myRT

myRT report for GCA_009102665.1_ASM910266v1

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Seq: WDCM01000012.1 Bacteroides xylanisolvens strain BIOML-A13 scaffold12_size143325, whole genome shotgun sequence (143325 bp)
Overview 1 RT 1: 79153-91548 bp Neighborhood of RT #1 [79153, 91679] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 79153-79977 bp Feature: domain Description: PDDEXK_2 Location: 79174-79852 bp Feature: domain Description: PDDEXK_2 Location: 791 74-79852 bp Feature: gene Location: 80146-82353 bp Feature: gene Location: 82561-83691 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 82882-83425 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 82882-83425 bp Feature: gene Location: 83742-89783 bp Feature: domain Description: DUF4011 Location: 84972-85485 bp Feature: domain Description: DUF401 1 Location: 84972-85485 bp Feature: domain Description: DEXXQc_SF1 Location: 85824-86265 bp Feature: domain Description: DEXXQc_SF1 Location: 85824-86265 bp Feature: domain Description: DEXXQc_SF1 Location: 87261-88011 bp Feature: domain Description: DEXXQc_SF1 Location: 87261 -8801 1 bp Feature: domain Description: TIGR00376 Location: 88140-88530 bp Feature: domain Description: TIGR00376 Location: 881 40-88530 bp Feature: domain Description: MTES_1575 Location: 88683-88968 bp Feature: domain Description: MTES_1 575 Location: 88683-88968 bp Feature: domain Description: DUF3320 Location: 89298-89433 bp Feature: domain Description: DUF3320 Location: 89298-89433 bp Feature: gene Location: 89880-91679 bp Feature: domain Description: rpsA Location: 89949-91548 bp Feature: domain Description: rpsA Location: 89949-91 548 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: WDCM01000015.1 Bacteroides xylanisolvens strain BIOML-A13 scaffold15_size122150, whole genome shotgun sequence (122150 bp)
Overview 1 RT 1: 89352-98373 bp Neighborhood of RT #1 [89352, 98373] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 89352-96071 bp Feature: domain Description: Laminin_G_3 Location: 90795-90873 bp Feature: domain Description: Laminin_G_3 Location: 90795-90873 bp Feature: domain Description: Laminin_G_3 Location: 91524-91950 bp Feature: domain Description: Laminin_G_3 Location: 9152 4-91950 bp Feature: gene Location: 96316-96471 bp Feature: gene Location: 96588-97586 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 96801-97395 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 96801-97395 bp Feature: gene Location: 97583-97891 bp Feature: gene Location: 97888-98373 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: WDCM01000018.1 Bacteroides xylanisolvens strain BIOML-A13 scaffold18_size116730, whole genome shotgun sequence (116730 bp)
Overview 1 RT 1: 93828-97312 bp Neighborhood of RT #1 [93828, 97335] RVT_N RVT-GII GIIM LRR_AMN1 Feature: gene Location: 93828-94184 bp Feature: gene Location: 94707-95006 bp Feature: gene Location: 95090-96421 bp Feature: domain Description: RVT_N Location: 95093-95243 bp Feature: domain Description: RVT_N Location: 95093 -95243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95288-95933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95288-9593 3 bp Feature: domain Description: GIIM Note: maturase Location: 95987-96221 bp Feature: domain Description: GIIM Note: maturase Location: 95987-96221 bp Feature: gene Location: 96515-96649 bp Feature: gene Location: 96664-97335 bp Feature: domain Description: LRR_AMN1 Location: 97039-97312 bp Feature: domain Description: LRR_AMN1 Location: 9703 9-973 12 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), LRR_AMN1 (sd00034)

Seq: WDCM01000023.1 Bacteroides xylanisolvens strain BIOML-A13 scaffold23_size100731, whole genome shotgun sequence (100731 bp)
Overview 1 RT 1: 7337-17295 bp Neighborhood of RT #1 [7337, 17295] RGL11 Pgu1 Pgu1 RVT-GII GIIM RVT-GII GIIM DUF4990 Feature: gene Location: 7337-9283 bp Feature: domain Description: RGL11 Location: 7484-9224 bp Feature: domain Description: RGL11 Location: 74 84 -9224 bp Feature: gene Location: 9432-10922 bp Feature: domain Description: Pgu1 Location: 9597-9948 bp Feature: domain Description: Pgu1 Location: 9597-994 8 bp Feature: domain Description: Pgu1 Location: 10041-10533 bp Feature: domain Description: Pgu1 Location: 1004 1-10533 bp Feature: gene Location: 11576-12982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11918-12536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11918-12536 bp Feature: domain Description: GIIM Note: maturase Location: 12593-12812 bp Feature: domain Description: GIIM Note: maturase Location: 12593-12812 bp Feature: gene Location: 13556-14848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13766-14423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13766-14 4 23 bp Feature: domain Description: GIIM Note: maturase Location: 14501-14708 bp Feature: domain Description: GIIM Note: maturase Location: 14 501-14 708 bp Feature: gene Location: 15270-16814 bp Feature: domain Description: DUF4990 Location: 16386-16800 bp Feature: domain Description: DUF4 990 Location: 16386-16800 bp Feature: gene Location: 16861-17295 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RGL11 (cl22850), Pgu1 (COG5434), RVT-GII, GIIM (pfam08388), DUF4990 (pfam16380)

Seq: WDCM01000027.1 Bacteroides xylanisolvens strain BIOML-A13 scaffold27_size90790, whole genome shotgun sequence (90631 bp)
Overview 1 RT 1: 63056-66198 bp Neighborhood of RT #1 [63056, 66215] DUF4133 DUF4134 RVT-GII Intron_maturas2 HNHc DUF4134 Feature: gene Location: 63056-63352 bp Feature: domain Description: DUF4133 Location: 63098-63275 bp Feature: domain Description: DUF4133 Location: 63098-63275 bp Feature: gene Location: 63365-63559 bp Feature: domain Description: DUF4134 Location: 63455-63545 bp Feature: domain Description: DUF4134 Location: 6345 5 -635 45 bp Feature: gene Location: 63584-65395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63848-64670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63848-64670 bp Feature: domain Description: Intron_maturas2 Location: 64859-65069 bp Feature: domain Description: Intron_maturas2 Location: 6485 9-65 069 bp Feature: domain Description: HNHc Note: nucleases Location: 65219-65324 bp Feature: domain Description: HNHc Note: nucleases Location: 65 219-65 324 bp Feature: gene Location: 65575-65925 bp Feature: gene Location: 65937-66215 bp Feature: domain Description: DUF4134 Location: 65997-66198 bp Feature: domain Description: DUF4134 Location: 65 997-66198 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDCM01000036.1 Bacteroides xylanisolvens strain BIOML-A13 scaffold36_size64611, whole genome shotgun sequence (64611 bp)
Overview 1 RT 1: 4984-7804 bp Neighborhood of RT #1 [4984, 7804] RVT-DGRs Feature: gene Location: 4984-5226 bp Feature: gene Location: 5412-5861 bp Feature: gene Location: 5894-7195 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6107-6704 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6 107-6 704 bp Feature: gene Location: 7292-7549 bp Feature: gene Location: 7571-7804 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCM01000003.1 Bacteroides xylanisolvens strain BIOML-A13 scaffold3_size324188, whole genome shotgun sequence (324188 bp)
Overview 1 RT 1: 160752-167392 bp Neighborhood of RT #1 [160752, 167448] REC RVT-Retrons Phage_int_SAM_5 INTN1_C_like NGN_SP_UpxY KOW_NusG Feature: gene Location: 160752-162443 bp Feature: domain Description: REC Location: 161559-161790 bp Feature: domain Description: REC Location: 161559-1617 90 bp Feature: gene Location: 162452-163096 bp Feature: gene Location: 163074-165293 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 163275-163860 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16327 5-163860 bp Feature: gene Location: 165569-166534 bp Feature: domain Description: Phage_int_SAM_5 Location: 165602-165845 bp Feature: domain Description: Phage_int_SAM_5 Location: 165602-165845 bp Feature: domain Description: INTN1_C_like Location: 165926-166448 bp Feature: domain Description: INTN1_C_like Location: 165926-166448 bp Feature: gene Location: 166870-167448 bp Feature: domain Description: NGN_SP_UpxY Location: 166948-167230 bp Feature: domain Description: NGN_SP_UpxY Location: 166948-167 230 bp Feature: domain Description: KOW_NusG Location: 167281-167392 bp Feature: domain Description: KOW_NusG Location: 167 281-167 392 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT REC (smart00448), RVT-Retrons, Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), NGN_SP_UpxY (cd09895), KOW_NusG (cd06091)

Seq: WDCM01000044.1 Bacteroides xylanisolvens strain BIOML-A13 scaffold44_size55060, whole genome shotgun sequence (54967 bp)
Overview 1 RT 1: 19942-23058 bp Neighborhood of RT #1 [19942, 23058] RVT-UG27 Feature: gene Location: 19942-20103 bp Feature: gene Location: 20142-20399 bp Feature: gene Location: 20449-21714 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 20638-21274 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 20638 -21274 bp Feature: gene Location: 21732-22358 bp Feature: gene Location: 22402-23058 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WDCM01000060.1 Bacteroides xylanisolvens strain BIOML-A13 scaffold60_size20957, whole genome shotgun sequence (20957 bp)
Overview 1 RT 1: 11715-17231 bp Neighborhood of RT #1 [11715, 17272] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4133 Feature: gene Location: 11715-12029 bp Feature: domain Description: DUF3876 Location: 11769-12018 bp Feature: domain Description: DUF3876 Location: 11769 -12018 bp Feature: gene Location: 12044-14431 bp Feature: domain Description: Bac_Flav_CT_G Location: 12164-14423 bp Feature: domain Description: Bac_Flav_CT_G Location: 12164-14423 bp Feature: gene Location: 14412-16139 bp Feature: domain Description: RVT_N Location: 14517-14760 bp Feature: domain Description: RVT_N Location: 14517-14760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14805-15453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14805-15453 bp Feature: domain Description: GIIM Note: maturase Location: 15504-15738 bp Feature: domain Description: GIIM Note: maturase Location: 15504-15738 bp Feature: gene Location: 16695-16940 bp Feature: domain Description: Bac_Flav_CT_G Location: 16698-16923 bp Feature: domain Description: Bac_Flav_CT_G Location: 1669 8-169 23 bp Feature: gene Location: 16937-17272 bp Feature: domain Description: DUF4133 Location: 16964-17231 bp Feature: domain Description: DUF4133 Location: 169 64-17231 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571)

Seq: WDCM01000007.1 Bacteroides xylanisolvens strain BIOML-A13 scaffold7_size203827, whole genome shotgun sequence (203746 bp)
Overview 1 RT 1: 178792-182563 bp Neighborhood of RT #1 [178792, 182563] RVT-DGRs Feature: gene Location: 178792-179082 bp Feature: gene Location: 179092-180450 bp Feature: gene Location: 180782-181969 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 181115-181742 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 181115-181742 bp Feature: gene Location: 181932-182360 bp Feature: gene Location: 182357-182563 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCM01000008.1 Bacteroides xylanisolvens strain BIOML-A13 scaffold8_size199325, whole genome shotgun sequence (199325 bp)
Overview 1 RT 1: 19087-21059 bp 2 RT 2: 94659-99785 bp Neighborhood of RT #1 [19087, 21145] Translocase_SecB RVT-GII group_II_RT_mat DDE_Tnp_IS66_C Neighborhood of RT #2 [94659, 99785] Toprim_2 RVT-GII Intron_maturas2 Feature: gene Location: 19087-19503 bp Feature: domain Description: Translocase_SecB Location: 19144-19468 bp Feature: domain Description: Translocase_SecB Location: 19144-19468 bp Feature: gene Location: 19532-19765 bp Feature: gene Location: 20170-20490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20173-20410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20173-20410 bp Feature: gene Location: 20547-20849 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 20595-20832 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 20595-20832 bp Feature: gene Location: 20945-21145 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 20957-21059 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 20957-21059 bp Feature: gene Location: 94659-96062 bp Feature: gene Location: 96345-97274 bp Feature: domain Description: Toprim_2 Location: 96897-97185 bp Feature: domain Description: Toprim_2 Location: 96897-97185 bp Feature: gene Location: 97246-99054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97510-98332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97510-98332 bp Feature: domain Description: Intron_maturas2 Location: 98401-98710 bp Feature: domain Description: Intron_maturas2 Location: 98401-98710 bp Feature: gene Location: 99344-99487 bp Feature: gene Location: 99603-99785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Translocase_SecB (cl00251), RVT-GII, group_II_RT_mat (TIGR04416), DDE_Tnp_IS66_C (pfam13817), Toprim_2 (pfam13155), Intron_maturas2 (pfam01348)

Seq: WDCM01000009.1 Bacteroides xylanisolvens strain BIOML-A13 scaffold9_size182383, whole genome shotgun sequence (182383 bp)
Overview 1 RT 1: 100454-110623 bp Neighborhood of RT #1 [100454, 110661] Laminin_G_3 pfam08757 LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 100454-107242 bp Feature: domain Description: Laminin_G_3 Location: 102890-103271 bp Feature: domain Description: Laminin_G_3 Location: 102890-103271 bp Feature: domain Description: pfam08757 Location: 104066-104390 bp Feature: domain Description: pfam08757 Location: 104066-104390 bp Feature: domain Description: LRR_AMN1 Location: 105002-105446 bp Feature: domain Description: LRR_AMN1 Location: 105002-105446 bp Feature: gene Location: 107303-107470 bp Feature: gene Location: 107615-108970 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 107891-108482 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 107891-108482 bp Feature: gene Location: 108972-109466 bp Feature: gene Location: 109516-110661 bp Feature: domain Description: Arm-DNA-bind_5 Location: 109540-109786 bp Feature: domain Description: Arm-DNA-bind_5 Location: 109540-109786 bp Feature: domain Description: Phage_int_SAM_5 Location: 109825-110110 bp Feature: domain Description: Phage_int_SAM_5 Location: 109825-110110 bp Feature: domain Description: INTN1_C_like Location: 110149-110623 bp Feature: domain Description: INTN1_C_like Location: 110149-110623 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)