myRT

myRT report for GCA_009102245.1_ASM910224v1

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Seq: WDDP01000100.1 Bacteroides xylanisolvens strain BIOML-A43 scaffold100_size18271, whole genome shotgun sequence (18271 bp)
Overview 1 RT 1: 4621-17022 bp Neighborhood of RT #1 [4621, 17147] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons PDDEXK_2 Feature: gene Location: 4621-6420 bp Feature: domain Description: rpsA Location: 4690-6289 bp Feature: domain Description: rpsA Location: 4690-6289 bp Feature: gene Location: 6517-12558 bp Feature: domain Description: DUF4011 Location: 7747-8260 bp Feature: domain Description: DUF401 1 Location: 7747-8260 bp Feature: domain Description: DEXXQc_SF1 Location: 8599-9028 bp Feature: domain Description: DEXXQc_SF1 Location: 8599-9028 bp Feature: domain Description: DEXXQc_SF1 Location: 10027-10786 bp Feature: domain Description: DEXXQc_SF1 Location: 1 0027-1 0786 bp Feature: domain Description: TIGR00376 Location: 10915-11305 bp Feature: domain Description: TIGR00376 Location: 1 091 5-1 1 305 bp Feature: domain Description: MTES_1575 Location: 11458-11743 bp Feature: domain Description: MTES_1 575 Location: 1 1 458-1 1 743 bp Feature: domain Description: DUF3320 Location: 12073-12208 bp Feature: domain Description: DUF3320 Location: 1 2073-1 2208 bp Feature: gene Location: 12609-13739 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12930-13473 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 2930-1 3473 bp Feature: gene Location: 13947-16154 bp Feature: gene Location: 16323-17147 bp Feature: domain Description: PDDEXK_2 Location: 16344-17022 bp Feature: domain Description: PDDEXK_2 Location: 1 6344-1 7022 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, PDDEXK_2 (pfam12784)

Seq: WDDP01000109.1 Bacteroides xylanisolvens strain BIOML-A43 scaffold109_size16033, whole genome shotgun sequence (16033 bp)
Overview 1 RT 1: 13662-15958 bp Neighborhood of RT #1 [13662, 16005] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 13662-14471 bp Feature: domain Description: DUF1566 Location: 14193-14442 bp Feature: domain Description: DUF1566 Location: 14193-14442 bp Feature: gene Location: 14618-15025 bp Feature: domain Description: Avd_like Location: 14651-14960 bp Feature: domain Description: Avd_like Location: 14651-14960 bp Feature: gene Location: 15040-16005 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 15415-15958 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 15415-15958 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: WDDP01000001.1 Bacteroides xylanisolvens strain BIOML-A43 scaffold1_size198451, whole genome shotgun sequence (198451 bp)
Overview 1 RT 1: 58577-61785 bp Neighborhood of RT #1 [58577, 61785] RVT-UG27 Feature: gene Location: 58577-58855 bp Feature: gene Location: 58885-59151 bp Feature: gene Location: 59201-60463 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 59393-60029 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 593 93 -60029 bp Feature: gene Location: 60456-61124 bp Feature: gene Location: 61138-61785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WDDP01000029.1 Bacteroides xylanisolvens strain BIOML-A43 scaffold29_size46772, whole genome shotgun sequence (46772 bp)
Overview 1 RT 1: 23772-33234 bp Neighborhood of RT #1 [23772, 33234] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 23772-30509 bp Feature: domain Description: Laminin_G_3 Location: 25233-25311 bp Feature: domain Description: Laminin_G_3 Location: 25233-25311 bp Feature: domain Description: Laminin_G_3 Location: 25962-26388 bp Feature: domain Description: Laminin_G_3 Location: 25962-26388 bp Feature: gene Location: 30754-30909 bp Feature: gene Location: 31026-32330 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31239-31833 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31239-31833 bp Feature: gene Location: 32327-32812 bp Feature: gene Location: 32992-33234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: WDDP01000323.1 Bacteroides xylanisolvens strain BIOML-A43 scaffold323_size2483, whole genome shotgun sequence (2483 bp)
Overview 1 RT 1: 114-2482 bp Neighborhood of RT #1 [114, 2482] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 114-1949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1230 bp Feature: domain Description: Intron_maturas2 Location: 1389-1758 bp Feature: domain Description: Intron_maturas2 Location: 1389-175 8 bp Feature: domain Description: HNHc Note: nucleases Location: 1782-1923 bp Feature: domain Description: HNHc Note: nucleases Location: 1782-1923 bp Feature: gene Location: 2351-2482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDDP01000057.1 Bacteroides xylanisolvens strain BIOML-A43 scaffold57_size33342, whole genome shotgun sequence (33342 bp)
Overview 1 RT 1: 30979-32721 bp Neighborhood of RT #1 [30979, 33212] RVT-DGRs Feature: gene Location: 30979-31221 bp Feature: gene Location: 31402-31887 bp Feature: gene Location: 31884-33212 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32124-32721 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32124-32721 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDP01000061.1 Bacteroides xylanisolvens strain BIOML-A43 scaffold61_size30887, whole genome shotgun sequence (30887 bp)
Overview 1 RT 1: 14436-22831 bp Neighborhood of RT #1 [14436, 22831] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 DUF4134 RVT_N RVT-GII GIIM Feature: gene Location: 14436-15068 bp Feature: domain Description: DUF4141 Location: 14460-14607 bp Feature: domain Description: DUF4141 Location: 14460-14607 bp Feature: gene Location: 15089-15547 bp Feature: domain Description: Bac_Flav_CT_G Location: 15107-15533 bp Feature: domain Description: Bac_Flav_CT_G Location: 15107 -15533 bp Feature: gene Location: 15625-17436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15889-16711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15889-167 11 bp Feature: domain Description: Intron_maturas2 Location: 16786-17101 bp Feature: domain Description: Intron_maturas2 Location: 167 86-17 101 bp Feature: domain Description: HNHc Note: nucleases Location: 17257-17407 bp Feature: domain Description: HNHc Note: nucleases Location: 17 257 -17 407 bp Feature: gene Location: 17782-17955 bp Feature: gene Location: 17983-19812 bp Feature: domain Description: Bac_Flav_CT_G Location: 17986-19798 bp Feature: domain Description: Bac_Flav_CT_G Location: 17 986-197 98 bp Feature: gene Location: 20042-20392 bp Feature: domain Description: DUF4133 Location: 20057-20327 bp Feature: domain Description: DUF4133 Location: 20057 -20327 bp Feature: gene Location: 20404-20646 bp Feature: domain Description: DUF4134 Location: 20551-20641 bp Feature: domain Description: DUF4134 Location: 20551-20641 bp Feature: gene Location: 20651-22300 bp Feature: domain Description: RVT_N Location: 20708-20951 bp Feature: domain Description: RVT_N Location: 207 08-20951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20996-21644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20996-21644 bp Feature: domain Description: GIIM Note: maturase Location: 21701-21932 bp Feature: domain Description: GIIM Note: maturase Location: 217 01-21932 bp Feature: gene Location: 22404-22556 bp Feature: gene Location: 22580-22831 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), GIIM (pfam08388)

Seq: WDDP01000008.1 Bacteroides xylanisolvens strain BIOML-A43 scaffold8_size93497, whole genome shotgun sequence (93497 bp)
Overview 1 RT 1: 12717-16366 bp Neighborhood of RT #1 [12717, 16366] RVT-DGRs Feature: gene Location: 12717-13097 bp Feature: gene Location: 13094-13522 bp Feature: gene Location: 13485-14672 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13818-14445 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 138 18 -14445 bp Feature: gene Location: 14794-14931 bp Feature: gene Location: 15005-16366 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDP01000009.1 Bacteroides xylanisolvens strain BIOML-A43 scaffold9_size89497, whole genome shotgun sequence (89497 bp)
Overview 1 RT 1: 35283-39117 bp Neighborhood of RT #1 [35283, 39117] Phage_holin_4_1 RVT-DGRs Feature: gene Location: 35283-35753 bp Feature: domain Description: Phage_holin_4_1 Location: 35370-35682 bp Feature: domain Description: Phage_holin_4_1 Location: 35370-35682 bp Feature: gene Location: 35755-36126 bp Feature: gene Location: 36104-37138 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 36314-36926 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 36314-369 26 bp Feature: gene Location: 37395-37739 bp Feature: gene Location: 37783-39117 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), RVT-DGRs