myRT

myRT report for GCA_009102685.1_ASM910268v1

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Seq: WDCL01000010.1 Bacteroides xylanisolvens strain BIOML-A12 scaffold10_size202117, whole genome shotgun sequence (202117 bp)
Overview 1 RT 1: 21184-24655 bp Neighborhood of RT #1 [21184, 24655] RVT-DGRs Feature: gene Location: 21184-21390 bp Feature: gene Location: 21387-21815 bp Feature: gene Location: 21778-22965 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 22111-22738 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 221 1 1 -22738 bp Feature: gene Location: 23087-23224 bp Feature: gene Location: 23297-24655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCL01000011.1 Bacteroides xylanisolvens strain BIOML-A12 scaffold11_size196960, whole genome shotgun sequence (196960 bp)
Overview 1 RT 1: 16722-18694 bp 2 RT 2: 92294-97420 bp Neighborhood of RT #1 [16722, 18780] Translocase_SecB RVT-GII group_II_RT_mat DDE_Tnp_IS66_C Neighborhood of RT #2 [92294, 97420] Toprim_2 RVT-GII Intron_maturas2 Feature: gene Location: 16722-17138 bp Feature: domain Description: Translocase_SecB Location: 16779-17103 bp Feature: domain Description: Translocase_SecB Location: 16779-17103 bp Feature: gene Location: 17167-17400 bp Feature: gene Location: 17805-18125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17808-18045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17808-18045 bp Feature: gene Location: 18182-18484 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 18230-18467 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 182 30-18467 bp Feature: gene Location: 18580-18780 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 18592-18694 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 18592 -18694 bp Feature: gene Location: 92294-93697 bp Feature: gene Location: 93980-94909 bp Feature: domain Description: Toprim_2 Location: 94532-94820 bp Feature: domain Description: Toprim_2 Location: 94532 -9482 0 bp Feature: gene Location: 94881-96689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95145-95967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95145-95967 bp Feature: domain Description: Intron_maturas2 Location: 96036-96345 bp Feature: domain Description: Intron_maturas2 Location: 96036-96345 bp Feature: gene Location: 96979-97122 bp Feature: gene Location: 97238-97420 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Translocase_SecB (cl00251), RVT-GII, group_II_RT_mat (TIGR04416), DDE_Tnp_IS66_C (pfam13817), Toprim_2 (pfam13155), Intron_maturas2 (pfam01348)

Seq: WDCL01000014.1 Bacteroides xylanisolvens strain BIOML-A12 scaffold14_size129887, whole genome shotgun sequence (129887 bp)
Overview 1 RT 1: 68931-73808 bp Neighborhood of RT #1 [68931, 73816] DUF1566 Avd_like RVT-DGRs Glyco_hydro_66 Feature: gene Location: 68931-69743 bp Feature: domain Description: DUF1566 Location: 69465-69717 bp Feature: domain Description: DUF1566 Location: 69465-69717 bp Feature: gene Location: 69889-70269 bp Feature: domain Description: Avd_like Location: 69916-70222 bp Feature: domain Description: Avd_like Location: 69916-70222 bp Feature: gene Location: 70284-71705 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 70656-71361 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 70656-713 61 bp Feature: gene Location: 71671-71946 bp Feature: gene Location: 72143-73816 bp Feature: domain Description: Glyco_hydro_66 Location: 72185-73808 bp Feature: domain Description: Glyco_hydro_66 Location: 72185-73 808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, Glyco_hydro_66 (pfam13199)

Seq: WDCL01000016.1 Bacteroides xylanisolvens strain BIOML-A12 scaffold16_size125402, whole genome shotgun sequence (125402 bp)
Overview 1 RT 1: 28066-31293 bp Neighborhood of RT #1 [28066, 31293] LRR_AMN1 RVT_N RVT-GII GIIM Feature: gene Location: 28066-28737 bp Feature: domain Description: LRR_AMN1 Location: 28441-28714 bp Feature: domain Description: LRR_AMN1 Location: 284 4 1-28714 bp Feature: gene Location: 28752-28886 bp Feature: gene Location: 28980-30395 bp Feature: domain Description: RVT_N Location: 28992-29217 bp Feature: domain Description: RVT_N Location: 28992-29217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29262-29907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29262-29907 bp Feature: domain Description: GIIM Note: maturase Location: 29961-30195 bp Feature: domain Description: GIIM Note: maturase Location: 29961-30195 bp Feature: gene Location: 30395-30694 bp Feature: gene Location: 30991-31293 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LRR_AMN1 (sd00034), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WDCL01000019.1 Bacteroides xylanisolvens strain BIOML-A12 scaffold19_size121855, whole genome shotgun sequence (121855 bp)
Overview 1 RT 1: 89077-98098 bp Neighborhood of RT #1 [89077, 98098] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 89077-95796 bp Feature: domain Description: Laminin_G_3 Location: 90520-90598 bp Feature: domain Description: Laminin_G_3 Location: 905 20-905 98 bp Feature: domain Description: Laminin_G_3 Location: 91249-91675 bp Feature: domain Description: Laminin_G_3 Location: 91249-91675 bp Feature: gene Location: 96041-96196 bp Feature: gene Location: 96313-97311 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 96526-97120 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 965 26-97120 bp Feature: gene Location: 97308-97616 bp Feature: gene Location: 97613-98098 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: WDCL01000001.1 Bacteroides xylanisolvens strain BIOML-A12 scaffold1_size324190, whole genome shotgun sequence (324190 bp)
Overview 1 RT 1: 156741-162784 bp Neighborhood of RT #1 [156741, 163437] NGN_SP_UpxY KOW_NusG Phage_int_SAM_5 INTN1_C_like RVT-Retrons REC Feature: gene Location: 156741-157319 bp Feature: domain Description: NGN_SP_UpxY Location: 156819-157101 bp Feature: domain Description: NGN_SP_UpxY Location: 156 819-157101 bp Feature: domain Description: KOW_NusG Location: 157152-157263 bp Feature: domain Description: KOW_NusG Location: 157152-15726 3 bp Feature: gene Location: 157655-158620 bp Feature: domain Description: Phage_int_SAM_5 Location: 157688-157931 bp Feature: domain Description: Phage_int_SAM_5 Location: 1576 88-157931 bp Feature: domain Description: INTN1_C_like Location: 158012-158534 bp Feature: domain Description: INTN1_C_like Location: 158012-158534 bp Feature: gene Location: 158896-161115 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 159097-159682 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 159097-1596 82 bp Feature: gene Location: 161093-161737 bp Feature: gene Location: 161734-163437 bp Feature: domain Description: REC Location: 162553-162784 bp Feature: domain Description: REC Location: 16 2553-16 2784 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NGN_SP_UpxY (cd09895), KOW_NusG (cd06091), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-Retrons, REC (smart00448)

Seq: WDCL01000046.1 Bacteroides xylanisolvens strain BIOML-A12 scaffold46_size39985, whole genome shotgun sequence (39985 bp)
Overview 1 RT 1: 9956-13072 bp Neighborhood of RT #1 [9956, 13072] RVT-UG27 Feature: gene Location: 9956-10117 bp Feature: gene Location: 10156-10413 bp Feature: gene Location: 10463-11728 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 10652-11288 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 10652-11288 bp Feature: gene Location: 11746-12372 bp Feature: gene Location: 12416-13072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WDCL01000061.1 Bacteroides xylanisolvens strain BIOML-A12 scaffold61_size25064, whole genome shotgun sequence (25064 bp)
Overview 1 RT 1: 20013-23445 bp Neighborhood of RT #1 [20013, 23522] DUF4134 RVT-GII Intron_maturas2 HNHc DUF4134 DUF4133 Feature: gene Location: 20013-20339 bp Feature: gene Location: 20363-20641 bp Feature: domain Description: DUF4134 Location: 20423-20624 bp Feature: domain Description: DUF4134 Location: 20423-20624 bp Feature: gene Location: 21183-22994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21447-22269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21447-22269 bp Feature: domain Description: Intron_maturas2 Location: 22458-22668 bp Feature: domain Description: Intron_maturas2 Location: 22458 -22668 bp Feature: domain Description: HNHc Note: nucleases Location: 22818-22923 bp Feature: domain Description: HNHc Note: nucleases Location: 228 18 -22923 bp Feature: gene Location: 23019-23213 bp Feature: domain Description: DUF4134 Location: 23109-23199 bp Feature: domain Description: DUF4134 Location: 23109-23199 bp Feature: gene Location: 23226-23522 bp Feature: domain Description: DUF4133 Location: 23268-23445 bp Feature: domain Description: DUF4133 Location: 23268 -23445 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571)

Seq: WDCL01000069.1 Bacteroides xylanisolvens strain BIOML-A12 scaffold69_size61932, whole genome shotgun sequence (62527 bp)
Overview 1 RT 1: 22663-27877 bp Neighborhood of RT #1 [22663, 27888] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 22663-22908 bp Feature: domain Description: Bac_Flav_CT_G Location: 22666-22891 bp Feature: domain Description: Bac_Flav_CT_G Location: 22666-2289 1 bp Feature: gene Location: 23111-23266 bp Feature: gene Location: 23464-25191 bp Feature: domain Description: RVT_N Location: 23569-23812 bp Feature: domain Description: RVT_N Location: 23569 -23812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23857-24505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23857-24505 bp Feature: domain Description: GIIM Note: maturase Location: 24556-24790 bp Feature: domain Description: GIIM Note: maturase Location: 24556-2479 0 bp Feature: gene Location: 25172-27559 bp Feature: domain Description: Bac_Flav_CT_G Location: 25292-27551 bp Feature: domain Description: Bac_Flav_CT_G Location: 2529 2-27551 bp Feature: gene Location: 27574-27888 bp Feature: domain Description: DUF3876 Location: 27628-27877 bp Feature: domain Description: DUF3876 Location: 27628-27877 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3876 (pfam12992)

Seq: WDCL01000006.1 Bacteroides xylanisolvens strain BIOML-A12 scaffold6_size244073, whole genome shotgun sequence (244073 bp)
Overview 1 RT 1: 7337-17295 bp 2 RT 2: 179893-192288 bp Neighborhood of RT #1 [7337, 17295] RGL11 Pgu1 Pgu1 RVT-GII GIIM RVT-GII GIIM DUF4990 Neighborhood of RT #2 [179893, 192419] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 7337-9283 bp Feature: domain Description: RGL11 Location: 7484-9224 bp Feature: domain Description: RGL11 Location: 7484-9224 bp Feature: gene Location: 9432-10922 bp Feature: domain Description: Pgu1 Location: 9597-9948 bp Feature: domain Description: Pgu1 Location: 9597-9948 bp Feature: domain Description: Pgu1 Location: 10041-10533 bp Feature: domain Description: Pgu1 Location: 10 041-10 533 bp Feature: gene Location: 11576-12982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11918-12536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11918-12536 bp Feature: domain Description: GIIM Note: maturase Location: 12593-12812 bp Feature: domain Description: GIIM Note: maturase Location: 12593-12812 bp Feature: gene Location: 13556-14848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13766-14423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13766-14423 bp Feature: domain Description: GIIM Note: maturase Location: 14501-14708 bp Feature: domain Description: GIIM Note: maturase Location: 14501-14708 bp Feature: gene Location: 15270-16814 bp Feature: domain Description: DUF4990 Location: 16386-16800 bp Feature: domain Description: DUF4990 Location: 16386-16800 bp Feature: gene Location: 16861-17295 bp Feature: gene Location: 179893-180717 bp Feature: domain Description: PDDEXK_2 Location: 179914-180592 bp Feature: domain Description: PDDEXK_2 Location: 179914-180592 bp Feature: gene Location: 180886-183093 bp Feature: gene Location: 183301-184431 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 183622-184165 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 183622-184165 bp Feature: gene Location: 184482-190523 bp Feature: domain Description: DUF4011 Location: 185712-186225 bp Feature: domain Description: DUF4011 Location: 185712-186225 bp Feature: domain Description: DEXXQc_SF1 Location: 186564-187005 bp Feature: domain Description: DEXXQc_SF1 Location: 186564-187005 bp Feature: domain Description: DEXXQc_SF1 Location: 188001-188751 bp Feature: domain Description: DEXXQc_SF1 Location: 188001-188751 bp Feature: domain Description: TIGR00376 Location: 188880-189270 bp Feature: domain Description: TIGR00376 Location: 188880-189270 bp Feature: domain Description: MTES_1575 Location: 189423-189708 bp Feature: domain Description: MTES_1575 Location: 189423-189708 bp Feature: domain Description: DUF3320 Location: 190038-190173 bp Feature: domain Description: DUF3320 Location: 190038-190173 bp Feature: gene Location: 190620-192419 bp Feature: domain Description: rpsA Location: 190689-192288 bp Feature: domain Description: rpsA Location: 190689-192288 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RGL11 (cl22850), Pgu1 (COG5434), RVT-GII, GIIM (pfam08388), DUF4990 (pfam16380), PDDEXK_2 (pfam12784), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative)
MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: WDCL01000009.1 Bacteroides xylanisolvens strain BIOML-A12 scaffold9_size225387, whole genome shotgun sequence (226122 bp)
Overview 1 RT 1: 71723-80134 bp 2 RT 2: 169078-171898 bp Neighborhood of RT #1 [71723, 81930] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs Laminin_G_3 pfam08757 LRR_AMN1 Neighborhood of RT #2 [169078, 171898] RVT-DGRs Feature: gene Location: 71723-72868 bp Feature: domain Description: Arm-DNA-bind_5 Location: 71747-71993 bp Feature: domain Description: Arm-DNA-bind_5 Location: 71747-71993 bp Feature: domain Description: Phage_int_SAM_5 Location: 72032-72317 bp Feature: domain Description: Phage_int_SAM_5 Location: 72032-72317 bp Feature: domain Description: INTN1_C_like Location: 72356-72830 bp Feature: domain Description: INTN1_C_like Location: 72356-72830 bp Feature: gene Location: 72918-73412 bp Feature: gene Location: 73414-74769 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 73690-74281 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 73690-74281 bp Feature: gene Location: 74914-75081 bp Feature: gene Location: 75142-81930 bp Feature: domain Description: Laminin_G_3 Location: 77578-77959 bp Feature: domain Description: Laminin_G_3 Location: 77578-77959 bp Feature: domain Description: pfam08757 Location: 78754-79078 bp Feature: domain Description: pfam08757 Location: 78754-79078 bp Feature: domain Description: LRR_AMN1 Location: 79690-80134 bp Feature: domain Description: LRR_AMN1 Location: 79690-80134 bp Feature: gene Location: 169078-169320 bp Feature: gene Location: 169506-169991 bp Feature: gene Location: 169988-171289 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 170201-170798 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 170201-170798 bp Feature: gene Location: 171386-171643 bp Feature: gene Location: 171665-171898 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-DGRs, Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034)