myRT

myRT report for GCA_009102325.1_ASM910232v1

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Seq: WDDN01000102.1 Bacteroides xylanisolvens strain BIOML-A41 scaffold102_size17167, whole genome shotgun sequence (17167 bp)
Overview 1 RT 1: 13250-16146 bp Neighborhood of RT #1 [13250, 16146] RVT-DGRs Feature: gene Location: 13250-13492 bp Feature: gene Location: 13673-14158 bp Feature: gene Location: 14155-15483 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 14395-14992 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 4395-1 4992 bp Feature: gene Location: 15559-15816 bp Feature: gene Location: 15838-16146 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDN01000188.1 Bacteroides xylanisolvens strain BIOML-A41 scaffold188_size2483, whole genome shotgun sequence (2483 bp)
Overview 1 RT 1: 114-2482 bp Neighborhood of RT #1 [114, 2482] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 114-1949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-12 30 bp Feature: domain Description: Intron_maturas2 Location: 1389-1758 bp Feature: domain Description: Intron_maturas2 Location: 1389-1758 bp Feature: domain Description: HNHc Note: nucleases Location: 1782-1923 bp Feature: domain Description: HNHc Note: nucleases Location: 1782 -192 3 bp Feature: gene Location: 2351-2482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDDN01000001.1 Bacteroides xylanisolvens strain BIOML-A41 scaffold1_size198451, whole genome shotgun sequence (198451 bp)
Overview 1 RT 1: 58577-61785 bp Neighborhood of RT #1 [58577, 61785] RVT-UG27 Feature: gene Location: 58577-58855 bp Feature: gene Location: 58885-59151 bp Feature: gene Location: 59201-60463 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 59393-60029 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 593 93 -60029 bp Feature: gene Location: 60456-61124 bp Feature: gene Location: 61138-61785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WDDN01000219.1 Bacteroides xylanisolvens strain BIOML-A41 scaffold219_size1341, whole genome shotgun sequence (1341 bp)
Overview 1 RT 1: 18-828 bp Neighborhood of RT #1 [18, 1319] RVT-DGRs Feature: gene Location: 18-1319 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 231-828 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 231-828 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDN01000028.1 Bacteroides xylanisolvens strain BIOML-A41 scaffold28_size62542, whole genome shotgun sequence (62542 bp)
Overview 1 RT 1: 60171-62467 bp Neighborhood of RT #1 [60171, 62514] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 60171-60980 bp Feature: domain Description: DUF1566 Location: 60702-60951 bp Feature: domain Description: DUF15 66 Location: 60702-6095 1 bp Feature: gene Location: 61127-61534 bp Feature: domain Description: Avd_like Location: 61160-61469 bp Feature: domain Description: Avd_like Location: 61160-61469 bp Feature: gene Location: 61549-62514 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 61924-62467 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 61924-62467 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: WDDN01000031.1 Bacteroides xylanisolvens strain BIOML-A41 scaffold31_size56455, whole genome shotgun sequence (56455 bp)
Overview 1 RT 1: 14436-22724 bp Neighborhood of RT #1 [14436, 22724] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 DUF4134 RVT_N RVT-GII GIIM Feature: gene Location: 14436-15068 bp Feature: domain Description: DUF4141 Location: 14460-14607 bp Feature: domain Description: DUF4141 Location: 1446 0-146 07 bp Feature: gene Location: 15089-15547 bp Feature: domain Description: Bac_Flav_CT_G Location: 15107-15533 bp Feature: domain Description: Bac_Flav_CT_G Location: 15107-15533 bp Feature: gene Location: 15625-17436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15889-16711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15889-16 711 bp Feature: domain Description: Intron_maturas2 Location: 16786-17101 bp Feature: domain Description: Intron_maturas2 Location: 16 786 -17101 bp Feature: domain Description: HNHc Note: nucleases Location: 17257-17407 bp Feature: domain Description: HNHc Note: nucleases Location: 17257-17407 bp Feature: gene Location: 17782-17955 bp Feature: gene Location: 17983-19812 bp Feature: domain Description: Bac_Flav_CT_G Location: 17986-19798 bp Feature: domain Description: Bac_Flav_CT_G Location: 17986 -19798 bp Feature: gene Location: 20042-20392 bp Feature: domain Description: DUF4133 Location: 20057-20327 bp Feature: domain Description: DUF4133 Location: 20057-20327 bp Feature: gene Location: 20404-20646 bp Feature: domain Description: DUF4134 Location: 20551-20641 bp Feature: domain Description: DUF4134 Location: 20551-206 41 bp Feature: gene Location: 20651-22300 bp Feature: domain Description: RVT_N Location: 20708-20951 bp Feature: domain Description: RVT_N Location: 20708-20951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20996-21644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20996 -216 44 bp Feature: domain Description: GIIM Note: maturase Location: 21701-21932 bp Feature: domain Description: GIIM Note: maturase Location: 21701-21932 bp Feature: gene Location: 22404-22556 bp Feature: gene Location: 22569-22724 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), GIIM (pfam08388)

Seq: WDDN01000003.1 Bacteroides xylanisolvens strain BIOML-A41 scaffold3_size179292, whole genome shotgun sequence (179292 bp)
Overview 1 RT 1: 162627-166576 bp Neighborhood of RT #1 [162627, 166576] RVT-DGRs Feature: gene Location: 162627-162917 bp Feature: gene Location: 162927-164288 bp Feature: gene Location: 164621-165808 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 164954-165581 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 164954-165581 bp Feature: gene Location: 165771-166199 bp Feature: gene Location: 166196-166576 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDN01000045.1 Bacteroides xylanisolvens strain BIOML-A41 scaffold45_size46555, whole genome shotgun sequence (46555 bp)
Overview 1 RT 1: 13322-26827 bp Neighborhood of RT #1 [13322, 26827] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 13322-13564 bp Feature: gene Location: 13744-14229 bp Feature: gene Location: 14226-15530 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 14439-15033 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 14439-15033 bp Feature: gene Location: 16047-22784 bp Feature: domain Description: Laminin_G_3 Location: 17508-17586 bp Feature: domain Description: Laminin_G_3 Location: 17508 -1758 6 bp Feature: domain Description: Laminin_G_3 Location: 18237-18663 bp Feature: domain Description: Laminin_G_3 Location: 18 237-18 663 bp Feature: gene Location: 22811-26827 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: WDDN01000004.1 Bacteroides xylanisolvens strain BIOML-A41 scaffold4_size167452, whole genome shotgun sequence (167452 bp)
Overview 1 RT 1: 113238-117072 bp Neighborhood of RT #1 [113238, 117072] Phage_holin_4_1 RVT-DGRs Feature: gene Location: 113238-113708 bp Feature: domain Description: Phage_holin_4_1 Location: 113325-113637 bp Feature: domain Description: Phage_holin_4_1 Location: 113325-113637 bp Feature: gene Location: 113710-114081 bp Feature: gene Location: 114059-115093 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 114269-114881 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 114269 -114881 bp Feature: gene Location: 115350-115694 bp Feature: gene Location: 115738-117072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), RVT-DGRs

Seq: WDDN01000070.1 Bacteroides xylanisolvens strain BIOML-A41 scaffold70_size33114, whole genome shotgun sequence (33114 bp)
Overview 1 RT 1: 4433-16834 bp Neighborhood of RT #1 [4433, 16959] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons PDDEXK_2 Feature: gene Location: 4433-6232 bp Feature: domain Description: rpsA Location: 4502-6101 bp Feature: domain Description: rpsA Location: 4502-610 1 bp Feature: gene Location: 6329-12370 bp Feature: domain Description: DUF4011 Location: 7559-8072 bp Feature: domain Description: DUF4011 Location: 7559-8072 bp Feature: domain Description: DEXXQc_SF1 Location: 8411-8840 bp Feature: domain Description: DEXXQc_SF1 Location: 8411-8840 bp Feature: domain Description: DEXXQc_SF1 Location: 9839-10598 bp Feature: domain Description: DEXXQc_SF1 Location: 9839-10 598 bp Feature: domain Description: TIGR00376 Location: 10727-11117 bp Feature: domain Description: TIGR00376 Location: 10 727-11117 bp Feature: domain Description: MTES_1575 Location: 11270-11555 bp Feature: domain Description: MTES_1575 Location: 11270-11555 bp Feature: domain Description: DUF3320 Location: 11885-12020 bp Feature: domain Description: DUF3320 Location: 11885-12020 bp Feature: gene Location: 12421-13551 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12742-13285 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12742-13285 bp Feature: gene Location: 13759-15966 bp Feature: gene Location: 16135-16959 bp Feature: domain Description: PDDEXK_2 Location: 16156-16834 bp Feature: domain Description: PDDEXK_2 Location: 16156-16834 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, PDDEXK_2 (pfam12784)