myRT

myRT report for GCA_009102485.1_ASM910248v1

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Seq: WDCX01000001.1 Bacteroides xylanisolvens strain BIOML-A24 scaffold1_size196267, whole genome shotgun sequence (196267 bp)
Overview 1 RT 1: 56394-59602 bp Neighborhood of RT #1 [56394, 59602] RVT-UG27 Feature: gene Location: 56394-56672 bp Feature: gene Location: 56702-56968 bp Feature: gene Location: 57018-58280 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 57210-57846 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 5721 0-57846 bp Feature: gene Location: 58273-58941 bp Feature: gene Location: 58955-59602 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WDCX01000211.1 Bacteroides xylanisolvens strain BIOML-A24 scaffold211_size2791, whole genome shotgun sequence (2791 bp)
Overview 1 RT 1: 258-2788 bp Neighborhood of RT #1 [258, 2788] RVT-DGRs Feature: gene Location: 258-500 bp Feature: gene Location: 681-1166 bp Feature: gene Location: 1163-2491 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1403-2000 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1403-2 000 bp Feature: gene Location: 2567-2788 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCX01000214.1 Bacteroides xylanisolvens strain BIOML-A24 scaffold214_size2483, whole genome shotgun sequence (2483 bp)
Overview 1 RT 1: 114-2482 bp Neighborhood of RT #1 [114, 2482] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 114-1949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-123 0 bp Feature: domain Description: Intron_maturas2 Location: 1389-1758 bp Feature: domain Description: Intron_maturas2 Location: 13 89-1758 bp Feature: domain Description: HNHc Note: nucleases Location: 1782-1923 bp Feature: domain Description: HNHc Note: nucleases Location: 1782-1923 bp Feature: gene Location: 2351-2482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDCX01000027.1 Bacteroides xylanisolvens strain BIOML-A24 scaffold27_size56455, whole genome shotgun sequence (56455 bp)
Overview 1 RT 1: 14436-22724 bp Neighborhood of RT #1 [14436, 22724] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 DUF4134 RVT_N RVT-GII GIIM Feature: gene Location: 14436-15068 bp Feature: domain Description: DUF4141 Location: 14460-14607 bp Feature: domain Description: DUF4 14 1 Location: 14 4 60-14 607 bp Feature: gene Location: 15089-15547 bp Feature: domain Description: Bac_Flav_CT_G Location: 15107-15533 bp Feature: domain Description: Bac_Flav_CT_G Location: 15107-15533 bp Feature: gene Location: 15625-17436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15889-16711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15889-16711 bp Feature: domain Description: Intron_maturas2 Location: 16786-17101 bp Feature: domain Description: Intron_maturas2 Location: 16786-17101 bp Feature: domain Description: HNHc Note: nucleases Location: 17257-17407 bp Feature: domain Description: HNHc Note: nucleases Location: 17257-174 07 bp Feature: gene Location: 17782-17955 bp Feature: gene Location: 17983-19812 bp Feature: domain Description: Bac_Flav_CT_G Location: 17986-19798 bp Feature: domain Description: Bac_Flav_CT_G Location: 17986-19798 bp Feature: gene Location: 20042-20392 bp Feature: domain Description: DUF4133 Location: 20057-20327 bp Feature: domain Description: DUF4 133 Location: 20057-20327 bp Feature: gene Location: 20404-20646 bp Feature: domain Description: DUF4134 Location: 20551-20641 bp Feature: domain Description: DUF4 134 Location: 20551-2064 1 bp Feature: gene Location: 20651-22300 bp Feature: domain Description: RVT_N Location: 20708-20951 bp Feature: domain Description: RVT_N Location: 20708-20951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20996-21644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20996-2164 4 bp Feature: domain Description: GIIM Note: maturase Location: 21701-21932 bp Feature: domain Description: GIIM Note: maturase Location: 21701-21932 bp Feature: gene Location: 22404-22556 bp Feature: gene Location: 22569-22724 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), GIIM (pfam08388)

Seq: WDCX01000002.1 Bacteroides xylanisolvens strain BIOML-A24 scaffold2_size167384, whole genome shotgun sequence (167384 bp)
Overview 1 RT 1: 50313-54076 bp Neighborhood of RT #1 [50313, 54147] RVT-DGRs Phage_holin_4_1 Feature: gene Location: 50313-51647 bp Feature: gene Location: 51691-52035 bp Feature: gene Location: 52292-53326 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 52502-53114 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5 25 02-5 3114 bp Feature: gene Location: 53304-53675 bp Feature: gene Location: 53677-54147 bp Feature: domain Description: Phage_holin_4_1 Location: 53764-54076 bp Feature: domain Description: Phage_holin_4_1 Location: 5 3764-5 4076 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_holin_4_1 (pfam05105)

Seq: WDCX01000006.1 Bacteroides xylanisolvens strain BIOML-A24 scaffold6_size141953, whole genome shotgun sequence (141953 bp)
Overview 1 RT 1: 125288-129237 bp Neighborhood of RT #1 [125288, 129237] RVT-DGRs Feature: gene Location: 125288-125578 bp Feature: gene Location: 125588-126949 bp Feature: gene Location: 127282-128469 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 127615-128242 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1276 15-128242 bp Feature: gene Location: 128432-128860 bp Feature: gene Location: 128857-129237 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCX01000072.1 Bacteroides xylanisolvens strain BIOML-A24 scaffold72_size33114, whole genome shotgun sequence (33114 bp)
Overview 1 RT 1: 4433-16834 bp Neighborhood of RT #1 [4433, 16959] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons PDDEXK_2 Feature: gene Location: 4433-6232 bp Feature: domain Description: rpsA Location: 4502-6101 bp Feature: domain Description: rpsA Location: 4502-6101 bp Feature: gene Location: 6329-12370 bp Feature: domain Description: DUF4011 Location: 7559-8072 bp Feature: domain Description: DUF4011 Location: 7 559-807 2 bp Feature: domain Description: DEXXQc_SF1 Location: 8411-8840 bp Feature: domain Description: DEXXQc_SF1 Location: 8411-8840 bp Feature: domain Description: DEXXQc_SF1 Location: 9839-10598 bp Feature: domain Description: DEXXQc_SF1 Location: 9839-10598 bp Feature: domain Description: TIGR00376 Location: 10727-11117 bp Feature: domain Description: TIGR0037 6 Location: 107 27 -11117 bp Feature: domain Description: MTES_1575 Location: 11270-11555 bp Feature: domain Description: MTES_157 5 Location: 1127 0-11555 bp Feature: domain Description: DUF3320 Location: 11885-12020 bp Feature: domain Description: DUF3320 Location: 11885-12020 bp Feature: gene Location: 12421-13551 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12742-13285 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 127 42-13285 bp Feature: gene Location: 13759-15966 bp Feature: gene Location: 16135-16959 bp Feature: domain Description: PDDEXK_2 Location: 16156-16834 bp Feature: domain Description: PDDEXK_2 Location: 16156-16834 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, PDDEXK_2 (pfam12784)

Seq: WDCX01000079.1 Bacteroides xylanisolvens strain BIOML-A24 scaffold79_size30989, whole genome shotgun sequence (30989 bp)
Overview 1 RT 1: 29-2343 bp Neighborhood of RT #1 [29, 2372] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 29-994 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 404-947 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 404-947 bp Feature: gene Location: 1009-1416 bp Feature: domain Description: Avd_like Location: 1042-1351 bp Feature: domain Description: Avd_like Location: 1042-1351 bp Feature: gene Location: 1563-2372 bp Feature: domain Description: DUF1566 Location: 2094-2343 bp Feature: domain Description: DUF1566 Location: 2094-2343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: WDCX01000080.1 Bacteroides xylanisolvens strain BIOML-A24 scaffold80_size35444, whole genome shotgun sequence (35444 bp)
Overview 1 RT 1: 237-13742 bp Neighborhood of RT #1 [237, 13742] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 237-479 bp Feature: gene Location: 659-1144 bp Feature: gene Location: 1141-2445 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1354-1948 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1354-19 48 bp Feature: gene Location: 2962-9699 bp Feature: domain Description: Laminin_G_3 Location: 4423-4501 bp Feature: domain Description: Laminin_G_3 Location: 4423-4501 bp Feature: domain Description: Laminin_G_3 Location: 5152-5578 bp Feature: domain Description: Laminin_G_3 Location: 5152-5578 bp Feature: gene Location: 9726-13742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)