myRT

myRT report for GCA_009102225.1_ASM910222v1

Download annotations/find similar RTs

Seq: WDDR01000010.1 Bacteroides xylanisolvens strain BIOML-A46 scaffold10_size167452, whole genome shotgun sequence (167452 bp)
Overview 1 RT 1: 50381-54144 bp Neighborhood of RT #1 [50381, 54215] RVT-DGRs Phage_holin_4_1 Feature: gene Location: 50381-51715 bp Feature: gene Location: 51759-52103 bp Feature: gene Location: 52360-53394 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 52570-53182 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 52570-531 82 bp Feature: gene Location: 53372-53743 bp Feature: gene Location: 53745-54215 bp Feature: domain Description: Phage_holin_4_1 Location: 53832-54144 bp Feature: domain Description: Phage_holin_4_1 Location: 53832-541 44 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_holin_4_1 (pfam05105)

Seq: WDDR01000162.1 Bacteroides xylanisolvens strain BIOML-A46 scaffold162_size2483, whole genome shotgun sequence (2483 bp)
Overview 1 RT 1: 114-2482 bp Neighborhood of RT #1 [114, 2482] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 114-1949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-12 30 bp Feature: domain Description: Intron_maturas2 Location: 1389-1758 bp Feature: domain Description: Intron_maturas2 Location: 1389-1758 bp Feature: domain Description: HNHc Note: nucleases Location: 1782-1923 bp Feature: domain Description: HNHc Note: nucleases Location: 1782 -192 3 bp Feature: gene Location: 2351-2482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDDR01000029.1 Bacteroides xylanisolvens strain BIOML-A46 scaffold29_size62809, whole genome shotgun sequence (62721 bp)
Overview 1 RT 1: 60350-62646 bp Neighborhood of RT #1 [60350, 62693] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 60350-61159 bp Feature: domain Description: DUF1566 Location: 60881-61130 bp Feature: domain Description: DUF1566 Location: 60881-6113 0 bp Feature: gene Location: 61306-61713 bp Feature: domain Description: Avd_like Location: 61339-61648 bp Feature: domain Description: Avd_like Location: 613 3 9-61648 bp Feature: gene Location: 61728-62693 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 62103-62646 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 62103 -62646 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: WDDR01000002.1 Bacteroides xylanisolvens strain BIOML-A46 scaffold2_size200298, whole genome shotgun sequence (200220 bp)
Overview 1 RT 1: 60346-63554 bp Neighborhood of RT #1 [60346, 63554] RVT-UG27 Feature: gene Location: 60346-60624 bp Feature: gene Location: 60654-60920 bp Feature: gene Location: 60970-62232 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 61162-61798 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 61162-61798 bp Feature: gene Location: 62225-62893 bp Feature: gene Location: 62907-63554 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WDDR01000034.1 Bacteroides xylanisolvens strain BIOML-A46 scaffold34_size56455, whole genome shotgun sequence (56455 bp)
Overview 1 RT 1: 14436-22724 bp Neighborhood of RT #1 [14436, 22724] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 DUF4134 RVT_N RVT-GII GIIM Feature: gene Location: 14436-15068 bp Feature: domain Description: DUF4141 Location: 14460-14607 bp Feature: domain Description: DUF4141 Location: 14460-14607 bp Feature: gene Location: 15089-15547 bp Feature: domain Description: Bac_Flav_CT_G Location: 15107-15533 bp Feature: domain Description: Bac_Flav_CT_G Location: 15 107-15 5 33 bp Feature: gene Location: 15625-17436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15889-16711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 889-16711 bp Feature: domain Description: Intron_maturas2 Location: 16786-17101 bp Feature: domain Description: Intron_maturas2 Location: 16786-17101 bp Feature: domain Description: HNHc Note: nucleases Location: 17257-17407 bp Feature: domain Description: HNHc Note: nucleases Location: 1725 7-17407 bp Feature: gene Location: 17782-17955 bp Feature: gene Location: 17983-19812 bp Feature: domain Description: Bac_Flav_CT_G Location: 17986-19798 bp Feature: domain Description: Bac_Flav_CT_G Location: 17986-19798 bp Feature: gene Location: 20042-20392 bp Feature: domain Description: DUF4133 Location: 20057-20327 bp Feature: domain Description: DUF4133 Location: 2005 7-20327 bp Feature: gene Location: 20404-20646 bp Feature: domain Description: DUF4134 Location: 20551-20641 bp Feature: domain Description: DUF4134 Location: 205 5 1-20641 bp Feature: gene Location: 20651-22300 bp Feature: domain Description: RVT_N Location: 20708-20951 bp Feature: domain Description: RVT_N Location: 20708-2095 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20996-21644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20996-21644 bp Feature: domain Description: GIIM Note: maturase Location: 21701-21932 bp Feature: domain Description: GIIM Note: maturase Location: 21701-21932 bp Feature: gene Location: 22404-22556 bp Feature: gene Location: 22569-22724 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), GIIM (pfam08388)

Seq: WDDR01000003.1 Bacteroides xylanisolvens strain BIOML-A46 scaffold3_size179490, whole genome shotgun sequence (179490 bp)
Overview 1 RT 1: 162825-166774 bp Neighborhood of RT #1 [162825, 166774] RVT-DGRs Feature: gene Location: 162825-163115 bp Feature: gene Location: 163125-164486 bp Feature: gene Location: 164819-166006 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 165152-165779 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 16 5152-16 5779 bp Feature: gene Location: 165969-166397 bp Feature: gene Location: 166394-166774 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDR01000045.1 Bacteroides xylanisolvens strain BIOML-A46 scaffold45_size47009, whole genome shotgun sequence (47009 bp)
Overview 1 RT 1: 24009-33471 bp Neighborhood of RT #1 [24009, 33471] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 24009-30746 bp Feature: domain Description: Laminin_G_3 Location: 25470-25548 bp Feature: domain Description: Laminin_G_3 Location: 2547 0-25548 bp Feature: domain Description: Laminin_G_3 Location: 26199-26625 bp Feature: domain Description: Laminin_G_3 Location: 26199-26625 bp Feature: gene Location: 30991-31146 bp Feature: gene Location: 31263-32567 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31476-32070 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3147 6-3207 0 bp Feature: gene Location: 32564-33049 bp Feature: gene Location: 33229-33471 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: WDDR01000063.1 Bacteroides xylanisolvens strain BIOML-A46 scaffold63_size35015, whole genome shotgun sequence (35015 bp)
Overview 1 RT 1: 1022-3918 bp Neighborhood of RT #1 [1022, 3918] RVT-DGRs Feature: gene Location: 1022-1330 bp Feature: gene Location: 1352-1609 bp Feature: gene Location: 1685-3013 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1925-2522 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1925-2522 bp Feature: gene Location: 3010-3495 bp Feature: gene Location: 3676-3918 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDR01000071.1 Bacteroides xylanisolvens strain BIOML-A46 scaffold71_size30749, whole genome shotgun sequence (30749 bp)
Overview 1 RT 1: 1-1966 bp Neighborhood of RT #1 [1, 1966] RVT-DGRs Feature: gene Location: 1-1056 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4-565 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4-565 bp Feature: gene Location: 1053-1538 bp Feature: gene Location: 1724-1966 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDR01000094.1 Bacteroides xylanisolvens strain BIOML-A46 scaffold94_size20232, whole genome shotgun sequence (20232 bp)
Overview 1 RT 1: 1-1984 bp Neighborhood of RT #1 [1, 1984] RVT-DGRs Feature: gene Location: 1-1056 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4-565 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4-565 bp Feature: gene Location: 1053-1538 bp Feature: gene Location: 1742-1984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDR01000096.1 Bacteroides xylanisolvens strain BIOML-A46 scaffold96_size18248, whole genome shotgun sequence (18248 bp)
Overview 1 RT 1: 1290-13685 bp Neighborhood of RT #1 [1290, 13816] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 1290-2114 bp Feature: domain Description: PDDEXK_2 Location: 1311-1989 bp Feature: domain Description: PDDEXK_2 Location: 1311 -1989 bp Feature: gene Location: 2283-4490 bp Feature: gene Location: 4698-5828 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5019-5562 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5019-5562 bp Feature: gene Location: 5879-11920 bp Feature: domain Description: DUF4011 Location: 7109-7622 bp Feature: domain Description: DUF4011 Location: 7109-7622 bp Feature: domain Description: DEXXQc_SF1 Location: 7961-8390 bp Feature: domain Description: DEXXQc_SF1 Location: 7961-8390 bp Feature: domain Description: DEXXQc_SF1 Location: 9389-10148 bp Feature: domain Description: DEXXQc_SF1 Location: 9389-10148 bp Feature: domain Description: TIGR00376 Location: 10277-10667 bp Feature: domain Description: TIGR00376 Location: 10277-10667 bp Feature: domain Description: MTES_1575 Location: 10820-11105 bp Feature: domain Description: MTES_1575 Location: 10820-11 105 bp Feature: domain Description: DUF3320 Location: 11435-11570 bp Feature: domain Description: DUF3320 Location: 11 435-11 570 bp Feature: gene Location: 12017-13816 bp Feature: domain Description: rpsA Location: 12086-13685 bp Feature: domain Description: rpsA Location: 12086-13685 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)