myRT

myRT report for GCA_009102305.1_ASM910230v1

Download annotations/find similar RTs

Seq: WDDM01000101.1 Bacteroides xylanisolvens strain BIOML-A40 scaffold101_size17653, whole genome shotgun sequence (17653 bp)
Overview 1 RT 1: 4430-16831 bp Neighborhood of RT #1 [4430, 16956] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons PDDEXK_2 Feature: gene Location: 4430-6229 bp Feature: domain Description: rpsA Location: 4499-6098 bp Feature: domain Description: rpsA Location: 4499-6098 bp Feature: gene Location: 6326-12367 bp Feature: domain Description: DUF4011 Location: 7556-8069 bp Feature: domain Description: DUF401 1 Location: 7556-8069 bp Feature: domain Description: DEXXQc_SF1 Location: 8408-8837 bp Feature: domain Description: DEXXQc_SF1 Location: 8408-8837 bp Feature: domain Description: DEXXQc_SF1 Location: 9836-10595 bp Feature: domain Description: DEXXQc_SF1 Location: 9836-1 0595 bp Feature: domain Description: TIGR00376 Location: 10724-11114 bp Feature: domain Description: TIGR00376 Location: 1 0724-1 1 1 1 4 bp Feature: domain Description: MTES_1575 Location: 11267-11552 bp Feature: domain Description: MTES_1 575 Location: 1 1 267-1 1 552 bp Feature: domain Description: DUF3320 Location: 11882-12017 bp Feature: domain Description: DUF3320 Location: 1 1 882-1 201 7 bp Feature: gene Location: 12418-13548 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12739-13282 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 2739-1 3282 bp Feature: gene Location: 13756-15963 bp Feature: gene Location: 16132-16956 bp Feature: domain Description: PDDEXK_2 Location: 16153-16831 bp Feature: domain Description: PDDEXK_2 Location: 1 61 53-1 6831 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, PDDEXK_2 (pfam12784)

Seq: WDDM01000199.1 Bacteroides xylanisolvens strain BIOML-A40 scaffold199_size3506, whole genome shotgun sequence (3506 bp)
Overview 1 RT 1: 258-3154 bp Neighborhood of RT #1 [258, 3154] RVT-DGRs Feature: gene Location: 258-500 bp Feature: gene Location: 681-1166 bp Feature: gene Location: 1163-2491 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1403-2000 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1403-2 000 bp Feature: gene Location: 2567-2824 bp Feature: gene Location: 2846-3154 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDM01000211.1 Bacteroides xylanisolvens strain BIOML-A40 scaffold211_size3839, whole genome shotgun sequence (3839 bp)
Overview 1 RT 1: 1340-3051 bp Neighborhood of RT #1 [1340, 3548] RVT-DGRs Feature: gene Location: 1340-1582 bp Feature: gene Location: 1762-2247 bp Feature: gene Location: 2244-3548 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2457-3051 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2457-3 051 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDM01000216.1 Bacteroides xylanisolvens strain BIOML-A40 scaffold216_size2483, whole genome shotgun sequence (2483 bp)
Overview 1 RT 1: 114-2482 bp Neighborhood of RT #1 [114, 2482] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 114-1949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 08-1230 bp Feature: domain Description: Intron_maturas2 Location: 1389-1758 bp Feature: domain Description: Intron_maturas2 Location: 1389-1758 bp Feature: domain Description: HNHc Note: nucleases Location: 1782-1923 bp Feature: domain Description: HNHc Note: nucleases Location: 1782-1923 bp Feature: gene Location: 2351-2482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDDM01000244.1 Bacteroides xylanisolvens strain BIOML-A40 scaffold244_size1341, whole genome shotgun sequence (1341 bp)
Overview 1 RT 1: 18-828 bp Neighborhood of RT #1 [18, 1319] RVT-DGRs Feature: gene Location: 18-1319 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 231-828 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 231-828 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDM01000024.1 Bacteroides xylanisolvens strain BIOML-A40 scaffold24_size62542, whole genome shotgun sequence (62542 bp)
Overview 1 RT 1: 60171-62467 bp Neighborhood of RT #1 [60171, 62514] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 60171-60980 bp Feature: domain Description: DUF1566 Location: 60702-60951 bp Feature: domain Description: DUF156 6 Location: 6 0702-6 0951 bp Feature: gene Location: 61127-61534 bp Feature: domain Description: Avd_like Location: 61160-61469 bp Feature: domain Description: Avd_like Location: 6 116 0-6 146 9 bp Feature: gene Location: 61549-62514 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 61924-62467 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6 1924-6 246 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: WDDM01000002.1 Bacteroides xylanisolvens strain BIOML-A40 scaffold2_size198460, whole genome shotgun sequence (198460 bp)
Overview 1 RT 1: 136676-140609 bp Neighborhood of RT #1 [136676, 140609] RVT-UG27 Feature: gene Location: 136676-137323 bp Feature: gene Location: 137337-138005 bp Feature: gene Location: 137998-139260 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 138190-138826 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 138190-138826 bp Feature: gene Location: 139583-140080 bp Feature: gene Location: 140130-140609 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WDDM01000030.1 Bacteroides xylanisolvens strain BIOML-A40 scaffold30_size50681, whole genome shotgun sequence (50681 bp)
Overview 1 RT 1: 27598-35785 bp Neighborhood of RT #1 [27598, 36246] DUF4134 RVT_N RVT-GII GIIM DUF4134 DUF4133 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4141 Feature: gene Location: 27598-27780 bp Feature: domain Description: DUF4134 Location: 27607-27757 bp Feature: domain Description: DUF4134 Location: 27607-27757 bp Feature: gene Location: 27851-28102 bp Feature: gene Location: 28382-30031 bp Feature: domain Description: RVT_N Location: 28439-28682 bp Feature: domain Description: RVT_N Location: 28 439-28 68 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28727-29375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28 727-29375 bp Feature: domain Description: GIIM Note: maturase Location: 29432-29663 bp Feature: domain Description: GIIM Note: maturase Location: 29432-29663 bp Feature: gene Location: 30036-30278 bp Feature: domain Description: DUF4134 Location: 30183-30273 bp Feature: domain Description: DUF4134 Location: 3018 3-30273 bp Feature: gene Location: 30290-30640 bp Feature: domain Description: DUF4133 Location: 30305-30575 bp Feature: domain Description: DUF4133 Location: 30305-30575 bp Feature: gene Location: 30870-32699 bp Feature: domain Description: Bac_Flav_CT_G Location: 30873-32685 bp Feature: domain Description: Bac_Flav_CT_G Location: 308 73-3268 5 bp Feature: gene Location: 32727-32900 bp Feature: gene Location: 33246-35057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33510-34332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33510-34332 bp Feature: domain Description: Intron_maturas2 Location: 34407-34722 bp Feature: domain Description: Intron_maturas2 Location: 34407-34722 bp Feature: domain Description: HNHc Note: nucleases Location: 34878-35028 bp Feature: domain Description: HNHc Note: nucleases Location: 348 78 -35028 bp Feature: gene Location: 35135-35593 bp Feature: domain Description: Bac_Flav_CT_G Location: 35153-35579 bp Feature: domain Description: Bac_Flav_CT_G Location: 35153-35579 bp Feature: gene Location: 35614-36246 bp Feature: domain Description: DUF4141 Location: 35638-35785 bp Feature: domain Description: DUF4141 Location: 35638 -3578 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4141 (pfam13605)

Seq: WDDM01000003.1 Bacteroides xylanisolvens strain BIOML-A40 scaffold3_size167452, whole genome shotgun sequence (167452 bp)
Overview 1 RT 1: 50381-54144 bp Neighborhood of RT #1 [50381, 54215] RVT-DGRs Phage_holin_4_1 Feature: gene Location: 50381-51715 bp Feature: gene Location: 51759-52103 bp Feature: gene Location: 52360-53394 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 52570-53182 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 52570-53182 bp Feature: gene Location: 53372-53743 bp Feature: gene Location: 53745-54215 bp Feature: domain Description: Phage_holin_4_1 Location: 53832-54144 bp Feature: domain Description: Phage_holin_4_1 Location: 53832-54144 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_holin_4_1 (pfam05105)

Seq: WDDM01000009.1 Bacteroides xylanisolvens strain BIOML-A40 scaffold9_size106222, whole genome shotgun sequence (106222 bp)
Overview 1 RT 1: 12717-16366 bp Neighborhood of RT #1 [12717, 16366] RVT-DGRs Feature: gene Location: 12717-13097 bp Feature: gene Location: 13094-13522 bp Feature: gene Location: 13485-14672 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13818-14445 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13818-14445 bp Feature: gene Location: 14794-14931 bp Feature: gene Location: 15005-16366 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs