myRT

myRT report for GCA_009102215.1_ASM910221v1

Download annotations/find similar RTs

Seq: WDDS01000121.1 Bacteroides xylanisolvens strain BIOML-A47 scaffold121_size14728, whole genome shotgun sequence (14728 bp)
Overview 1 RT 1: 29-2343 bp Neighborhood of RT #1 [29, 2372] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 29-994 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 404-947 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 404-947 bp Feature: gene Location: 1009-1416 bp Feature: domain Description: Avd_like Location: 1042-1351 bp Feature: domain Description: Avd_like Location: 1 042-1 351 bp Feature: gene Location: 1563-2372 bp Feature: domain Description: DUF1566 Location: 2094-2343 bp Feature: domain Description: DUF1 566 Location: 2094-2343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: WDDS01000001.1 Bacteroides xylanisolvens strain BIOML-A47 scaffold1_size198646, whole genome shotgun sequence (198646 bp)
Overview 1 RT 1: 58772-61980 bp Neighborhood of RT #1 [58772, 61980] RVT-UG27 Feature: gene Location: 58772-59050 bp Feature: gene Location: 59080-59346 bp Feature: gene Location: 59396-60658 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 59588-60224 bp Feature: RT Description: RVT-UG2 7 Note: UG2 7 RT Location: 59588-602 2 4 bp Feature: gene Location: 60651-61319 bp Feature: gene Location: 61333-61980 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WDDS01000022.1 Bacteroides xylanisolvens strain BIOML-A47 scaffold22_size67185, whole genome shotgun sequence (67185 bp)
Overview 1 RT 1: 50520-54469 bp Neighborhood of RT #1 [50520, 54469] RVT-DGRs Feature: gene Location: 50520-50810 bp Feature: gene Location: 50820-52181 bp Feature: gene Location: 52514-53701 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 52847-53474 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 52847-53 474 bp Feature: gene Location: 53664-54092 bp Feature: gene Location: 54089-54469 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDS01000235.1 Bacteroides xylanisolvens strain BIOML-A47 scaffold235_size3997, whole genome shotgun sequence (3997 bp)
Overview 1 RT 1: 131-2364 bp Neighborhood of RT #1 [131, 2364] RVT-DGRs Feature: gene Location: 131-1459 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 371-968 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 371-968 bp Feature: gene Location: 1456-1941 bp Feature: gene Location: 2122-2364 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDS01000025.1 Bacteroides xylanisolvens strain BIOML-A47 scaffold25_size56207, whole genome shotgun sequence (56207 bp)
Overview 1 RT 1: 14371-22659 bp Neighborhood of RT #1 [14371, 22659] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 DUF4134 RVT_N RVT-GII GIIM Feature: gene Location: 14371-15003 bp Feature: domain Description: DUF4141 Location: 14395-14542 bp Feature: domain Description: DUF4141 Location: 14395 -145 42 bp Feature: gene Location: 15024-15482 bp Feature: domain Description: Bac_Flav_CT_G Location: 15042-15468 bp Feature: domain Description: Bac_Flav_CT_G Location: 15 042-15 468 bp Feature: gene Location: 15560-17371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15824-16646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 824-16646 bp Feature: domain Description: Intron_maturas2 Location: 16721-17036 bp Feature: domain Description: Intron_maturas2 Location: 16721-17036 bp Feature: domain Description: HNHc Note: nucleases Location: 17192-17342 bp Feature: domain Description: HNHc Note: nucleases Location: 17192-17342 bp Feature: gene Location: 17717-17890 bp Feature: gene Location: 17918-19747 bp Feature: domain Description: Bac_Flav_CT_G Location: 17921-19733 bp Feature: domain Description: Bac_Flav_CT_G Location: 17921-19733 bp Feature: gene Location: 19977-20327 bp Feature: domain Description: DUF4133 Location: 19992-20262 bp Feature: domain Description: DUF4133 Location: 19992-20262 bp Feature: gene Location: 20339-20581 bp Feature: domain Description: DUF4134 Location: 20486-20576 bp Feature: domain Description: DUF4134 Location: 20486-205 76 bp Feature: gene Location: 20586-22235 bp Feature: domain Description: RVT_N Location: 20643-20886 bp Feature: domain Description: RVT_N Location: 20643-20886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20931-21579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20931-215 79 bp Feature: domain Description: GIIM Note: maturase Location: 21636-21867 bp Feature: domain Description: GIIM Note: maturase Location: 21636-21867 bp Feature: gene Location: 22339-22491 bp Feature: gene Location: 22504-22659 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), GIIM (pfam08388)

Seq: WDDS01000291.1 Bacteroides xylanisolvens strain BIOML-A47 scaffold291_size2483, whole genome shotgun sequence (2483 bp)
Overview 1 RT 1: 114-2482 bp Neighborhood of RT #1 [114, 2482] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 114-1949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1230 bp Feature: domain Description: Intron_maturas2 Location: 1389-1758 bp Feature: domain Description: Intron_maturas2 Location: 1389-1758 bp Feature: domain Description: HNHc Note: nucleases Location: 1782-1923 bp Feature: domain Description: HNHc Note: nucleases Location: 1782-1923 bp Feature: gene Location: 2351-2482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDDS01000002.1 Bacteroides xylanisolvens strain BIOML-A47 scaffold2_size166105, whole genome shotgun sequence (166105 bp)
Overview 1 RT 1: 50381-54144 bp Neighborhood of RT #1 [50381, 54215] RVT-DGRs Phage_holin_4_1 Feature: gene Location: 50381-51715 bp Feature: gene Location: 51759-52103 bp Feature: gene Location: 52360-53394 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 52570-53182 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5257 0-53182 bp Feature: gene Location: 53372-53743 bp Feature: gene Location: 53745-54215 bp Feature: domain Description: Phage_holin_4_1 Location: 53832-54144 bp Feature: domain Description: Phage_holin_4_1 Location: 53832-54144 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_holin_4_1 (pfam05105)

Seq: WDDS01000054.1 Bacteroides xylanisolvens strain BIOML-A47 scaffold54_size34867, whole genome shotgun sequence (34867 bp)
Overview 1 RT 1: 23772-33234 bp Neighborhood of RT #1 [23772, 33234] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 23772-30509 bp Feature: domain Description: Laminin_G_3 Location: 25233-25311 bp Feature: domain Description: Laminin_G_3 Location: 25233-25311 bp Feature: domain Description: Laminin_G_3 Location: 25962-26388 bp Feature: domain Description: Laminin_G_3 Location: 25962-2638 8 bp Feature: gene Location: 30754-30909 bp Feature: gene Location: 31026-32330 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31239-31833 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31239-318 33 bp Feature: gene Location: 32327-32812 bp Feature: gene Location: 32992-33234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: WDDS01000056.1 Bacteroides xylanisolvens strain BIOML-A47 scaffold56_size32722, whole genome shotgun sequence (32722 bp)
Overview 1 RT 1: 4433-16834 bp Neighborhood of RT #1 [4433, 16959] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons PDDEXK_2 Feature: gene Location: 4433-6232 bp Feature: domain Description: rpsA Location: 4502-6101 bp Feature: domain Description: rpsA Location: 4502-6101 bp Feature: gene Location: 6329-12370 bp Feature: domain Description: DUF4011 Location: 7559-8072 bp Feature: domain Description: DUF4011 Location: 7559 -8072 bp Feature: domain Description: DEXXQc_SF1 Location: 8411-8840 bp Feature: domain Description: DEXXQc_SF1 Location: 8411-8840 bp Feature: domain Description: DEXXQc_SF1 Location: 9839-10598 bp Feature: domain Description: DEXXQc_SF1 Location: 9 839 -1059 8 bp Feature: domain Description: TIGR00376 Location: 10727-11117 bp Feature: domain Description: TIGR00376 Location: 10727-11117 bp Feature: domain Description: MTES_1575 Location: 11270-11555 bp Feature: domain Description: MTES_1575 Location: 11270-11555 bp Feature: domain Description: DUF3320 Location: 11885-12020 bp Feature: domain Description: DUF3320 Location: 11885-12020 bp Feature: gene Location: 12421-13551 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12742-13285 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12742-13285 bp Feature: gene Location: 13759-15966 bp Feature: gene Location: 16135-16959 bp Feature: domain Description: PDDEXK_2 Location: 16156-16834 bp Feature: domain Description: PDDEXK_2 Location: 16156-16834 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, PDDEXK_2 (pfam12784)