroides xylanisolvens strain BIOML-A49 scaffold1_size174695, whole genome shotgun sequence (174695 bp)
Overview 1 RT 1: 34821-38029 bp Neighborhood of RT #1 [34821, 38029] RVT-UG27 Feature: gene Location: 34821-35099 bp Feature: gene Location: 35129-35395 bp Feature: gene Location: 35445-36707 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 35637-36273 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 3 563 7-3 6273 bp Feature: gene Location: 36700-37368 bp Feature: gene Location: 37382-38029 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WDDU01000022.1 Bacteroides xylanisolvens strain BIOML-A49 scaffold22_size50538, whole genome shotgun sequence (50538 bp)
Overview 1 RT 1: 33873-37822 bp Neighborhood of RT #1 [33873, 37822] RVT-DGRs Feature: gene Location: 33873-34163 bp Feature: gene Location: 34173-35534 bp Feature: gene Location: 35867-37054 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 36200-36827 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 36200-36827 bp Feature: gene Location: 37017-37445 bp Feature: gene Location: 37442-37822 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDU01000024.1 Bacteroides xylanisolvens strain BIOML-A49 scaffold24_size49542, whole genome shotgun sequence (49542 bp)
Overview 1 RT 1: 14436-22724 bp Neighborhood of RT #1 [14436, 22724] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 DUF4134 RVT_N RVT-GII GIIM Feature: gene Location: 14436-15068 bp Feature: domain Description: DUF4141 Location: 14460-14607 bp Feature: domain Description: DUF4141 Location: 14460-14607 bp Feature: gene Location: 15089-15547 bp Feature: domain Description: Bac_Flav_CT_G Location: 15107-15533 bp Feature: domain Description: Bac_Flav_CT_G Location: 15 107-15 5 33 bp Feature: gene Location: 15625-17436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15889-16711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 889-16711 bp Feature: domain Description: Intron_maturas2 Location: 16786-17101 bp Feature: domain Description: Intron_maturas2 Location: 16786-17101 bp Feature: domain Description: HNHc Note: nucleases Location: 17257-17407 bp Feature: domain Description: HNHc Note: nucleases Location: 1725 7-17407 bp Feature: gene Location: 17782-17955 bp Feature: gene Location: 17983-19812 bp Feature: domain Description: Bac_Flav_CT_G Location: 17986-19798 bp Feature: domain Description: Bac_Flav_CT_G Location: 17986-19798 bp Feature: gene Location: 20042-20392 bp Feature: domain Description: DUF4133 Location: 20057-20327 bp Feature: domain Description: DUF4133 Location: 2005 7-20327 bp Feature: gene Location: 20404-20646 bp Feature: domain Description: DUF4134 Location: 20551-20641 bp Feature: domain Description: DUF4134 Location: 205 5 1-20641 bp Feature: gene Location: 20651-22300 bp Feature: domain Description: RVT_N Location: 20708-20951 bp Feature: domain Description: RVT_N Location: 20708-2095 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20996-21644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20996-21644 bp Feature: domain Description: GIIM Note: maturase Location: 21701-21932 bp Feature: domain Description: GIIM Note: maturase Location: 21701-21932 bp Feature: gene Location: 22404-22556 bp Feature: gene Location: 22569-22724 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), GIIM (pfam08388)

Seq: WDDU01000025.1 Bacteroides xylanisolvens strain BIOML-A49 scaffold25_size47945, whole genome shotgun sequence (47945 bp)
Overview 1 RT 1: 25162-34624 bp Neighborhood of RT #1 [25162, 34624] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 25162-31899 bp Feature: domain Description: Laminin_G_3 Location: 26623-26701 bp Feature: domain Description: Laminin_G_3 Location: 26 6 23-26 701 bp Feature: domain Description: Laminin_G_3 Location: 27352-27778 bp Feature: domain Description: Laminin_G_3 Location: 27352-27778 bp Feature: gene Location: 32144-32299 bp Feature: gene Location: 32416-33720 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32629-33223 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 326 29-33223 bp Feature: gene Location: 33717-34202 bp Feature: gene Location: 34382-34624 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: WDDU01000002.1 Bacteroides xylanisolvens strain BIOML-A49 scaffold2_size126886, whole genome shotgun sequence (126886 bp)
Overview 1 RT 1: 72672-76506 bp Neighborhood of RT #1 [72672, 76506] Phage_holin_4_1 RVT-DGRs Feature: gene Location: 72672-73142 bp Feature: domain Description: Phage_holin_4_1 Location: 72759-73071 bp Feature: domain Description: Phage_holin_4_1 Location: 7 27 59-7 307 1 bp Feature: gene Location: 73144-73515 bp Feature: gene Location: 73493-74527 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 73703-74315 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7 37 03-7 4315 bp Feature: gene Location: 74784-75128 bp Feature: gene Location: 75172-76506 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), RVT-DGRs

Seq: WDDU01000343.1 Bacteroides xylanisolvens strain BIOML-A49 scaffold343_size2483, whole genome shotgun sequence (2483 bp)
Overview 1 RT 1: 114-2482 bp Neighborhood of RT #1 [114, 2482] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 114-1949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408 -1230 bp Feature: domain Description: Intron_maturas2 Location: 1389-1758 bp Feature: domain Description: Intron_maturas2 Location: 138 9-1758 bp Feature: domain Description: HNHc Note: nucleases Location: 1782-1923 bp Feature: domain Description: HNHc Note: nucleases Location: 178 2-1923 bp Feature: gene Location: 2351-2482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)