myRT

myRT report for GCA_009102165.1_ASM910216v1

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Seq: WDDT01000109.1 Bacteroides xylanisolvens strain BIOML-A48 scaffold109_size17629, whole genome shotgun sequence (17629 bp)
Overview 1 RT 1: 671-13066 bp Neighborhood of RT #1 [671, 13197] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 671-1495 bp Feature: domain Description: PDDEXK_2 Location: 692-1370 bp Feature: domain Description: PDDEXK_2 Location: 692-1 370 bp Feature: gene Location: 1664-3871 bp Feature: gene Location: 4079-5209 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4400-4943 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4400-4943 bp Feature: gene Location: 5260-11301 bp Feature: domain Description: DUF4011 Location: 6490-7003 bp Feature: domain Description: DUF401 1 Location: 6490-7003 bp Feature: domain Description: DEXXQc_SF1 Location: 7342-7771 bp Feature: domain Description: DEXXQc_SF1 Location: 7342-7771 bp Feature: domain Description: DEXXQc_SF1 Location: 8770-9529 bp Feature: domain Description: DEXXQc_SF1 Location: 8770-9529 bp Feature: domain Description: TIGR00376 Location: 9658-10048 bp Feature: domain Description: TIGR00376 Location: 9658-1 0048 bp Feature: domain Description: MTES_1575 Location: 10201-10486 bp Feature: domain Description: MTES_1 575 Location: 1 0201 -1 0486 bp Feature: domain Description: DUF3320 Location: 10816-10951 bp Feature: domain Description: DUF3320 Location: 1 081 6-1 0951 bp Feature: gene Location: 11398-13197 bp Feature: domain Description: rpsA Location: 11467-13066 bp Feature: domain Description: rpsA Location: 1 1 467-1 3066 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: WDDT01000120.1 Bacteroides xylanisolvens strain BIOML-A48 scaffold120_size14997, whole genome shotgun sequence (14997 bp)
Overview 1 RT 1: 29-2343 bp Neighborhood of RT #1 [29, 2372] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 29-994 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 404-947 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 404-947 bp Feature: gene Location: 1009-1416 bp Feature: domain Description: Avd_like Location: 1042-1351 bp Feature: domain Description: Avd_like Location: 1042 -1351 bp Feature: gene Location: 1563-2372 bp Feature: domain Description: DUF1566 Location: 2094-2343 bp Feature: domain Description: DUF1566 Location: 2 094-2 343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: WDDT01000017.1 Bacteroides xylanisolvens strain BIOML-A48 scaffold17_size62796, whole genome shotgun sequence (62796 bp)
Overview 1 RT 1: 46131-50080 bp Neighborhood of RT #1 [46131, 50080] RVT-DGRs Feature: gene Location: 46131-46421 bp Feature: gene Location: 46431-47792 bp Feature: gene Location: 48125-49312 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 48458-49085 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 48458-49085 bp Feature: gene Location: 49275-49703 bp Feature: gene Location: 49700-50080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDT01000001.1 Bacteroides xylanisolvens strain BIOML-A48 scaffold1_size198646, whole genome shotgun sequence (198646 bp)
Overview 1 RT 1: 58772-61980 bp Neighborhood of RT #1 [58772, 61980] RVT-UG27 Feature: gene Location: 58772-59050 bp Feature: gene Location: 59080-59346 bp Feature: gene Location: 59396-60658 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 59588-60224 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 59588-60224 bp Feature: gene Location: 60651-61319 bp Feature: gene Location: 61333-61980 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WDDT01000222.1 Bacteroides xylanisolvens strain BIOML-A48 scaffold222_size4882, whole genome shotgun sequence (4882 bp)
Overview 1 RT 1: 353-3249 bp Neighborhood of RT #1 [353, 3249] RVT-DGRs Feature: gene Location: 353-661 bp Feature: gene Location: 683-940 bp Feature: gene Location: 1016-2344 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1256-1853 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 125 6-185 3 bp Feature: gene Location: 2341-2826 bp Feature: gene Location: 3007-3249 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDT01000029.1 Bacteroides xylanisolvens strain BIOML-A48 scaffold29_size48677, whole genome shotgun sequence (48677 bp)
Overview 1 RT 1: 14436-22724 bp Neighborhood of RT #1 [14436, 22724] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 DUF4134 RVT_N RVT-GII GIIM Feature: gene Location: 14436-15068 bp Feature: domain Description: DUF4141 Location: 14460-14607 bp Feature: domain Description: DUF4141 Location: 1446 0-146 07 bp Feature: gene Location: 15089-15547 bp Feature: domain Description: Bac_Flav_CT_G Location: 15107-15533 bp Feature: domain Description: Bac_Flav_CT_G Location: 15107-15533 bp Feature: gene Location: 15625-17436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15889-16711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15889-16 711 bp Feature: domain Description: Intron_maturas2 Location: 16786-17101 bp Feature: domain Description: Intron_maturas2 Location: 16 786 -17101 bp Feature: domain Description: HNHc Note: nucleases Location: 17257-17407 bp Feature: domain Description: HNHc Note: nucleases Location: 17257-17407 bp Feature: gene Location: 17782-17955 bp Feature: gene Location: 17983-19812 bp Feature: domain Description: Bac_Flav_CT_G Location: 17986-19798 bp Feature: domain Description: Bac_Flav_CT_G Location: 17986 -19798 bp Feature: gene Location: 20042-20392 bp Feature: domain Description: DUF4133 Location: 20057-20327 bp Feature: domain Description: DUF4133 Location: 20057-20327 bp Feature: gene Location: 20404-20646 bp Feature: domain Description: DUF4134 Location: 20551-20641 bp Feature: domain Description: DUF4134 Location: 20551-206 41 bp Feature: gene Location: 20651-22300 bp Feature: domain Description: RVT_N Location: 20708-20951 bp Feature: domain Description: RVT_N Location: 20708-20951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20996-21644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20996 -216 44 bp Feature: domain Description: GIIM Note: maturase Location: 21701-21932 bp Feature: domain Description: GIIM Note: maturase Location: 21701-21932 bp Feature: gene Location: 22404-22556 bp Feature: gene Location: 22569-22724 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), GIIM (pfam08388)

Seq: WDDT01000002.1 Bacteroides xylanisolvens strain BIOML-A48 scaffold2_size165028, whole genome shotgun sequence (165028 bp)
Overview 1 RT 1: 50381-54144 bp Neighborhood of RT #1 [50381, 54215] RVT-DGRs Phage_holin_4_1 Feature: gene Location: 50381-51715 bp Feature: gene Location: 51759-52103 bp Feature: gene Location: 52360-53394 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 52570-53182 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5257 0-53182 bp Feature: gene Location: 53372-53743 bp Feature: gene Location: 53745-54215 bp Feature: domain Description: Phage_holin_4_1 Location: 53832-54144 bp Feature: domain Description: Phage_holin_4_1 Location: 53832-54144 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_holin_4_1 (pfam05105)

Seq: WDDT01000302.1 Bacteroides xylanisolvens strain BIOML-A48 scaffold302_size2483, whole genome shotgun sequence (2483 bp)
Overview 1 RT 1: 114-2482 bp Neighborhood of RT #1 [114, 2482] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 114-1949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408 -1230 bp Feature: domain Description: Intron_maturas2 Location: 1389-1758 bp Feature: domain Description: Intron_maturas2 Location: 138 9-1758 bp Feature: domain Description: HNHc Note: nucleases Location: 1782-1923 bp Feature: domain Description: HNHc Note: nucleases Location: 178 2-1923 bp Feature: gene Location: 2351-2482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDDT01000054.1 Bacteroides xylanisolvens strain BIOML-A48 scaffold54_size34867, whole genome shotgun sequence (34867 bp)
Overview 1 RT 1: 23772-33234 bp Neighborhood of RT #1 [23772, 33234] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 23772-30509 bp Feature: domain Description: Laminin_G_3 Location: 25233-25311 bp Feature: domain Description: Laminin_G_3 Location: 25233-25311 bp Feature: domain Description: Laminin_G_3 Location: 25962-26388 bp Feature: domain Description: Laminin_G_3 Location: 259 62-26388 bp Feature: gene Location: 30754-30909 bp Feature: gene Location: 31026-32330 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31239-31833 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31239 -31833 bp Feature: gene Location: 32327-32812 bp Feature: gene Location: 32992-33234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs