myRT

myRT report for GCA_009102625.1_ASM910262v1

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Seq: WDCP01000167.1 Bacteroides xylanisolvens strain BIOML-A16 scaffold167_size2483, whole genome shotgun sequence (2483 bp)
Overview 1 RT 1: 114-2482 bp Neighborhood of RT #1 [114, 2482] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 114-1949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1 230 bp Feature: domain Description: Intron_maturas2 Location: 1389-1758 bp Feature: domain Description: Intron_maturas2 Location: 1 389-1 758 bp Feature: domain Description: HNHc Note: nucleases Location: 1782-1923 bp Feature: domain Description: HNHc Note: nucleases Location: 1 782-1 923 bp Feature: gene Location: 2351-2482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDCP01000028.1 Bacteroides xylanisolvens strain BIOML-A16 scaffold28_size62542, whole genome shotgun sequence (62542 bp)
Overview 1 RT 1: 60171-62467 bp Neighborhood of RT #1 [60171, 62514] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 60171-60980 bp Feature: domain Description: DUF1566 Location: 60702-60951 bp Feature: domain Description: DUF1566 Location: 60702 -60951 bp Feature: gene Location: 61127-61534 bp Feature: domain Description: Avd_like Location: 61160-61469 bp Feature: domain Description: Avd_like Location: 61160-61469 bp Feature: gene Location: 61549-62514 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 61924-62467 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6192 4-62 467 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: WDCP01000002.1 Bacteroides xylanisolvens strain BIOML-A16 scaffold2_size198822, whole genome shotgun sequence (198713 bp)
Overview 1 RT 1: 58839-62047 bp Neighborhood of RT #1 [58839, 62047] RVT-UG27 Feature: gene Location: 58839-59117 bp Feature: gene Location: 59147-59413 bp Feature: gene Location: 59463-60725 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 59655-60291 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 59655-60291 bp Feature: gene Location: 60718-61386 bp Feature: gene Location: 61400-62047 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WDCP01000032.1 Bacteroides xylanisolvens strain BIOML-A16 scaffold32_size56455, whole genome shotgun sequence (56455 bp)
Overview 1 RT 1: 14436-22724 bp Neighborhood of RT #1 [14436, 22724] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 DUF4134 RVT_N RVT-GII GIIM Feature: gene Location: 14436-15068 bp Feature: domain Description: DUF4141 Location: 14460-14607 bp Feature: domain Description: DUF4 14 1 Location: 14 4 60-14 607 bp Feature: gene Location: 15089-15547 bp Feature: domain Description: Bac_Flav_CT_G Location: 15107-15533 bp Feature: domain Description: Bac_Flav_CT_G Location: 15107-15533 bp Feature: gene Location: 15625-17436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15889-16711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15889-16711 bp Feature: domain Description: Intron_maturas2 Location: 16786-17101 bp Feature: domain Description: Intron_maturas2 Location: 16786-17101 bp Feature: domain Description: HNHc Note: nucleases Location: 17257-17407 bp Feature: domain Description: HNHc Note: nucleases Location: 17257-174 07 bp Feature: gene Location: 17782-17955 bp Feature: gene Location: 17983-19812 bp Feature: domain Description: Bac_Flav_CT_G Location: 17986-19798 bp Feature: domain Description: Bac_Flav_CT_G Location: 17986-19798 bp Feature: gene Location: 20042-20392 bp Feature: domain Description: DUF4133 Location: 20057-20327 bp Feature: domain Description: DUF4 133 Location: 20057-20327 bp Feature: gene Location: 20404-20646 bp Feature: domain Description: DUF4134 Location: 20551-20641 bp Feature: domain Description: DUF4 134 Location: 20551-2064 1 bp Feature: gene Location: 20651-22300 bp Feature: domain Description: RVT_N Location: 20708-20951 bp Feature: domain Description: RVT_N Location: 20708-20951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20996-21644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20996-2164 4 bp Feature: domain Description: GIIM Note: maturase Location: 21701-21932 bp Feature: domain Description: GIIM Note: maturase Location: 21701-21932 bp Feature: gene Location: 22404-22556 bp Feature: gene Location: 22569-22724 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), GIIM (pfam08388)

Seq: WDCP01000003.1 Bacteroides xylanisolvens strain BIOML-A16 scaffold3_size180903, whole genome shotgun sequence (180903 bp)
Overview 1 RT 1: 162731-166680 bp Neighborhood of RT #1 [162731, 166680] RVT-DGRs Feature: gene Location: 162731-163021 bp Feature: gene Location: 163031-164392 bp Feature: gene Location: 164725-165912 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 165058-165685 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 165 05 8-165 685 bp Feature: gene Location: 165875-166303 bp Feature: gene Location: 166300-166680 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCP01000044.1 Bacteroides xylanisolvens strain BIOML-A16 scaffold44_size46576, whole genome shotgun sequence (46576 bp)
Overview 1 RT 1: 23772-33234 bp Neighborhood of RT #1 [23772, 33234] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 23772-30509 bp Feature: domain Description: Laminin_G_3 Location: 25233-25311 bp Feature: domain Description: Laminin_G_3 Location: 25233-25311 bp Feature: domain Description: Laminin_G_3 Location: 25962-26388 bp Feature: domain Description: Laminin_G_3 Location: 2596 2-26 388 bp Feature: gene Location: 30754-30909 bp Feature: gene Location: 31026-32330 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31239-31833 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31239-31833 bp Feature: gene Location: 32327-32812 bp Feature: gene Location: 32992-33234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: WDCP01000004.1 Bacteroides xylanisolvens strain BIOML-A16 scaffold4_size167452, whole genome shotgun sequence (167452 bp)
Overview 1 RT 1: 50381-54144 bp Neighborhood of RT #1 [50381, 54215] RVT-DGRs Phage_holin_4_1 Feature: gene Location: 50381-51715 bp Feature: gene Location: 51759-52103 bp Feature: gene Location: 52360-53394 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 52570-53182 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5257 0-53182 bp Feature: gene Location: 53372-53743 bp Feature: gene Location: 53745-54215 bp Feature: domain Description: Phage_holin_4_1 Location: 53832-54144 bp Feature: domain Description: Phage_holin_4_1 Location: 53832-54144 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_holin_4_1 (pfam05105)

Seq: WDCP01000068.1 Bacteroides xylanisolvens strain BIOML-A16 scaffold68_size33265, whole genome shotgun sequence (33265 bp)
Overview 1 RT 1: 30902-32644 bp Neighborhood of RT #1 [30902, 33135] RVT-DGRs Feature: gene Location: 30902-31144 bp Feature: gene Location: 31325-31810 bp Feature: gene Location: 31807-33135 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32047-32644 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32047-32644 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCP01000072.1 Bacteroides xylanisolvens strain BIOML-A16 scaffold72_size40135, whole genome shotgun sequence (40135 bp)
Overview 1 RT 1: 7223-11352 bp Neighborhood of RT #1 [7223, 11352] TipAS COG2369 LPD3 RVT-DGRs Feature: gene Location: 7223-8434 bp Feature: domain Description: TipAS Location: 7247-7550 bp Feature: domain Description: TipAS Location: 7247-7550 bp Feature: domain Description: COG2369 Location: 7670-7856 bp Feature: domain Description: COG2369 Location: 7670-7856 bp Feature: domain Description: LPD3 Location: 8075-8357 bp Feature: domain Description: LPD3 Location: 8075-8357 bp Feature: gene Location: 8532-8765 bp Feature: gene Location: 9141-10442 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9354-9951 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9 354-9 9 51 bp Feature: gene Location: 10439-10924 bp Feature: gene Location: 11110-11352 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TipAS (pfam07739), COG2369 (Uncharacterized conserved protein, contains phage Mu gpF-like domain ), LPD3 (pfam18798), RVT-DGRs

Seq: WDCP01000098.1 Bacteroides xylanisolvens strain BIOML-A16 scaffold98_size18154, whole genome shotgun sequence (18154 bp)
Overview 1 RT 1: 4433-16834 bp Neighborhood of RT #1 [4433, 16959] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons PDDEXK_2 Feature: gene Location: 4433-6232 bp Feature: domain Description: rpsA Location: 4502-6101 bp Feature: domain Description: rpsA Location: 4502-610 1 bp Feature: gene Location: 6329-12370 bp Feature: domain Description: DUF4011 Location: 7559-8072 bp Feature: domain Description: DUF4011 Location: 7559-8072 bp Feature: domain Description: DEXXQc_SF1 Location: 8411-8840 bp Feature: domain Description: DEXXQc_SF1 Location: 8411-8840 bp Feature: domain Description: DEXXQc_SF1 Location: 9839-10598 bp Feature: domain Description: DEXXQc_SF1 Location: 9839-10 598 bp Feature: domain Description: TIGR00376 Location: 10727-11117 bp Feature: domain Description: TIGR00376 Location: 10 727-11117 bp Feature: domain Description: MTES_1575 Location: 11270-11555 bp Feature: domain Description: MTES_1575 Location: 11270-11555 bp Feature: domain Description: DUF3320 Location: 11885-12020 bp Feature: domain Description: DUF3320 Location: 11885-12020 bp Feature: gene Location: 12421-13551 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12742-13285 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12742-13285 bp Feature: gene Location: 13759-15966 bp Feature: gene Location: 16135-16959 bp Feature: domain Description: PDDEXK_2 Location: 16156-16834 bp Feature: domain Description: PDDEXK_2 Location: 16156-16834 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, PDDEXK_2 (pfam12784)