myRT

myRT report for GCA_009102505.1_ASM910250v1

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Seq: WDCY01000101.1 Bacteroides xylanisolvens strain BIOML-A25 scaffold101_size18048, whole genome shotgun sequence (18048 bp)
Overview 1 RT 1: 1092-13487 bp Neighborhood of RT #1 [1092, 13618] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 1092-1916 bp Feature: domain Description: PDDEXK_2 Location: 1113-1791 bp Feature: domain Description: PDDEXK_2 Location: 1 1 1 3-1 791 bp Feature: gene Location: 2085-4292 bp Feature: gene Location: 4500-5630 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4821-5364 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4821 -5364 bp Feature: gene Location: 5681-11722 bp Feature: domain Description: DUF4011 Location: 6911-7424 bp Feature: domain Description: DUF401 1 Location: 691 1 -7424 bp Feature: domain Description: DEXXQc_SF1 Location: 7763-8192 bp Feature: domain Description: DEXXQc_SF1 Location: 7763-81 92 bp Feature: domain Description: DEXXQc_SF1 Location: 9191-9950 bp Feature: domain Description: DEXXQc_SF1 Location: 91 91 -9950 bp Feature: domain Description: TIGR00376 Location: 10079-10469 bp Feature: domain Description: TIGR00376 Location: 1 0079-1 0469 bp Feature: domain Description: MTES_1575 Location: 10622-10907 bp Feature: domain Description: MTES_1 575 Location: 1 0622-1 0907 bp Feature: domain Description: DUF3320 Location: 11237-11372 bp Feature: domain Description: DUF3320 Location: 1 1 237-1 1 372 bp Feature: gene Location: 11819-13618 bp Feature: domain Description: rpsA Location: 11888-13487 bp Feature: domain Description: rpsA Location: 1 1 888-1 3487 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: WDCY01000147.1 Bacteroides xylanisolvens strain BIOML-A25 scaffold147_size6227, whole genome shotgun sequence (6227 bp)
Overview 1 RT 1: 131-2364 bp Neighborhood of RT #1 [131, 2364] RVT-DGRs Feature: gene Location: 131-1459 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 371-968 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 371-968 bp Feature: gene Location: 1456-1941 bp Feature: gene Location: 2122-2364 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCY01000185.1 Bacteroides xylanisolvens strain BIOML-A25 scaffold185_size2483, whole genome shotgun sequence (2483 bp)
Overview 1 RT 1: 114-2482 bp Neighborhood of RT #1 [114, 2482] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 114-1949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-123 0 bp Feature: domain Description: Intron_maturas2 Location: 1389-1758 bp Feature: domain Description: Intron_maturas2 Location: 13 89-1758 bp Feature: domain Description: HNHc Note: nucleases Location: 1782-1923 bp Feature: domain Description: HNHc Note: nucleases Location: 1782-1923 bp Feature: gene Location: 2351-2482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDCY01000028.1 Bacteroides xylanisolvens strain BIOML-A25 scaffold28_size62588, whole genome shotgun sequence (62588 bp)
Overview 1 RT 1: 60217-62513 bp Neighborhood of RT #1 [60217, 62560] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 60217-61026 bp Feature: domain Description: DUF1566 Location: 60748-60997 bp Feature: domain Description: DUF1566 Location: 6074 8-60997 bp Feature: gene Location: 61173-61580 bp Feature: domain Description: Avd_like Location: 61206-61515 bp Feature: domain Description: Avd_like Location: 61206-61515 bp Feature: gene Location: 61595-62560 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 61970-62513 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 61970-62513 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: WDCY01000002.1 Bacteroides xylanisolvens strain BIOML-A25 scaffold2_size198713, whole genome shotgun sequence (198713 bp)
Overview 1 RT 1: 136667-140600 bp Neighborhood of RT #1 [136667, 140600] RVT-UG27 Feature: gene Location: 136667-137314 bp Feature: gene Location: 137328-137996 bp Feature: gene Location: 137989-139251 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 138181-138817 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 138181-138817 bp Feature: gene Location: 139574-140071 bp Feature: gene Location: 140121-140600 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WDCY01000035.1 Bacteroides xylanisolvens strain BIOML-A25 scaffold35_size56395, whole genome shotgun sequence (56395 bp)
Overview 1 RT 1: 14376-22664 bp Neighborhood of RT #1 [14376, 22664] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 DUF4134 RVT_N RVT-GII GIIM Feature: gene Location: 14376-15008 bp Feature: domain Description: DUF4141 Location: 14400-14547 bp Feature: domain Description: DUF4141 Location: 14400-14547 bp Feature: gene Location: 15029-15487 bp Feature: domain Description: Bac_Flav_CT_G Location: 15047-15473 bp Feature: domain Description: Bac_Flav_CT_G Location: 15047-15473 bp Feature: gene Location: 15565-17376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15829-16651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15829-16 6 51 bp Feature: domain Description: Intron_maturas2 Location: 16726-17041 bp Feature: domain Description: Intron_maturas2 Location: 16 726 -17041 bp Feature: domain Description: HNHc Note: nucleases Location: 17197-17347 bp Feature: domain Description: HNHc Note: nucleases Location: 17197-17347 bp Feature: gene Location: 17722-17895 bp Feature: gene Location: 17923-19752 bp Feature: domain Description: Bac_Flav_CT_G Location: 17926-19738 bp Feature: domain Description: Bac_Flav_CT_G Location: 17926 -19738 bp Feature: gene Location: 19982-20332 bp Feature: domain Description: DUF4133 Location: 19997-20267 bp Feature: domain Description: DUF4133 Location: 19997-2026 7 bp Feature: gene Location: 20344-20586 bp Feature: domain Description: DUF4134 Location: 20491-20581 bp Feature: domain Description: DUF4134 Location: 20491-20581 bp Feature: gene Location: 20591-22240 bp Feature: domain Description: RVT_N Location: 20648-20891 bp Feature: domain Description: RVT_N Location: 206 48-20891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20936-21584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20936 -21584 bp Feature: domain Description: GIIM Note: maturase Location: 21641-21872 bp Feature: domain Description: GIIM Note: maturase Location: 216 41-21872 bp Feature: gene Location: 22344-22496 bp Feature: gene Location: 22509-22664 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), GIIM (pfam08388)

Seq: WDCY01000036.1 Bacteroides xylanisolvens strain BIOML-A25 scaffold36_size55600, whole genome shotgun sequence (55600 bp)
Overview 1 RT 1: 1446-5280 bp Neighborhood of RT #1 [1446, 5280] Phage_holin_4_1 RVT-DGRs Feature: gene Location: 1446-1916 bp Feature: domain Description: Phage_holin_4_1 Location: 1533-1845 bp Feature: domain Description: Phage_holin_4_1 Location: 1533-1845 bp Feature: gene Location: 1918-2289 bp Feature: gene Location: 2267-3301 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2477-3089 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 247 7 -3089 bp Feature: gene Location: 3558-3902 bp Feature: gene Location: 3946-5280 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), RVT-DGRs

Seq: WDCY01000003.1 Bacteroides xylanisolvens strain BIOML-A25 scaffold3_size181246, whole genome shotgun sequence (181246 bp)
Overview 1 RT 1: 163074-167023 bp Neighborhood of RT #1 [163074, 167023] RVT-DGRs Feature: gene Location: 163074-163364 bp Feature: gene Location: 163374-164735 bp Feature: gene Location: 165068-166255 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 165401-166028 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 165401-166028 bp Feature: gene Location: 166218-166646 bp Feature: gene Location: 166643-167023 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCY01000047.1 Bacteroides xylanisolvens strain BIOML-A25 scaffold47_size46772, whole genome shotgun sequence (46772 bp)
Overview 1 RT 1: 23772-33234 bp Neighborhood of RT #1 [23772, 33234] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 23772-30509 bp Feature: domain Description: Laminin_G_3 Location: 25233-25311 bp Feature: domain Description: Laminin_G_3 Location: 25233-25311 bp Feature: domain Description: Laminin_G_3 Location: 25962-26388 bp Feature: domain Description: Laminin_G_3 Location: 259 62-26388 bp Feature: gene Location: 30754-30909 bp Feature: gene Location: 31026-32330 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31239-31833 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31239 -31833 bp Feature: gene Location: 32327-32812 bp Feature: gene Location: 32992-33234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs