myRT

myRT report for GCA_009102385.1_ASM910238v1

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Seq: WDDD01000001.1 Bacteroides xylanisolvens strain BIOML-A31 scaffold1_size198451, whole genome shotgun sequence (198451 bp)
Overview 1 RT 1: 58577-61785 bp Neighborhood of RT #1 [58577, 61785] RVT-UG27 Feature: gene Location: 58577-58855 bp Feature: gene Location: 58885-59151 bp Feature: gene Location: 59201-60463 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 59393-60029 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 59393-60029 bp Feature: gene Location: 60456-61124 bp Feature: gene Location: 61138-61785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WDDD01000214.1 Bacteroides xylanisolvens strain BIOML-A31 scaffold214_size6033, whole genome shotgun sequence (6033 bp)
Overview 1 RT 1: 3670-5412 bp Neighborhood of RT #1 [3670, 5903] RVT-DGRs Feature: gene Location: 3670-3912 bp Feature: gene Location: 4093-4578 bp Feature: gene Location: 4575-5903 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4815-5412 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4815-5412 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDD01000021.1 Bacteroides xylanisolvens strain BIOML-A31 scaffold21_size56373, whole genome shotgun sequence (56373 bp)
Overview 1 RT 1: 14376-22664 bp Neighborhood of RT #1 [14376, 22664] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 DUF4134 RVT_N RVT-GII GIIM Feature: gene Location: 14376-15008 bp Feature: domain Description: DUF4141 Location: 14400-14547 bp Feature: domain Description: DUF4141 Location: 14400-14547 bp Feature: gene Location: 15029-15487 bp Feature: domain Description: Bac_Flav_CT_G Location: 15047-15473 bp Feature: domain Description: Bac_Flav_CT_G Location: 15047-15473 bp Feature: gene Location: 15565-17376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15829-16651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15829-16651 bp Feature: domain Description: Intron_maturas2 Location: 16726-17041 bp Feature: domain Description: Intron_maturas2 Location: 16726-17041 bp Feature: domain Description: HNHc Note: nucleases Location: 17197-17347 bp Feature: domain Description: HNHc Note: nucleases Location: 17197-173 47 bp Feature: gene Location: 17722-17895 bp Feature: gene Location: 17923-19752 bp Feature: domain Description: Bac_Flav_CT_G Location: 17926-19738 bp Feature: domain Description: Bac_Flav_CT_G Location: 17926-1973 8 bp Feature: gene Location: 19982-20332 bp Feature: domain Description: DUF4133 Location: 19997-20267 bp Feature: domain Description: DUF413 3 Location: 19997-20267 bp Feature: gene Location: 20344-20586 bp Feature: domain Description: DUF4134 Location: 20491-20581 bp Feature: domain Description: DUF413 4 Location: 20491-20581 bp Feature: gene Location: 20591-22240 bp Feature: domain Description: RVT_N Location: 20648-20891 bp Feature: domain Description: RVT_N Location: 20648-20891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20936-21584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2093 6-21584 bp Feature: domain Description: GIIM Note: maturase Location: 21641-21872 bp Feature: domain Description: GIIM Note: maturase Location: 21641-21872 bp Feature: gene Location: 22344-22496 bp Feature: gene Location: 22509-22664 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), GIIM (pfam08388)

Seq: WDDD01000238.1 Bacteroides xylanisolvens strain BIOML-A31 scaffold238_size4415, whole genome shotgun sequence (4415 bp)
Overview 1 RT 1: 2-4063 bp Neighborhood of RT #1 [2, 4413] RVT-Retrons MTES_1575 DUF3320 Feature: gene Location: 2-1735 bp Feature: gene Location: 1943-3073 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2264-2807 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2264 -2807 bp Feature: gene Location: 3124-4413 bp Feature: domain Description: MTES_1575 Location: 3313-3598 bp Feature: domain Description: MTES_1575 Location: 3313-3598 bp Feature: domain Description: DUF3320 Location: 3928-4063 bp Feature: domain Description: DUF3320 Location: 3928-4 063 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, MTES_1575 (pfam18741), DUF3320 (pfam11784)

Seq: WDDD01000024.1 Bacteroides xylanisolvens strain BIOML-A31 scaffold24_size53539, whole genome shotgun sequence (53539 bp)
Overview 1 RT 1: 51168-53464 bp Neighborhood of RT #1 [51168, 53511] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 51168-51977 bp Feature: domain Description: DUF1566 Location: 51699-51948 bp Feature: domain Description: DUF15 66 Location: 5 1699-5 1948 bp Feature: gene Location: 52124-52531 bp Feature: domain Description: Avd_like Location: 52157-52466 bp Feature: domain Description: Avd_like Location: 5 215 7-5 2466 bp Feature: gene Location: 52546-53511 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 52921-53464 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5 2921-5 3464 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: WDDD01000300.1 Bacteroides xylanisolvens strain BIOML-A31 scaffold300_size2484, whole genome shotgun sequence (2484 bp)
Overview 1 RT 1: 115-2483 bp Neighborhood of RT #1 [115, 2483] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 115-1950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-1231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-1231 bp Feature: domain Description: Intron_maturas2 Location: 1390-1759 bp Feature: domain Description: Intron_maturas2 Location: 1390-1759 bp Feature: domain Description: HNHc Note: nucleases Location: 1783-1924 bp Feature: domain Description: HNHc Note: nucleases Location: 1783-1924 bp Feature: gene Location: 2352-2483 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDDD01000034.1 Bacteroides xylanisolvens strain BIOML-A31 scaffold34_size46677, whole genome shotgun sequence (46677 bp)
Overview 1 RT 1: 23772-33234 bp Neighborhood of RT #1 [23772, 33234] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 23772-30509 bp Feature: domain Description: Laminin_G_3 Location: 25233-25311 bp Feature: domain Description: Laminin_G_3 Location: 25233-25311 bp Feature: domain Description: Laminin_G_3 Location: 25962-26388 bp Feature: domain Description: Laminin_G_3 Location: 25962-26388 bp Feature: gene Location: 30754-30909 bp Feature: gene Location: 31026-32330 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31239-31833 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31239-31833 bp Feature: gene Location: 32327-32812 bp Feature: gene Location: 32992-33234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: WDDD01000004.1 Bacteroides xylanisolvens strain BIOML-A31 scaffold4_size149328, whole genome shotgun sequence (149328 bp)
Overview 1 RT 1: 113237-117071 bp Neighborhood of RT #1 [113237, 117071] Phage_holin_4_1 RVT-DGRs Feature: gene Location: 113237-113707 bp Feature: domain Description: Phage_holin_4_1 Location: 113324-113636 bp Feature: domain Description: Phage_holin_4_1 Location: 113324-113636 bp Feature: gene Location: 113709-114080 bp Feature: gene Location: 114058-115092 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 114268-114880 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 114268 -1148 8 0 bp Feature: gene Location: 115349-115693 bp Feature: gene Location: 115737-117071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), RVT-DGRs

Seq: WDDD01000007.1 Bacteroides xylanisolvens strain BIOML-A31 scaffold7_size96210, whole genome shotgun sequence (96210 bp)
Overview 1 RT 1: 82367-86316 bp Neighborhood of RT #1 [82367, 86316] RVT-DGRs Feature: gene Location: 82367-82657 bp Feature: gene Location: 82667-84028 bp Feature: gene Location: 84361-85548 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 84694-85321 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8469 4-85321 bp Feature: gene Location: 85511-85939 bp Feature: gene Location: 85936-86316 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs