myRT

myRT report for GCA_009102545.1_ASM910254v1

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Seq: WDCV01000114.1 Bacteroides xylanisolvens strain BIOML-A22 scaffold114_size16771, whole genome shotgun sequence (16771 bp)
Overview 1 RT 1: 1-12210 bp Neighborhood of RT #1 [1, 12341] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 1-639 bp Feature: domain Description: PDDEXK_2 Location: 4-514 bp Feature: domain Description: PDDEXK_2 Location: 4-51 4 bp Feature: gene Location: 808-3015 bp Feature: gene Location: 3223-4353 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3544-4087 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3544-4087 bp Feature: gene Location: 4404-10445 bp Feature: domain Description: DUF4011 Location: 5634-6147 bp Feature: domain Description: DUF401 1 Location: 5634-61 47 bp Feature: domain Description: DEXXQc_SF1 Location: 6486-6915 bp Feature: domain Description: DEXXQc_SF1 Location: 6486-691 5 bp Feature: domain Description: DEXXQc_SF1 Location: 7914-8673 bp Feature: domain Description: DEXXQc_SF1 Location: 791 4-8673 bp Feature: domain Description: TIGR00376 Location: 8802-9192 bp Feature: domain Description: TIGR00376 Location: 8802-91 92 bp Feature: domain Description: MTES_1575 Location: 9345-9630 bp Feature: domain Description: MTES_1 575 Location: 9345-9630 bp Feature: domain Description: DUF3320 Location: 9960-10095 bp Feature: domain Description: DUF3320 Location: 9960-1 0095 bp Feature: gene Location: 10542-12341 bp Feature: domain Description: rpsA Location: 10611-12210 bp Feature: domain Description: rpsA Location: 1 061 1 -1 221 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: WDCV01000001.1 Bacteroides xylanisolvens strain BIOML-A22 scaffold1_size198646, whole genome shotgun sequence (198646 bp)
Overview 1 RT 1: 58772-61980 bp Neighborhood of RT #1 [58772, 61980] RVT-UG27 Feature: gene Location: 58772-59050 bp Feature: gene Location: 59080-59346 bp Feature: gene Location: 59396-60658 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 59588-60224 bp Feature: RT Description: RVT-UG2 7 Note: UG2 7 RT Location: 59588-602 2 4 bp Feature: gene Location: 60651-61319 bp Feature: gene Location: 61333-61980 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WDCV01000021.1 Bacteroides xylanisolvens strain BIOML-A22 scaffold21_size56395, whole genome shotgun sequence (56395 bp)
Overview 1 RT 1: 14376-22664 bp Neighborhood of RT #1 [14376, 22664] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 DUF4134 RVT_N RVT-GII GIIM Feature: gene Location: 14376-15008 bp Feature: domain Description: DUF4141 Location: 14400-14547 bp Feature: domain Description: DUF4141 Location: 14400-14547 bp Feature: gene Location: 15029-15487 bp Feature: domain Description: Bac_Flav_CT_G Location: 15047-15473 bp Feature: domain Description: Bac_Flav_CT_G Location: 15047-15473 bp Feature: gene Location: 15565-17376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15829-16651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15829-16651 bp Feature: domain Description: Intron_maturas2 Location: 16726-17041 bp Feature: domain Description: Intron_maturas2 Location: 16726-17041 bp Feature: domain Description: HNHc Note: nucleases Location: 17197-17347 bp Feature: domain Description: HNHc Note: nucleases Location: 17197-173 47 bp Feature: gene Location: 17722-17895 bp Feature: gene Location: 17923-19752 bp Feature: domain Description: Bac_Flav_CT_G Location: 17926-19738 bp Feature: domain Description: Bac_Flav_CT_G Location: 17926-1973 8 bp Feature: gene Location: 19982-20332 bp Feature: domain Description: DUF4133 Location: 19997-20267 bp Feature: domain Description: DUF413 3 Location: 19997-20267 bp Feature: gene Location: 20344-20586 bp Feature: domain Description: DUF4134 Location: 20491-20581 bp Feature: domain Description: DUF413 4 Location: 20491-20581 bp Feature: gene Location: 20591-22240 bp Feature: domain Description: RVT_N Location: 20648-20891 bp Feature: domain Description: RVT_N Location: 20648-20891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20936-21584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2093 6-21584 bp Feature: domain Description: GIIM Note: maturase Location: 21641-21872 bp Feature: domain Description: GIIM Note: maturase Location: 21641-21872 bp Feature: gene Location: 22344-22496 bp Feature: gene Location: 22509-22664 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), GIIM (pfam08388)

Seq: WDCV01000290.1 Bacteroides xylanisolvens strain BIOML-A22 scaffold290_size2483, whole genome shotgun sequence (2483 bp)
Overview 1 RT 1: 114-2482 bp Neighborhood of RT #1 [114, 2482] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 114-1949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 08-1230 bp Feature: domain Description: Intron_maturas2 Location: 1389-1758 bp Feature: domain Description: Intron_maturas2 Location: 1389-1758 bp Feature: domain Description: HNHc Note: nucleases Location: 1782-1923 bp Feature: domain Description: HNHc Note: nucleases Location: 1782-1923 bp Feature: gene Location: 2351-2482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDCV01000002.1 Bacteroides xylanisolvens strain BIOML-A22 scaffold2_size167354, whole genome shotgun sequence (167354 bp)
Overview 1 RT 1: 113238-117072 bp Neighborhood of RT #1 [113238, 117072] Phage_holin_4_1 RVT-DGRs Feature: gene Location: 113238-113708 bp Feature: domain Description: Phage_holin_4_1 Location: 113325-113637 bp Feature: domain Description: Phage_holin_4_1 Location: 113325 -113637 bp Feature: gene Location: 113710-114081 bp Feature: gene Location: 114059-115093 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 114269-114881 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 114269-114881 bp Feature: gene Location: 115350-115694 bp Feature: gene Location: 115738-117072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), RVT-DGRs

Seq: WDCV01000311.1 Bacteroides xylanisolvens strain BIOML-A22 scaffold311_size2016, whole genome shotgun sequence (2016 bp)
Overview 1 RT 1: 3-1664 bp Neighborhood of RT #1 [3, 1664] RVT-DGRs Feature: gene Location: 3-1001 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 243-840 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 243-840 bp Feature: gene Location: 1077-1334 bp Feature: gene Location: 1356-1664 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCV01000048.1 Bacteroides xylanisolvens strain BIOML-A22 scaffold48_size36000, whole genome shotgun sequence (36000 bp)
Overview 1 RT 1: 12717-16366 bp Neighborhood of RT #1 [12717, 16366] RVT-DGRs Feature: gene Location: 12717-13097 bp Feature: gene Location: 13094-13522 bp Feature: gene Location: 13485-14672 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13818-14445 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13818-14445 bp Feature: gene Location: 14794-14931 bp Feature: gene Location: 15005-16366 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCV01000064.1 Bacteroides xylanisolvens strain BIOML-A22 scaffold64_size31003, whole genome shotgun sequence (31003 bp)
Overview 1 RT 1: 28632-30928 bp Neighborhood of RT #1 [28632, 30975] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 28632-29441 bp Feature: domain Description: DUF1566 Location: 29163-29412 bp Feature: domain Description: DUF1566 Location: 29163-29412 bp Feature: gene Location: 29588-29995 bp Feature: domain Description: Avd_like Location: 29621-29930 bp Feature: domain Description: Avd_like Location: 29621-29930 bp Feature: gene Location: 30010-30975 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 30385-30928 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3038 5-30928 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: WDCV01000007.1 Bacteroides xylanisolvens strain BIOML-A22 scaffold7_size97066, whole genome shotgun sequence (97066 bp)
Overview 1 RT 1: 23772-33234 bp Neighborhood of RT #1 [23772, 33234] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 23772-30509 bp Feature: domain Description: Laminin_G_3 Location: 25233-25311 bp Feature: domain Description: Laminin_G_3 Location: 25233-25311 bp Feature: domain Description: Laminin_G_3 Location: 25962-26388 bp Feature: domain Description: Laminin_G_3 Location: 259 62-26388 bp Feature: gene Location: 30754-30909 bp Feature: gene Location: 31026-32330 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31239-31833 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31239 -31833 bp Feature: gene Location: 32327-32812 bp Feature: gene Location: 32992-33234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs