myRT

myRT report for GCA_009102525.1_ASM910252v1

Download annotations/find similar RTs

Seq: WDCW01000103.1 Bacteroides xylanisolvens strain BIOML-A23 scaffold103_size19843, whole genome shotgun sequence (19843 bp)
Overview 1 RT 1: 2-1595 bp Neighborhood of RT #1 [2, 1595] RVT-DGRs Feature: gene Location: 2-667 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5-176 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5-1 76 bp Feature: gene Location: 664-1149 bp Feature: gene Location: 1353-1595 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCW01000113.1 Bacteroides xylanisolvens strain BIOML-A23 scaffold113_size17821, whole genome shotgun sequence (17821 bp)
Overview 1 RT 1: 675-13070 bp Neighborhood of RT #1 [675, 13201] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 675-1499 bp Feature: domain Description: PDDEXK_2 Location: 696-1374 bp Feature: domain Description: PDDEXK_2 Location: 696-1374 bp Feature: gene Location: 1668-3875 bp Feature: gene Location: 4083-5213 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4404-4947 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4404-4947 bp Feature: gene Location: 5264-11305 bp Feature: domain Description: DUF4011 Location: 6494-7007 bp Feature: domain Description: DUF4011 Location: 6494-7007 bp Feature: domain Description: DEXXQc_SF1 Location: 7346-7775 bp Feature: domain Description: DEXXQc_SF1 Location: 7346-7775 bp Feature: domain Description: DEXXQc_SF1 Location: 8774-9533 bp Feature: domain Description: DEXXQc_SF1 Location: 8774-9533 bp Feature: domain Description: TIGR00376 Location: 9662-10052 bp Feature: domain Description: TIGR00376 Location: 9662 -10052 bp Feature: domain Description: MTES_1575 Location: 10205-10490 bp Feature: domain Description: MTES_1575 Location: 102 05-10490 bp Feature: domain Description: DUF3320 Location: 10820-10955 bp Feature: domain Description: DUF332 0 Location: 1082 0-10955 bp Feature: gene Location: 11402-13201 bp Feature: domain Description: rpsA Location: 11471-13070 bp Feature: domain Description: rpsA Location: 11471-13070 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: WDCW01000182.1 Bacteroides xylanisolvens strain BIOML-A23 scaffold182_size4882, whole genome shotgun sequence (4882 bp)
Overview 1 RT 1: 1634-4530 bp Neighborhood of RT #1 [1634, 4530] RVT-DGRs Feature: gene Location: 1634-1876 bp Feature: gene Location: 2057-2542 bp Feature: gene Location: 2539-3867 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2779-3376 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2779-3 3 76 bp Feature: gene Location: 3943-4200 bp Feature: gene Location: 4222-4530 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCW01000001.1 Bacteroides xylanisolvens strain BIOML-A23 scaffold1_size198451, whole genome shotgun sequence (198451 bp)
Overview 1 RT 1: 136667-140600 bp Neighborhood of RT #1 [136667, 140600] RVT-UG27 Feature: gene Location: 136667-137314 bp Feature: gene Location: 137328-137996 bp Feature: gene Location: 137989-139251 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 138181-138817 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 138181-138817 bp Feature: gene Location: 139574-140071 bp Feature: gene Location: 140121-140600 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WDCW01000214.1 Bacteroides xylanisolvens strain BIOML-A23 scaffold214_size2483, whole genome shotgun sequence (2483 bp)
Overview 1 RT 1: 114-2482 bp Neighborhood of RT #1 [114, 2482] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 114-1949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1230 bp Feature: domain Description: Intron_maturas2 Location: 1389-1758 bp Feature: domain Description: Intron_maturas2 Location: 1389-175 8 bp Feature: domain Description: HNHc Note: nucleases Location: 1782-1923 bp Feature: domain Description: HNHc Note: nucleases Location: 1782-1923 bp Feature: gene Location: 2351-2482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDCW01000027.1 Bacteroides xylanisolvens strain BIOML-A23 scaffold27_size56455, whole genome shotgun sequence (56455 bp)
Overview 1 RT 1: 14436-22724 bp Neighborhood of RT #1 [14436, 22724] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 DUF4134 RVT_N RVT-GII GIIM Feature: gene Location: 14436-15068 bp Feature: domain Description: DUF4141 Location: 14460-14607 bp Feature: domain Description: DUF4141 Location: 1446 0-146 07 bp Feature: gene Location: 15089-15547 bp Feature: domain Description: Bac_Flav_CT_G Location: 15107-15533 bp Feature: domain Description: Bac_Flav_CT_G Location: 15107-15533 bp Feature: gene Location: 15625-17436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15889-16711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15889-16 711 bp Feature: domain Description: Intron_maturas2 Location: 16786-17101 bp Feature: domain Description: Intron_maturas2 Location: 16 786 -17101 bp Feature: domain Description: HNHc Note: nucleases Location: 17257-17407 bp Feature: domain Description: HNHc Note: nucleases Location: 17257-17407 bp Feature: gene Location: 17782-17955 bp Feature: gene Location: 17983-19812 bp Feature: domain Description: Bac_Flav_CT_G Location: 17986-19798 bp Feature: domain Description: Bac_Flav_CT_G Location: 17986 -19798 bp Feature: gene Location: 20042-20392 bp Feature: domain Description: DUF4133 Location: 20057-20327 bp Feature: domain Description: DUF4133 Location: 20057-20327 bp Feature: gene Location: 20404-20646 bp Feature: domain Description: DUF4134 Location: 20551-20641 bp Feature: domain Description: DUF4134 Location: 20551-206 41 bp Feature: gene Location: 20651-22300 bp Feature: domain Description: RVT_N Location: 20708-20951 bp Feature: domain Description: RVT_N Location: 20708-20951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20996-21644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20996 -216 44 bp Feature: domain Description: GIIM Note: maturase Location: 21701-21932 bp Feature: domain Description: GIIM Note: maturase Location: 21701-21932 bp Feature: gene Location: 22404-22556 bp Feature: gene Location: 22569-22724 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), GIIM (pfam08388)

Seq: WDCW01000002.1 Bacteroides xylanisolvens strain BIOML-A23 scaffold2_size179300, whole genome shotgun sequence (179300 bp)
Overview 1 RT 1: 162635-166584 bp Neighborhood of RT #1 [162635, 166584] RVT-DGRs Feature: gene Location: 162635-162925 bp Feature: gene Location: 162935-164296 bp Feature: gene Location: 164629-165816 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 164962-165589 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 164962-165589 bp Feature: gene Location: 165779-166207 bp Feature: gene Location: 166204-166584 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCW01000004.1 Bacteroides xylanisolvens strain BIOML-A23 scaffold4_size167384, whole genome shotgun sequence (167384 bp)
Overview 1 RT 1: 50313-54076 bp Neighborhood of RT #1 [50313, 54147] RVT-DGRs Phage_holin_4_1 Feature: gene Location: 50313-51647 bp Feature: gene Location: 51691-52035 bp Feature: gene Location: 52292-53326 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 52502-53114 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 52502-53114 bp Feature: gene Location: 53304-53675 bp Feature: gene Location: 53677-54147 bp Feature: domain Description: Phage_holin_4_1 Location: 53764-54076 bp Feature: domain Description: Phage_holin_4_1 Location: 53764-54076 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_holin_4_1 (pfam05105)

Seq: WDCW01000068.1 Bacteroides xylanisolvens strain BIOML-A23 scaffold68_size34082, whole genome shotgun sequence (34082 bp)
Overview 1 RT 1: 23772-33234 bp Neighborhood of RT #1 [23772, 33234] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 23772-30509 bp Feature: domain Description: Laminin_G_3 Location: 25233-25311 bp Feature: domain Description: Laminin_G_3 Location: 25233-25311 bp Feature: domain Description: Laminin_G_3 Location: 25962-26388 bp Feature: domain Description: Laminin_G_3 Location: 259 62-26388 bp Feature: gene Location: 30754-30909 bp Feature: gene Location: 31026-32330 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31239-31833 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31239 -31833 bp Feature: gene Location: 32327-32812 bp Feature: gene Location: 32992-33234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: WDCW01000070.1 Bacteroides xylanisolvens strain BIOML-A23 scaffold70_size30360, whole genome shotgun sequence (30360 bp)
Overview 1 RT 1: 2-1577 bp Neighborhood of RT #1 [2, 1577] RVT-DGRs Feature: gene Location: 2-667 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5-176 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5-176 bp Feature: gene Location: 664-1149 bp Feature: gene Location: 1335-1577 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCW01000096.1 Bacteroides xylanisolvens strain BIOML-A23 scaffold96_size20909, whole genome shotgun sequence (20909 bp)
Overview 1 RT 1: 29-2343 bp Neighborhood of RT #1 [29, 2372] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 29-994 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 404-947 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 404-947 bp Feature: gene Location: 1009-1416 bp Feature: domain Description: Avd_like Location: 1042-1351 bp Feature: domain Description: Avd_like Location: 1042-1351 bp Feature: gene Location: 1563-2372 bp Feature: domain Description: DUF1566 Location: 2094-2343 bp Feature: domain Description: DUF1566 Location: 2094-2343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)