myRT

myRT report for GCA_009102425.1_ASM910242v1

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Seq: WDDB01000012.1 Bacteroides xylanisolvens strain BIOML-A28 scaffold12_size34867, whole genome shotgun sequence (34867 bp)
Overview 1 RT 1: 23772-33234 bp Neighborhood of RT #1 [23772, 33234] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 23772-30509 bp Feature: domain Description: Laminin_G_3 Location: 25233-25311 bp Feature: domain Description: Laminin_G_3 Location: 25233-2531 1 bp Feature: domain Description: Laminin_G_3 Location: 25962-26388 bp Feature: domain Description: Laminin_G_3 Location: 25962-26388 bp Feature: gene Location: 30754-30909 bp Feature: gene Location: 31026-32330 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31239-31833 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31 239-31 833 bp Feature: gene Location: 32327-32812 bp Feature: gene Location: 32992-33234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: WDDB01000001.1 Bacteroides xylanisolvens strain BIOML-A28 scaffold1_size143801, whole genome shotgun sequence (143801 bp)
Overview 1 RT 1: 110982-114915 bp Neighborhood of RT #1 [110982, 114915] RVT-UG27 Feature: gene Location: 110982-111629 bp Feature: gene Location: 111643-112311 bp Feature: gene Location: 112304-113566 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 112496-113132 bp Feature: RT Description: RVT-UG2 7 Note: UG2 7 RT Location: 112 496-113132 bp Feature: gene Location: 113889-114386 bp Feature: gene Location: 114436-114915 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WDDB01000343.1 Bacteroides xylanisolvens strain BIOML-A28 scaffold343_size4390, whole genome shotgun sequence (4390 bp)
Overview 1 RT 1: 2-4039 bp Neighborhood of RT #1 [2, 4389] RVT-Retrons MTES_1575 DUF3320 Feature: gene Location: 2-1891 bp Feature: gene Location: 2099-3229 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2420-2963 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2420-2963 bp Feature: gene Location: 3280-4389 bp Feature: domain Description: MTES_1575 Location: 3289-3574 bp Feature: domain Description: MTES_1575 Location: 3 289-3 574 bp Feature: domain Description: DUF3320 Location: 3904-4039 bp Feature: domain Description: DUF3 3 20 Location: 3 904-403 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, MTES_1575 (pfam18741), DUF3320 (pfam11784)

Seq: WDDB01000004.1 Bacteroides xylanisolvens strain BIOML-A28 scaffold4_size61671, whole genome shotgun sequence (61671 bp)
Overview 1 RT 1: 7516-11350 bp Neighborhood of RT #1 [7516, 11350] Phage_holin_4_1 RVT-DGRs Feature: gene Location: 7516-7986 bp Feature: domain Description: Phage_holin_4_1 Location: 7603-7915 bp Feature: domain Description: Phage_holin_4 _1 Location: 7603-7915 bp Feature: gene Location: 7988-8359 bp Feature: gene Location: 8337-9371 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8547-9159 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 854 7-9159 bp Feature: gene Location: 9628-9972 bp Feature: gene Location: 10016-11350 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), RVT-DGRs

Seq: WDDB01000051.1 Bacteroides xylanisolvens strain BIOML-A28 scaffold51_size14936, whole genome shotgun sequence (14936 bp)
Overview 1 RT 1: 5644-9293 bp Neighborhood of RT #1 [5644, 9293] RVT-DGRs Feature: gene Location: 5644-6024 bp Feature: gene Location: 6021-6449 bp Feature: gene Location: 6412-7599 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6745-7372 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6745 -7372 bp Feature: gene Location: 7721-7858 bp Feature: gene Location: 7932-9293 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDB01000056.1 Bacteroides xylanisolvens strain BIOML-A28 scaffold56_size14045, whole genome shotgun sequence (14045 bp)
Overview 1 RT 1: 29-2343 bp Neighborhood of RT #1 [29, 2372] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 29-994 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 404-947 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 404-947 bp Feature: gene Location: 1009-1416 bp Feature: domain Description: Avd_like Location: 1042-1351 bp Feature: domain Description: Avd_like Location: 1042-1351 bp Feature: gene Location: 1563-2372 bp Feature: domain Description: DUF1566 Location: 2094-2343 bp Feature: domain Description: DUF156 6 Location: 2094-2343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: WDDB01000006.1 Bacteroides xylanisolvens strain BIOML-A28 scaffold6_size48379, whole genome shotgun sequence (48379 bp)
Overview 1 RT 1: 14370-22658 bp Neighborhood of RT #1 [14370, 22658] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 DUF4134 RVT_N RVT-GII GIIM Feature: gene Location: 14370-15002 bp Feature: domain Description: DUF4141 Location: 14394-14541 bp Feature: domain Description: DUF4141 Location: 14394-14541 bp Feature: gene Location: 15023-15481 bp Feature: domain Description: Bac_Flav_CT_G Location: 15041-15467 bp Feature: domain Description: Bac_Flav_CT_G Location: 15041-15467 bp Feature: gene Location: 15559-17370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15823-16645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15823-16645 bp Feature: domain Description: Intron_maturas2 Location: 16720-17035 bp Feature: domain Description: Intron_maturas2 Location: 167 20-17 035 bp Feature: domain Description: HNHc Note: nucleases Location: 17191-17341 bp Feature: domain Description: HNHc Note: nucleases Location: 17 191-17 341 bp Feature: gene Location: 17716-17889 bp Feature: gene Location: 17917-19746 bp Feature: domain Description: Bac_Flav_CT_G Location: 17920-19732 bp Feature: domain Description: Bac_Flav_CT_G Location: 17 920-197 32 bp Feature: gene Location: 19976-20326 bp Feature: domain Description: DUF4133 Location: 19991-20261 bp Feature: domain Description: DUF4133 Location: 19991-20261 bp Feature: gene Location: 20338-20580 bp Feature: domain Description: DUF4134 Location: 20485-20575 bp Feature: domain Description: DUF4134 Location: 20485-2057 5 bp Feature: gene Location: 20585-22234 bp Feature: domain Description: RVT_N Location: 20642-20885 bp Feature: domain Description: RVT_N Location: 20642-20885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20930-21578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20930-2157 8 bp Feature: domain Description: GIIM Note: maturase Location: 21635-21866 bp Feature: domain Description: GIIM Note: maturase Location: 21635-21866 bp Feature: gene Location: 22338-22490 bp Feature: gene Location: 22503-22658 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), GIIM (pfam08388)

Seq: WDDB01000715.1 Bacteroides xylanisolvens strain BIOML-A28 scaffold715_size2484, whole genome shotgun sequence (2484 bp)
Overview 1 RT 1: 115-2483 bp Neighborhood of RT #1 [115, 2483] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 115-1950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-1231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409-1231 bp Feature: domain Description: Intron_maturas2 Location: 1390-1759 bp Feature: domain Description: Intron_maturas2 Location: 1390-1759 bp Feature: domain Description: HNHc Note: nucleases Location: 1783-1924 bp Feature: domain Description: HNHc Note: nucleases Location: 178 3-1924 bp Feature: gene Location: 2352-2483 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)