myRT

myRT report for GCA_009102265.1_ASM910226v1

Download annotations/find similar RTs

Seq: WDDQ01000116.1 Bacteroides xylanisolvens strain BIOML-A45 scaffold116_size13573, whole genome shotgun sequence (13573 bp)
Overview 1 RT 1: 23-9010 bp Neighborhood of RT #1 [23, 9141] RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 23-1153 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 344-887 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 344-887 bp Feature: gene Location: 1204-7245 bp Feature: domain Description: DUF4011 Location: 2434-2947 bp Feature: domain Description: DUF401 1 Location: 2434-2947 bp Feature: domain Description: DEXXQc_SF1 Location: 3286-3715 bp Feature: domain Description: DEXXQc_SF1 Location: 3286-371 5 bp Feature: domain Description: DEXXQc_SF1 Location: 4714-5473 bp Feature: domain Description: DEXXQc_SF1 Location: 471 4-5473 bp Feature: domain Description: TIGR00376 Location: 5602-5992 bp Feature: domain Description: TIGR00376 Location: 5602-5992 bp Feature: domain Description: MTES_1575 Location: 6145-6430 bp Feature: domain Description: MTES_1 575 Location: 61 45-6430 bp Feature: domain Description: DUF3320 Location: 6760-6895 bp Feature: domain Description: DUF3320 Location: 6760-6895 bp Feature: gene Location: 7342-9141 bp Feature: domain Description: rpsA Location: 7411-9010 bp Feature: domain Description: rpsA Location: 741 1 -901 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: WDDQ01000127.1 Bacteroides xylanisolvens strain BIOML-A45 scaffold127_size12273, whole genome shotgun sequence (12273 bp)
Overview 1 RT 1: 29-2343 bp Neighborhood of RT #1 [29, 2372] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 29-994 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 404-947 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 404-947 bp Feature: gene Location: 1009-1416 bp Feature: domain Description: Avd_like Location: 1042-1351 bp Feature: domain Description: Avd_like Location: 1042 -1351 bp Feature: gene Location: 1563-2372 bp Feature: domain Description: DUF1566 Location: 2094-2343 bp Feature: domain Description: DUF1566 Location: 2 094-2 343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: WDDQ01000013.1 Bacteroides xylanisolvens strain BIOML-A45 scaffold13_size47741, whole genome shotgun sequence (47741 bp)
Overview 1 RT 1: 14436-22724 bp Neighborhood of RT #1 [14436, 22724] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 DUF4134 RVT_N RVT-GII GIIM Feature: gene Location: 14436-15068 bp Feature: domain Description: DUF4141 Location: 14460-14607 bp Feature: domain Description: DUF4141 Location: 14460-14607 bp Feature: gene Location: 15089-15547 bp Feature: domain Description: Bac_Flav_CT_G Location: 15107-15533 bp Feature: domain Description: Bac_Flav_CT_G Location: 15107-1553 3 bp Feature: gene Location: 15625-17436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15889-16711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15889-16711 bp Feature: domain Description: Intron_maturas2 Location: 16786-17101 bp Feature: domain Description: Intron_maturas2 Location: 16786-17101 bp Feature: domain Description: HNHc Note: nucleases Location: 17257-17407 bp Feature: domain Description: HNHc Note: nucleases Location: 17257-17407 bp Feature: gene Location: 17782-17955 bp Feature: gene Location: 17983-19812 bp Feature: domain Description: Bac_Flav_CT_G Location: 17986-19798 bp Feature: domain Description: Bac_Flav_CT_G Location: 17986-19798 bp Feature: gene Location: 20042-20392 bp Feature: domain Description: DUF4133 Location: 20057-20327 bp Feature: domain Description: DUF413 3 Location: 20057-203 27 bp Feature: gene Location: 20404-20646 bp Feature: domain Description: DUF4134 Location: 20551-20641 bp Feature: domain Description: DUF413 4 Location: 20551-20641 bp Feature: gene Location: 20651-22300 bp Feature: domain Description: RVT_N Location: 20708-20951 bp Feature: domain Description: RVT_N Location: 20708-20951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20996-21644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20996-21644 bp Feature: domain Description: GIIM Note: maturase Location: 21701-21932 bp Feature: domain Description: GIIM Note: maturase Location: 21701-2193 2 bp Feature: gene Location: 22404-22556 bp Feature: gene Location: 22569-22724 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), GIIM (pfam08388)

Seq: WDDQ01000014.1 Bacteroides xylanisolvens strain BIOML-A45 scaffold14_size44207, whole genome shotgun sequence (44207 bp)
Overview 1 RT 1: 23772-33234 bp Neighborhood of RT #1 [23772, 33234] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 23772-30509 bp Feature: domain Description: Laminin_G_3 Location: 25233-25311 bp Feature: domain Description: Laminin_G_3 Location: 25233-25311 bp Feature: domain Description: Laminin_G_3 Location: 25962-26388 bp Feature: domain Description: Laminin_G_3 Location: 25962-26388 bp Feature: gene Location: 30754-30909 bp Feature: gene Location: 31026-32330 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31239-31833 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31239-31833 bp Feature: gene Location: 32327-32812 bp Feature: gene Location: 32992-33234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: WDDQ01000001.1 Bacteroides xylanisolvens strain BIOML-A45 scaffold1_size186206, whole genome shotgun sequence (186206 bp)
Overview 1 RT 1: 136667-140600 bp Neighborhood of RT #1 [136667, 140600] RVT-UG27 Feature: gene Location: 136667-137314 bp Feature: gene Location: 137328-137996 bp Feature: gene Location: 137989-139251 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 138181-138817 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 138181-138817 bp Feature: gene Location: 139574-140071 bp Feature: gene Location: 140121-140600 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WDDQ01000025.1 Bacteroides xylanisolvens strain BIOML-A45 scaffold25_size34974, whole genome shotgun sequence (34974 bp)
Overview 1 RT 1: 31057-33953 bp Neighborhood of RT #1 [31057, 33953] RVT-DGRs Feature: gene Location: 31057-31299 bp Feature: gene Location: 31480-31965 bp Feature: gene Location: 31962-33290 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32202-32799 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32202-32799 bp Feature: gene Location: 33366-33623 bp Feature: gene Location: 33645-33953 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDQ01000028.1 Bacteroides xylanisolvens strain BIOML-A45 scaffold28_size34432, whole genome shotgun sequence (34432 bp)
Overview 1 RT 1: 24140-28089 bp Neighborhood of RT #1 [24140, 28089] RVT-DGRs Feature: gene Location: 24140-24430 bp Feature: gene Location: 24440-25801 bp Feature: gene Location: 26134-27321 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 26467-27094 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 26467 -27 094 bp Feature: gene Location: 27284-27712 bp Feature: gene Location: 27709-28089 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDQ01000484.1 Bacteroides xylanisolvens strain BIOML-A45 scaffold484_size2483, whole genome shotgun sequence (2483 bp)
Overview 1 RT 1: 114-2482 bp Neighborhood of RT #1 [114, 2482] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 114-1949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408 -1230 bp Feature: domain Description: Intron_maturas2 Location: 1389-1758 bp Feature: domain Description: Intron_maturas2 Location: 138 9-1758 bp Feature: domain Description: HNHc Note: nucleases Location: 1782-1923 bp Feature: domain Description: HNHc Note: nucleases Location: 178 2-1923 bp Feature: gene Location: 2351-2482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDDQ01000004.1 Bacteroides xylanisolvens strain BIOML-A45 scaffold4_size84229, whole genome shotgun sequence (84229 bp)
Overview 1 RT 1: 30015-33849 bp Neighborhood of RT #1 [30015, 33849] Phage_holin_4_1 RVT-DGRs Feature: gene Location: 30015-30485 bp Feature: domain Description: Phage_holin_4_1 Location: 30102-30414 bp Feature: domain Description: Phage_holin_4_1 Location: 30102-30414 bp Feature: gene Location: 30487-30858 bp Feature: gene Location: 30836-31870 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31046-31658 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31046-31658 bp Feature: gene Location: 32127-32471 bp Feature: gene Location: 32515-33849 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), RVT-DGRs