myRT

myRT report for GCA_009102285.1_ASM910228v1

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Seq: WDDO01000117.1 Bacteroides xylanisolvens strain BIOML-A42 scaffold117_size14130, whole genome shotgun sequence (14130 bp)
Overview 1 RT 1: 29-2343 bp Neighborhood of RT #1 [29, 2372] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 29-994 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 404-947 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 404-947 bp Feature: gene Location: 1009-1416 bp Feature: domain Description: Avd_like Location: 1042-1351 bp Feature: domain Description: Avd_like Location: 1 042-1 351 bp Feature: gene Location: 1563-2372 bp Feature: domain Description: DUF1566 Location: 2094-2343 bp Feature: domain Description: DUF1 566 Location: 2094-2343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: WDDO01000001.1 Bacteroides xylanisolvens strain BIOML-A42 scaffold1_size198646, whole genome shotgun sequence (198646 bp)
Overview 1 RT 1: 58772-61980 bp Neighborhood of RT #1 [58772, 61980] RVT-UG27 Feature: gene Location: 58772-59050 bp Feature: gene Location: 59080-59346 bp Feature: gene Location: 59396-60658 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 59588-60224 bp Feature: RT Description: RVT-UG2 7 Note: UG2 7 RT Location: 59588-602 2 4 bp Feature: gene Location: 60651-61319 bp Feature: gene Location: 61333-61980 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WDDO01000020.1 Bacteroides xylanisolvens strain BIOML-A42 scaffold20_size56231, whole genome shotgun sequence (56231 bp)
Overview 1 RT 1: 33148-41335 bp Neighborhood of RT #1 [33148, 41796] DUF4134 RVT_N RVT-GII GIIM DUF4134 DUF4133 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4141 Feature: gene Location: 33148-33330 bp Feature: domain Description: DUF4134 Location: 33157-33307 bp Feature: domain Description: DUF413 4 Location: 3 3 157-3 3 3 07 bp Feature: gene Location: 33401-33652 bp Feature: gene Location: 33932-35581 bp Feature: domain Description: RVT_N Location: 33989-34232 bp Feature: domain Description: RVT_N Location: 3 3 989-3 423 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34277-34925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 4277-3 4925 bp Feature: domain Description: GIIM Note: maturase Location: 34982-35213 bp Feature: domain Description: GIIM Note: maturase Location: 3 4982-3 5213 bp Feature: gene Location: 35586-35828 bp Feature: domain Description: DUF4134 Location: 35733-35823 bp Feature: domain Description: DUF413 4 Location: 3 573 3 -3 5823 bp Feature: gene Location: 35840-36190 bp Feature: domain Description: DUF4133 Location: 35855-36125 bp Feature: domain Description: DUF413 3 Location: 3 5855-3 6125 bp Feature: gene Location: 36420-38249 bp Feature: domain Description: Bac_Flav_CT_G Location: 36423-38235 bp Feature: domain Description: Bac_Flav_CT_G Location: 3 6423 -3 823 5 bp Feature: gene Location: 38277-38450 bp Feature: gene Location: 38796-40607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39060-39882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 9060-3 9882 bp Feature: domain Description: Intron_maturas2 Location: 39957-40272 bp Feature: domain Description: Intron_maturas2 Location: 3 9957-40272 bp Feature: domain Description: HNHc Note: nucleases Location: 40428-40578 bp Feature: domain Description: HNHc Note: nucleases Location: 40428-40578 bp Feature: gene Location: 40685-41143 bp Feature: domain Description: Bac_Flav_CT_G Location: 40703-41129 bp Feature: domain Description: Bac_Flav_CT_G Location: 40703 -41129 bp Feature: gene Location: 41164-41796 bp Feature: domain Description: DUF4141 Location: 41188-41335 bp Feature: domain Description: DUF4141 Location: 41188-413 3 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4141 (pfam13605)

Seq: WDDO01000027.1 Bacteroides xylanisolvens strain BIOML-A42 scaffold27_size46772, whole genome shotgun sequence (46772 bp)
Overview 1 RT 1: 23772-33234 bp Neighborhood of RT #1 [23772, 33234] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 23772-30509 bp Feature: domain Description: Laminin_G_3 Location: 25233-25311 bp Feature: domain Description: Laminin_G_3 Location: 25233-25311 bp Feature: domain Description: Laminin_G_3 Location: 25962-26388 bp Feature: domain Description: Laminin_G_3 Location: 25962-26388 bp Feature: gene Location: 30754-30909 bp Feature: gene Location: 31026-32330 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31239-31833 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31239-31833 bp Feature: gene Location: 32327-32812 bp Feature: gene Location: 32992-33234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: WDDO01000002.1 Bacteroides xylanisolvens strain BIOML-A42 scaffold2_size159767, whole genome shotgun sequence (159767 bp)
Overview 1 RT 1: 42696-46459 bp Neighborhood of RT #1 [42696, 46530] RVT-DGRs Phage_holin_4_1 Feature: gene Location: 42696-44030 bp Feature: gene Location: 44074-44418 bp Feature: gene Location: 44675-45709 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 44885-45497 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 44885 -45 497 bp Feature: gene Location: 45687-46058 bp Feature: gene Location: 46060-46530 bp Feature: domain Description: Phage_holin_4_1 Location: 46147-46459 bp Feature: domain Description: Phage_holin_4_1 Location: 46147-4645 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_holin_4_1 (pfam05105)

Seq: WDDO01000321.1 Bacteroides xylanisolvens strain BIOML-A42 scaffold321_size2483, whole genome shotgun sequence (2483 bp)
Overview 1 RT 1: 114-2482 bp Neighborhood of RT #1 [114, 2482] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 114-1949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1230 bp Feature: domain Description: Intron_maturas2 Location: 1389-1758 bp Feature: domain Description: Intron_maturas2 Location: 1389-1758 bp Feature: domain Description: HNHc Note: nucleases Location: 1782-1923 bp Feature: domain Description: HNHc Note: nucleases Location: 1782-1923 bp Feature: gene Location: 2351-2482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDDO01000049.1 Bacteroides xylanisolvens strain BIOML-A42 scaffold49_size35015, whole genome shotgun sequence (35015 bp)
Overview 1 RT 1: 31098-33994 bp Neighborhood of RT #1 [31098, 33994] RVT-DGRs Feature: gene Location: 31098-31340 bp Feature: gene Location: 31521-32006 bp Feature: gene Location: 32003-33331 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32243-32840 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32243-32840 bp Feature: gene Location: 33407-33664 bp Feature: gene Location: 33686-33994 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDO01000057.1 Bacteroides xylanisolvens strain BIOML-A42 scaffold57_size30749, whole genome shotgun sequence (30749 bp)
Overview 1 RT 1: 1-1966 bp Neighborhood of RT #1 [1, 1966] RVT-DGRs Feature: gene Location: 1-1056 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4-565 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4-565 bp Feature: gene Location: 1053-1538 bp Feature: gene Location: 1724-1966 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDO01000008.1 Bacteroides xylanisolvens strain BIOML-A42 scaffold8_size100854, whole genome shotgun sequence (100854 bp)
Overview 1 RT 1: 12717-16366 bp Neighborhood of RT #1 [12717, 16366] RVT-DGRs Feature: gene Location: 12717-13097 bp Feature: gene Location: 13094-13522 bp Feature: gene Location: 13485-14672 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13818-14445 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13818-14445 bp Feature: gene Location: 14794-14931 bp Feature: gene Location: 15005-16366 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDO01000096.1 Bacteroides xylanisolvens strain BIOML-A42 scaffold96_size17852, whole genome shotgun sequence (17852 bp)
Overview 1 RT 1: 1-1984 bp Neighborhood of RT #1 [1, 1984] RVT-DGRs Feature: gene Location: 1-1056 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4-565 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4-565 bp Feature: gene Location: 1053-1538 bp Feature: gene Location: 1742-1984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDO01000099.1 Bacteroides xylanisolvens strain BIOML-A42 scaffold99_size17653, whole genome shotgun sequence (17653 bp)
Overview 1 RT 1: 4430-16831 bp Neighborhood of RT #1 [4430, 16956] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons PDDEXK_2 Feature: gene Location: 4430-6229 bp Feature: domain Description: rpsA Location: 4499-6098 bp Feature: domain Description: rpsA Location: 4499-6098 bp Feature: gene Location: 6326-12367 bp Feature: domain Description: DUF4011 Location: 7556-8069 bp Feature: domain Description: DUF4011 Location: 7556-8069 bp Feature: domain Description: DEXXQc_SF1 Location: 8408-8837 bp Feature: domain Description: DEXXQc_SF1 Location: 8408-8837 bp Feature: domain Description: DEXXQc_SF1 Location: 9836-10595 bp Feature: domain Description: DEXXQc_SF1 Location: 9836-10595 bp Feature: domain Description: TIGR00376 Location: 10724-11123 bp Feature: domain Description: TIGR00376 Location: 10724-11 123 bp Feature: domain Description: MTES_1575 Location: 11267-11552 bp Feature: domain Description: MTES_1575 Location: 11 267-11 552 bp Feature: domain Description: DUF3320 Location: 11882-12017 bp Feature: domain Description: DUF3320 Location: 11 882-12017 bp Feature: gene Location: 12418-13548 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12739-13282 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12739-13282 bp Feature: gene Location: 13756-15963 bp Feature: gene Location: 16132-16956 bp Feature: domain Description: PDDEXK_2 Location: 16153-16831 bp Feature: domain Description: PDDEXK_2 Location: 16153-16831 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, PDDEXK_2 (pfam12784)