myRT

myRT report for GCA_009102605.1_ASM910260v1

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Seq: WDCN01000010.1 Bacteroides xylanisolvens strain BIOML-A14 scaffold10_size182383, whole genome shotgun sequence (182383 bp)
Overview 1 RT 1: 100454-110623 bp Neighborhood of RT #1 [100454, 110661] Laminin_G_3 pfam08757 LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 100454-107242 bp Feature: domain Description: Laminin_G_3 Location: 102890-103271 bp Feature: domain Description: Laminin_G_3 Location: 1 02890-1 03271 bp Feature: domain Description: pfam08757 Location: 104066-104390 bp Feature: domain Description: pfam08757 Location: 1 04066-1 04390 bp Feature: domain Description: LRR_AMN1 Location: 105002-105446 bp Feature: domain Description: LRR_AMN1 Location: 1 05002-1 05446 bp Feature: gene Location: 107303-107470 bp Feature: gene Location: 107615-108970 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 107891-108482 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 07891 -1 08482 bp Feature: gene Location: 108972-109466 bp Feature: gene Location: 109516-110661 bp Feature: domain Description: Arm-DNA-bind_5 Location: 109540-109786 bp Feature: domain Description: Arm-DNA-bind_5 Location: 1 09540-1 09786 bp Feature: domain Description: Phage_int_SAM_5 Location: 109825-110110 bp Feature: domain Description: Phage_int_SAM_5 Location: 1 09825-1 1 01 1 0 bp Feature: domain Description: INTN1_C_like Location: 110149-110623 bp Feature: domain Description: INTN1 _C_like Location: 1 1 01 49-1 1 0623 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: WDCN01000014.1 Bacteroides xylanisolvens strain BIOML-A14 scaffold14_size244057, whole genome shotgun sequence (244065 bp)
Overview 1 RT 1: 7337-17295 bp 2 RT 2: 179893-192288 bp Neighborhood of RT #1 [7337, 17295] RGL11 Pgu1 Pgu1 RVT-GII GIIM RVT-GII GIIM DUF4990 Neighborhood of RT #2 [179893, 192419] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 7337-9283 bp Feature: domain Description: RGL11 Location: 7484-9224 bp Feature: domain Description: RGL11 Location: 7484-92 2 4 bp Feature: gene Location: 9432-10922 bp Feature: domain Description: Pgu1 Location: 9597-9948 bp Feature: domain Description: Pgu1 Location: 9597-9948 bp Feature: domain Description: Pgu1 Location: 10041-10533 bp Feature: domain Description: Pgu1 Location: 10041-10533 bp Feature: gene Location: 11576-12982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11918-12536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11918-12 536 bp Feature: domain Description: GIIM Note: maturase Location: 12593-12812 bp Feature: domain Description: GIIM Note: maturase Location: 12 593-12 812 bp Feature: gene Location: 13556-14848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13766-14423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13766-1442 3 bp Feature: domain Description: GIIM Note: maturase Location: 14501-14708 bp Feature: domain Description: GIIM Note: maturase Location: 14501-14708 bp Feature: gene Location: 15270-16814 bp Feature: domain Description: DUF4990 Location: 16386-16800 bp Feature: domain Description: DUF4990 Location: 16386-16800 bp Feature: gene Location: 16861-17295 bp Feature: gene Location: 179893-180717 bp Feature: domain Description: PDDEXK_2 Location: 179914-180592 bp Feature: domain Description: PDDEXK_2 Location: 179914-180592 bp Feature: gene Location: 180886-183093 bp Feature: gene Location: 183301-184431 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 183622-184165 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18362 2 -184165 bp Feature: gene Location: 184482-190523 bp Feature: domain Description: DUF4011 Location: 185712-186225 bp Feature: domain Description: DUF4011 Location: 185712 -1862 2 5 bp Feature: domain Description: DEXXQc_SF1 Location: 186564-187005 bp Feature: domain Description: DEXXQc_SF1 Location: 186564-187005 bp Feature: domain Description: DEXXQc_SF1 Location: 188001-188751 bp Feature: domain Description: DEXXQc_SF1 Location: 188001-188751 bp Feature: domain Description: TIGR00376 Location: 188880-189270 bp Feature: domain Description: TIGR00376 Location: 188880-1892 70 bp Feature: domain Description: MTES_1575 Location: 189423-189708 bp Feature: domain Description: MTES_1575 Location: 18942 3-189708 bp Feature: domain Description: DUF3320 Location: 190038-190173 bp Feature: domain Description: DUF332 0 Location: 190038-190173 bp Feature: gene Location: 190620-192419 bp Feature: domain Description: rpsA Location: 190689-192288 bp Feature: domain Description: rpsA Location: 190689-192 2 88 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RGL11 (cl22850), Pgu1 (COG5434), RVT-GII, GIIM (pfam08388), DUF4990 (pfam16380), PDDEXK_2 (pfam12784), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative)
MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: WDCN01000017.1 Bacteroides xylanisolvens strain BIOML-A14 scaffold17_size121586, whole genome shotgun sequence (121586 bp)
Overview 1 RT 1: 88788-97809 bp Neighborhood of RT #1 [88788, 97809] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 88788-95507 bp Feature: domain Description: Laminin_G_3 Location: 90231-90309 bp Feature: domain Description: Laminin_G_3 Location: 9023 1-903 09 bp Feature: domain Description: Laminin_G_3 Location: 90960-91386 bp Feature: domain Description: Laminin_G_3 Location: 90960-913 86 bp Feature: gene Location: 95752-95907 bp Feature: gene Location: 96024-97022 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 96237-96831 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9623 7-9683 1 bp Feature: gene Location: 97019-97327 bp Feature: gene Location: 97324-97809 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: WDCN01000020.1 Bacteroides xylanisolvens strain BIOML-A14 scaffold20_size116732, whole genome shotgun sequence (116732 bp)
Overview 1 RT 1: 93830-97314 bp Neighborhood of RT #1 [93830, 97337] RVT_N RVT-GII GIIM LRR_AMN1 Feature: gene Location: 93830-94186 bp Feature: gene Location: 94709-95008 bp Feature: gene Location: 95092-96423 bp Feature: domain Description: RVT_N Location: 95095-95245 bp Feature: domain Description: RVT_N Location: 95095-9524 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95290-95935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95290-95935 bp Feature: domain Description: GIIM Note: maturase Location: 95989-96223 bp Feature: domain Description: GIIM Note: maturase Location: 95989-96223 bp Feature: gene Location: 96517-96651 bp Feature: gene Location: 96666-97337 bp Feature: domain Description: LRR_AMN1 Location: 97041-97314 bp Feature: domain Description: LRR_AMN1 Location: 9704 1-97314 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), LRR_AMN1 (sd00034)

Seq: WDCN01000027.1 Bacteroides xylanisolvens strain BIOML-A14 scaffold27_size92050, whole genome shotgun sequence (92050 bp)
Overview 1 RT 1: 63056-66198 bp Neighborhood of RT #1 [63056, 66215] DUF4133 DUF4134 RVT-GII Intron_maturas2 HNHc DUF4134 Feature: gene Location: 63056-63352 bp Feature: domain Description: DUF4133 Location: 63098-63275 bp Feature: domain Description: DUF4133 Location: 63098-63275 bp Feature: gene Location: 63365-63559 bp Feature: domain Description: DUF4134 Location: 63455-63545 bp Feature: domain Description: DUF4134 Location: 6345 5 -635 45 bp Feature: gene Location: 63584-65395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63848-64670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63848-64670 bp Feature: domain Description: Intron_maturas2 Location: 64859-65069 bp Feature: domain Description: Intron_maturas2 Location: 6485 9-65 069 bp Feature: domain Description: HNHc Note: nucleases Location: 65219-65324 bp Feature: domain Description: HNHc Note: nucleases Location: 65 219-65 324 bp Feature: gene Location: 65575-65925 bp Feature: gene Location: 65937-66215 bp Feature: domain Description: DUF4134 Location: 65997-66198 bp Feature: domain Description: DUF4134 Location: 65 997-66198 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDCN01000034.1 Bacteroides xylanisolvens strain BIOML-A14 scaffold34_size64578, whole genome shotgun sequence (64578 bp)
Overview 1 RT 1: 4951-7771 bp Neighborhood of RT #1 [4951, 7771] RVT-DGRs Feature: gene Location: 4951-5193 bp Feature: gene Location: 5379-5828 bp Feature: gene Location: 5861-7162 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6074-6671 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6 074-6 6 71 bp Feature: gene Location: 7259-7516 bp Feature: gene Location: 7538-7771 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCN01000040.1 Bacteroides xylanisolvens strain BIOML-A14 scaffold40_size53879, whole genome shotgun sequence (53801 bp)
Overview 1 RT 1: 19121-22237 bp Neighborhood of RT #1 [19121, 22237] RVT-UG27 Feature: gene Location: 19121-19282 bp Feature: gene Location: 19321-19578 bp Feature: gene Location: 19628-20893 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 19817-20453 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 19817 -20453 bp Feature: gene Location: 20911-21537 bp Feature: gene Location: 21581-22237 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WDCN01000004.1 Bacteroides xylanisolvens strain BIOML-A14 scaffold4_size324190, whole genome shotgun sequence (324190 bp)
Overview 1 RT 1: 160754-167394 bp Neighborhood of RT #1 [160754, 167450] REC RVT-Retrons Phage_int_SAM_5 INTN1_C_like NGN_SP_UpxY KOW_NusG Feature: gene Location: 160754-162445 bp Feature: domain Description: REC Location: 161561-161792 bp Feature: domain Description: REC Location: 161561-161792 bp Feature: gene Location: 162454-163098 bp Feature: gene Location: 163076-165295 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 163277-163862 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 163277-1638 62 bp Feature: gene Location: 165571-166536 bp Feature: domain Description: Phage_int_SAM_5 Location: 165604-165847 bp Feature: domain Description: Phage_int_SAM_5 Location: 165604-1658 47 bp Feature: domain Description: INTN1_C_like Location: 165928-166450 bp Feature: domain Description: INTN1_C_like Location: 165928 -166450 bp Feature: gene Location: 166872-167450 bp Feature: domain Description: NGN_SP_UpxY Location: 166950-167232 bp Feature: domain Description: NGN_SP_UpxY Location: 166950-167232 bp Feature: domain Description: KOW_NusG Location: 167283-167394 bp Feature: domain Description: KOW_NusG Location: 16728 3-167394 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT REC (smart00448), RVT-Retrons, Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), NGN_SP_UpxY (cd09895), KOW_NusG (cd06091)

Seq: WDCN01000056.1 Bacteroides xylanisolvens strain BIOML-A14 scaffold56_size20960, whole genome shotgun sequence (20960 bp)
Overview 1 RT 1: 11715-17231 bp Neighborhood of RT #1 [11715, 17272] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4133 Feature: gene Location: 11715-12029 bp Feature: domain Description: DUF3876 Location: 11769-12018 bp Feature: domain Description: DUF3876 Location: 11769 -12018 bp Feature: gene Location: 12044-14431 bp Feature: domain Description: Bac_Flav_CT_G Location: 12164-14423 bp Feature: domain Description: Bac_Flav_CT_G Location: 12164-14423 bp Feature: gene Location: 14412-16139 bp Feature: domain Description: RVT_N Location: 14517-14760 bp Feature: domain Description: RVT_N Location: 14517-14760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14805-15453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14805-15453 bp Feature: domain Description: GIIM Note: maturase Location: 15504-15738 bp Feature: domain Description: GIIM Note: maturase Location: 15504-15738 bp Feature: gene Location: 16695-16940 bp Feature: domain Description: Bac_Flav_CT_G Location: 16698-16923 bp Feature: domain Description: Bac_Flav_CT_G Location: 1669 8-169 23 bp Feature: gene Location: 16937-17272 bp Feature: domain Description: DUF4133 Location: 16964-17231 bp Feature: domain Description: DUF4133 Location: 169 64-17231 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571)

Seq: WDCN01000007.1 Bacteroides xylanisolvens strain BIOML-A14 scaffold7_size213487, whole genome shotgun sequence (213487 bp)
Overview 1 RT 1: 97782-104667 bp 2 RT 2: 192343-193956 bp Neighborhood of RT #1 [97782, 104667] AAA_25 RVT-GII Intron_maturas2 Toprim_2 Neighborhood of RT #2 [192343, 193956] DDE_Tnp_IS66_C group_II_RT_mat RVT-GII Feature: gene Location: 97782-99329 bp Feature: domain Description: AAA_25 Location: 98397-98859 bp Feature: domain Description: AAA_25 Location: 98397-98859 bp Feature: gene Location: 99541-99723 bp Feature: gene Location: 100272-102080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100536-101358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10 0536-10 1358 bp Feature: domain Description: Intron_maturas2 Location: 101427-101736 bp Feature: domain Description: Intron_maturas2 Location: 10 1427-10 1736 bp Feature: gene Location: 102052-102981 bp Feature: domain Description: Toprim_2 Location: 102604-102892 bp Feature: domain Description: Toprim_2 Location: 10 2604-10 2892 bp Feature: gene Location: 103264-104667 bp Feature: gene Location: 192343-192543 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 192355-192457 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 192355-192457 bp Feature: gene Location: 192639-192941 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 192687-192924 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 192687-192924 bp Feature: gene Location: 192998-193318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193001-193238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193001-193238 bp Feature: gene Location: 193330-193458 bp Feature: gene Location: 193723-193956 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_25 (pfam13481), RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155), DDE_Tnp_IS66_C (pfam13817), group_II_RT_mat (TIGR04416)

Seq: WDCN01000008.1 Bacteroides xylanisolvens strain BIOML-A14 scaffold8_size203818, whole genome shotgun sequence (203818 bp)
Overview 1 RT 1: 178864-182635 bp Neighborhood of RT #1 [178864, 182635] RVT-DGRs Feature: gene Location: 178864-179154 bp Feature: gene Location: 179164-180522 bp Feature: gene Location: 180854-182041 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 181187-181814 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1811 87-181814 bp Feature: gene Location: 182004-182432 bp Feature: gene Location: 182429-182635 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs