myRT

myRT report for GCA_009102675.1_ASM910267v1

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Seq: WDCJ01000010.1 Bacteroides xylanisolvens strain BIOML-A10 scaffold10_size183944, whole genome shotgun sequence (183847 bp)
Overview 1 RT 1: 101809-111978 bp Neighborhood of RT #1 [101809, 112016] Laminin_G_3 pfam08757 LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 101809-108597 bp Feature: domain Description: Laminin_G_3 Location: 104245-104626 bp Feature: domain Description: Laminin_G_3 Location: 1 04245-1 04626 bp Feature: domain Description: pfam08757 Location: 105421-105745 bp Feature: domain Description: pfam08757 Location: 1 05421 -1 05745 bp Feature: domain Description: LRR_AMN1 Location: 106357-106801 bp Feature: domain Description: LRR_AMN1 Location: 1 06357-1 06801 bp Feature: gene Location: 108658-108825 bp Feature: gene Location: 108970-110325 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 109246-109837 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 09246-1 09837 bp Feature: gene Location: 110327-110821 bp Feature: gene Location: 110871-112016 bp Feature: domain Description: Arm-DNA-bind_5 Location: 110895-111141 bp Feature: domain Description: Arm-DNA-bind_5 Location: 1 1 0895-1 1 1 1 41 bp Feature: domain Description: Phage_int_SAM_5 Location: 111180-111465 bp Feature: domain Description: Phage_int_SAM_5 Location: 1 1 1 1 80-1 1 1 465 bp Feature: domain Description: INTN1_C_like Location: 111504-111978 bp Feature: domain Description: INTN1 _C_like Location: 1 1 1 504-1 1 1 978 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: WDCJ01000017.1 Bacteroides xylanisolvens strain BIOML-A10 scaffold17_size123860, whole genome shotgun sequence (123860 bp)
Overview 1 RT 1: 91062-100083 bp Neighborhood of RT #1 [91062, 100083] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 91062-97781 bp Feature: domain Description: Laminin_G_3 Location: 92505-92583 bp Feature: domain Description: Laminin_G_3 Location: 92 505-92 583 bp Feature: domain Description: Laminin_G_3 Location: 93234-93660 bp Feature: domain Description: Laminin_G_3 Location: 932 34-93660 bp Feature: gene Location: 98026-98181 bp Feature: gene Location: 98298-99296 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 98511-99105 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 98511-99105 bp Feature: gene Location: 99293-99601 bp Feature: gene Location: 99598-100083 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: WDCJ01000019.1 Bacteroides xylanisolvens strain BIOML-A10 scaffold19_size116730, whole genome shotgun sequence (116730 bp)
Overview 1 RT 1: 93828-97312 bp Neighborhood of RT #1 [93828, 97335] RVT_N RVT-GII GIIM LRR_AMN1 Feature: gene Location: 93828-94184 bp Feature: gene Location: 94707-95006 bp Feature: gene Location: 95090-96421 bp Feature: domain Description: RVT_N Location: 95093-95243 bp Feature: domain Description: RVT_N Location: 95093 -95243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95288-95933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95288-9593 3 bp Feature: domain Description: GIIM Note: maturase Location: 95987-96221 bp Feature: domain Description: GIIM Note: maturase Location: 95987-96221 bp Feature: gene Location: 96515-96649 bp Feature: gene Location: 96664-97335 bp Feature: domain Description: LRR_AMN1 Location: 97039-97312 bp Feature: domain Description: LRR_AMN1 Location: 9703 9-973 12 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), LRR_AMN1 (sd00034)

Seq: WDCJ01000001.1 Bacteroides xylanisolvens strain BIOML-A10 scaffold1_size370899, whole genome shotgun sequence (370899 bp)
Overview 1 RT 1: 178481-190882 bp 2 RT 2: 353605-363504 bp Neighborhood of RT #1 [178481, 191007] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons PDDEXK_2 Neighborhood of RT #2 [353605, 363563] DUF4990 RVT-GII GIIM RVT-GII GIIM Pgu1 Pgu1 RGL11 Feature: gene Location: 178481-180280 bp Feature: domain Description: rpsA Location: 178550-180149 bp Feature: domain Description: rpsA Location: 178550-18014 9 bp Feature: gene Location: 180377-186418 bp Feature: domain Description: DUF4011 Location: 181607-182120 bp Feature: domain Description: DUF4 011 Location: 181607-182120 bp Feature: domain Description: DEXXQc_SF1 Location: 182459-182900 bp Feature: domain Description: DEXXQc_SF1 Location: 1824 59-182900 bp Feature: domain Description: DEXXQc_SF1 Location: 183896-184646 bp Feature: domain Description: DEXXQc_SF1 Location: 183896-184 64 6 bp Feature: domain Description: TIGR00376 Location: 184775-185165 bp Feature: domain Description: TIGR00376 Location: 184 775-185165 bp Feature: domain Description: MTES_1575 Location: 185318-185603 bp Feature: domain Description: MTES_1575 Location: 185318-185603 bp Feature: domain Description: DUF3320 Location: 185933-186068 bp Feature: domain Description: DUF3320 Location: 185933-186068 bp Feature: gene Location: 186469-187599 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 186790-187333 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 186790-187333 bp Feature: gene Location: 187807-190014 bp Feature: gene Location: 190183-191007 bp Feature: domain Description: PDDEXK_2 Location: 190204-190882 bp Feature: domain Description: PDDEXK_2 Location: 190204 -190882 bp Feature: gene Location: 353605-354039 bp Feature: gene Location: 354086-355630 bp Feature: domain Description: DUF4990 Location: 355202-355616 bp Feature: domain Description: DUF4 990 Location: 355202-355616 bp Feature: gene Location: 356052-357344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 356262-356919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 356262-356919 bp Feature: domain Description: GIIM Note: maturase Location: 356997-357204 bp Feature: domain Description: GIIM Note: maturase Location: 356997-357204 bp Feature: gene Location: 357918-359324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 358260-358878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 358260-358878 bp Feature: domain Description: GIIM Note: maturase Location: 358935-359154 bp Feature: domain Description: GIIM Note: maturase Location: 358935-359154 bp Feature: gene Location: 359978-361468 bp Feature: domain Description: Pgu1 Location: 360143-360494 bp Feature: domain Description: Pgu1 Location: 36014 3-3604 94 bp Feature: domain Description: Pgu1 Location: 360587-361079 bp Feature: domain Description: Pgu1 Location: 360587-361079 bp Feature: gene Location: 361617-363563 bp Feature: domain Description: RGL11 Location: 361764-363504 bp Feature: domain Description: RGL11 Location: 361764 -363504 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, PDDEXK_2 (pfam12784), DUF4990 (pfam16380), RVT-GII
GIIM (pfam08388), Pgu1 (COG5434), RGL11 (cl22850)

Seq: WDCJ01000027.1 Bacteroides xylanisolvens strain BIOML-A10 scaffold27_size87526, whole genome shotgun sequence (87526 bp)
Overview 1 RT 1: 63056-66198 bp Neighborhood of RT #1 [63056, 66215] DUF4133 DUF4134 RVT-GII Intron_maturas2 HNHc DUF4134 Feature: gene Location: 63056-63352 bp Feature: domain Description: DUF4133 Location: 63098-63275 bp Feature: domain Description: DUF4133 Location: 63098-63275 bp Feature: gene Location: 63365-63559 bp Feature: domain Description: DUF4134 Location: 63455-63545 bp Feature: domain Description: DUF4134 Location: 6345 5 -635 45 bp Feature: gene Location: 63584-65395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63848-64670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63848-64670 bp Feature: domain Description: Intron_maturas2 Location: 64859-65069 bp Feature: domain Description: Intron_maturas2 Location: 6485 9-65 069 bp Feature: domain Description: HNHc Note: nucleases Location: 65219-65324 bp Feature: domain Description: HNHc Note: nucleases Location: 65 219-65 324 bp Feature: gene Location: 65575-65925 bp Feature: gene Location: 65937-66215 bp Feature: domain Description: DUF4134 Location: 65997-66198 bp Feature: domain Description: DUF4134 Location: 65 997-66198 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDCJ01000036.1 Bacteroides xylanisolvens strain BIOML-A10 scaffold36_size64611, whole genome shotgun sequence (64611 bp)
Overview 1 RT 1: 4984-7804 bp Neighborhood of RT #1 [4984, 7804] RVT-DGRs Feature: gene Location: 4984-5226 bp Feature: gene Location: 5412-5861 bp Feature: gene Location: 5894-7195 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6107-6704 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6 107-6 704 bp Feature: gene Location: 7292-7549 bp Feature: gene Location: 7571-7804 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCJ01000046.1 Bacteroides xylanisolvens strain BIOML-A10 scaffold46_size41819, whole genome shotgun sequence (41819 bp)
Overview 1 RT 1: 9692-12808 bp Neighborhood of RT #1 [9692, 12808] RVT-UG27 Feature: gene Location: 9692-9853 bp Feature: gene Location: 9892-10149 bp Feature: gene Location: 10199-11464 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 10388-11024 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 10388-11024 bp Feature: gene Location: 11482-12108 bp Feature: gene Location: 12152-12808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WDCJ01000004.1 Bacteroides xylanisolvens strain BIOML-A10 scaffold4_size260594, whole genome shotgun sequence (260594 bp)
Overview 1 RT 1: 156741-162784 bp Neighborhood of RT #1 [156741, 163437] NGN_SP_UpxY KOW_NusG Phage_int_SAM_5 INTN1_C_like RVT-Retrons REC Feature: gene Location: 156741-157319 bp Feature: domain Description: NGN_SP_UpxY Location: 156819-157101 bp Feature: domain Description: NGN_SP_UpxY Location: 1568 19-157101 bp Feature: domain Description: KOW_NusG Location: 157152-157263 bp Feature: domain Description: KOW_NusG Location: 157152-157263 bp Feature: gene Location: 157655-158620 bp Feature: domain Description: Phage_int_SAM_5 Location: 157688-157931 bp Feature: domain Description: Phage_int_SAM_5 Location: 15768 8 -157931 bp Feature: domain Description: INTN1_C_like Location: 158012-158534 bp Feature: domain Description: INTN1_C_like Location: 158 012-158 534 bp Feature: gene Location: 158896-161115 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 159097-159682 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 159097-15968 2 bp Feature: gene Location: 161093-161737 bp Feature: gene Location: 161734-163437 bp Feature: domain Description: REC Location: 162553-162784 bp Feature: domain Description: REC Location: 162553-16278 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NGN_SP_UpxY (cd09895), KOW_NusG (cd06091), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-Retrons, REC (smart00448)

Seq: WDCJ01000063.1 Bacteroides xylanisolvens strain BIOML-A10 scaffold63_size17801, whole genome shotgun sequence (17801 bp)
Overview 1 RT 1: 9380-14896 bp Neighborhood of RT #1 [9380, 14937] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4133 Feature: gene Location: 9380-9694 bp Feature: domain Description: DUF3876 Location: 9434-9683 bp Feature: domain Description: DUF3876 Location: 9 434-9 683 bp Feature: gene Location: 9709-12096 bp Feature: domain Description: Bac_Flav_CT_G Location: 9829-12088 bp Feature: domain Description: Bac_Flav_CT_G Location: 9 829 -12088 bp Feature: gene Location: 12077-13804 bp Feature: domain Description: RVT_N Location: 12182-12425 bp Feature: domain Description: RVT_N Location: 12182-12425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12470-13118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12470-13118 bp Feature: domain Description: GIIM Note: maturase Location: 13169-13403 bp Feature: domain Description: GIIM Note: maturase Location: 13169 -13403 bp Feature: gene Location: 14360-14605 bp Feature: domain Description: Bac_Flav_CT_G Location: 14363-14588 bp Feature: domain Description: Bac_Flav_CT_G Location: 14363-14588 bp Feature: gene Location: 14602-14937 bp Feature: domain Description: DUF4133 Location: 14629-14896 bp Feature: domain Description: DUF4133 Location: 14629 -1489 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571)

Seq: WDCJ01000008.1 Bacteroides xylanisolvens strain BIOML-A10 scaffold8_size203746, whole genome shotgun sequence (203746 bp)
Overview 1 RT 1: 178792-182563 bp Neighborhood of RT #1 [178792, 182563] RVT-DGRs Feature: gene Location: 178792-179082 bp Feature: gene Location: 179092-180450 bp Feature: gene Location: 180782-181969 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 181115-181742 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 181115-181742 bp Feature: gene Location: 181932-182360 bp Feature: gene Location: 182357-182563 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCJ01000009.1 Bacteroides xylanisolvens strain BIOML-A10 scaffold9_size199939, whole genome shotgun sequence (199849 bp)
Overview 1 RT 1: 19611-21583 bp 2 RT 2: 95183-100309 bp Neighborhood of RT #1 [19611, 21669] Translocase_SecB RVT-GII group_II_RT_mat DDE_Tnp_IS66_C Neighborhood of RT #2 [95183, 100309] Toprim_2 RVT-GII Intron_maturas2 Feature: gene Location: 19611-20027 bp Feature: domain Description: Translocase_SecB Location: 19668-19992 bp Feature: domain Description: Translocase_SecB Location: 19668-19992 bp Feature: gene Location: 20056-20289 bp Feature: gene Location: 20694-21014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20697-20934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20697-20934 bp Feature: gene Location: 21071-21373 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 21119-21356 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 211 19-21356 bp Feature: gene Location: 21469-21669 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21481-21583 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21481-21583 bp Feature: gene Location: 95183-96586 bp Feature: gene Location: 96869-97798 bp Feature: domain Description: Toprim_2 Location: 97421-97709 bp Feature: domain Description: Toprim_2 Location: 97421-97709 bp Feature: gene Location: 97770-99578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98034-98856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98034-98856 bp Feature: domain Description: Intron_maturas2 Location: 98925-99234 bp Feature: domain Description: Intron_maturas2 Location: 98925-99234 bp Feature: gene Location: 99868-100011 bp Feature: gene Location: 100127-100309 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Translocase_SecB (cl00251), RVT-GII, group_II_RT_mat (TIGR04416), DDE_Tnp_IS66_C (pfam13817), Toprim_2 (pfam13155), Intron_maturas2 (pfam01348)