myRT

myRT report for GCA_009102705.1_ASM910270v1

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Seq: WDCK01000011.1 Bacteroides xylanisolvens strain BIOML-A11 scaffold11_size260690, whole genome shotgun sequence (260814 bp)
Overview 1 RT 1: 156961-163004 bp Neighborhood of RT #1 [156961, 163657] NGN_SP_UpxY KOW_NusG Phage_int_SAM_5 INTN1_C_like RVT-Retrons REC Feature: gene Location: 156961-157539 bp Feature: domain Description: NGN_SP_UpxY Location: 157039-157321 bp Feature: domain Description: NGN_SP_UpxY Location: 1 57039-1 57321 bp Feature: domain Description: KOW_NusG Location: 157372-157483 bp Feature: domain Description: KOW_NusG Location: 1 57372-1 57483 bp Feature: gene Location: 157875-158840 bp Feature: domain Description: Phage_int_SAM_5 Location: 157908-158151 bp Feature: domain Description: Phage_int_SAM_5 Location: 1 57908-1 581 51 bp Feature: domain Description: INTN1_C_like Location: 158232-158754 bp Feature: domain Description: INTN1 _C_like Location: 1 58232-1 58754 bp Feature: gene Location: 159116-161335 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 159317-159902 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 5931 7-1 59902 bp Feature: gene Location: 161313-161957 bp Feature: gene Location: 161954-163657 bp Feature: domain Description: REC Location: 162773-163004 bp Feature: domain Description: REC Location: 1 62773-1 63004 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NGN_SP_UpxY (cd09895), KOW_NusG (cd06091), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-Retrons, REC (smart00448)

Seq: WDCK01000013.1 Bacteroides xylanisolvens strain BIOML-A11 scaffold13_size182492, whole genome shotgun sequence (182492 bp)
Overview 1 RT 1: 100454-110623 bp Neighborhood of RT #1 [100454, 110661] Laminin_G_3 pfam08757 LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 100454-107242 bp Feature: domain Description: Laminin_G_3 Location: 102890-103271 bp Feature: domain Description: Laminin_G_3 Location: 102 890-1032 71 bp Feature: domain Description: pfam08757 Location: 104066-104390 bp Feature: domain Description: pfam08757 Location: 104066-104390 bp Feature: domain Description: LRR_AMN1 Location: 105002-105446 bp Feature: domain Description: LRR_AMN1 Location: 105002 -105446 bp Feature: gene Location: 107303-107470 bp Feature: gene Location: 107615-108970 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 107891-108482 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 107891-108482 bp Feature: gene Location: 108972-109466 bp Feature: gene Location: 109516-110661 bp Feature: domain Description: Arm-DNA-bind_5 Location: 109540-109786 bp Feature: domain Description: Arm-DNA-bind_5 Location: 109540-109786 bp Feature: domain Description: Phage_int_SAM_5 Location: 109825-110110 bp Feature: domain Description: Phage_int_SAM_5 Location: 10982 5-110110 bp Feature: domain Description: INTN1_C_like Location: 110149-110623 bp Feature: domain Description: INTN1_C_like Location: 110149-11062 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: WDCK01000014.1 Bacteroides xylanisolvens strain BIOML-A11 scaffold14_size122130, whole genome shotgun sequence (122130 bp)
Overview 1 RT 1: 89352-98373 bp Neighborhood of RT #1 [89352, 98373] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 89352-96071 bp Feature: domain Description: Laminin_G_3 Location: 90795-90873 bp Feature: domain Description: Laminin_G_3 Location: 90795-90873 bp Feature: domain Description: Laminin_G_3 Location: 91524-91950 bp Feature: domain Description: Laminin_G_3 Location: 91524-91950 bp Feature: gene Location: 96316-96471 bp Feature: gene Location: 96588-97586 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 96801-97395 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 96801-973 95 bp Feature: gene Location: 97583-97891 bp Feature: gene Location: 97888-98373 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: WDCK01000017.1 Bacteroides xylanisolvens strain BIOML-A11 scaffold17_size116732, whole genome shotgun sequence (116732 bp)
Overview 1 RT 1: 93830-97314 bp Neighborhood of RT #1 [93830, 97337] RVT_N RVT-GII GIIM LRR_AMN1 Feature: gene Location: 93830-94186 bp Feature: gene Location: 94709-95008 bp Feature: gene Location: 95092-96423 bp Feature: domain Description: RVT_N Location: 95095-95245 bp Feature: domain Description: RVT_N Location: 95095-9524 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95290-95935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95290-95935 bp Feature: domain Description: GIIM Note: maturase Location: 95989-96223 bp Feature: domain Description: GIIM Note: maturase Location: 95989-96223 bp Feature: gene Location: 96517-96651 bp Feature: gene Location: 96666-97337 bp Feature: domain Description: LRR_AMN1 Location: 97041-97314 bp Feature: domain Description: LRR_AMN1 Location: 9704 1-97314 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), LRR_AMN1 (sd00034)

Seq: WDCK01000021.1 Bacteroides xylanisolvens strain BIOML-A11 scaffold21_size100820, whole genome shotgun sequence (100779 bp)
Overview 1 RT 1: 7337-17295 bp Neighborhood of RT #1 [7337, 17295] RGL11 Pgu1 Pgu1 RVT-GII GIIM RVT-GII GIIM DUF4990 Feature: gene Location: 7337-9283 bp Feature: domain Description: RGL11 Location: 7484-9224 bp Feature: domain Description: RGL11 Location: 7484-9224 bp Feature: gene Location: 9432-10922 bp Feature: domain Description: Pgu1 Location: 9597-9948 bp Feature: domain Description: Pgu1 Location: 95 97-9948 bp Feature: domain Description: Pgu1 Location: 10041-10533 bp Feature: domain Description: Pgu1 Location: 10041-105 33 bp Feature: gene Location: 11576-12982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11918-12536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11918-125 36 bp Feature: domain Description: GIIM Note: maturase Location: 12593-12812 bp Feature: domain Description: GIIM Note: maturase Location: 125 93-12812 bp Feature: gene Location: 13556-14848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13766-14423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13766-14423 bp Feature: domain Description: GIIM Note: maturase Location: 14501-14708 bp Feature: domain Description: GIIM Note: maturase Location: 145 01-14708 bp Feature: gene Location: 15270-16814 bp Feature: domain Description: DUF4990 Location: 16386-16800 bp Feature: domain Description: DUF4990 Location: 16386-16800 bp Feature: gene Location: 16861-17295 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RGL11 (cl22850), Pgu1 (COG5434), RVT-GII, GIIM (pfam08388), DUF4990 (pfam16380)

Seq: WDCK01000029.1 Bacteroides xylanisolvens strain BIOML-A11 scaffold29_size64611, whole genome shotgun sequence (64611 bp)
Overview 1 RT 1: 4984-7804 bp Neighborhood of RT #1 [4984, 7804] RVT-DGRs Feature: gene Location: 4984-5226 bp Feature: gene Location: 5412-5861 bp Feature: gene Location: 5894-7195 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6107-6704 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6 107-6 704 bp Feature: gene Location: 7292-7549 bp Feature: gene Location: 7571-7804 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCK01000039.1 Bacteroides xylanisolvens strain BIOML-A11 scaffold39_size44981, whole genome shotgun sequence (44981 bp)
Overview 1 RT 1: 9956-13072 bp Neighborhood of RT #1 [9956, 13072] RVT-UG27 Feature: gene Location: 9956-10117 bp Feature: gene Location: 10156-10413 bp Feature: gene Location: 10463-11728 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 10652-11288 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 10652-11288 bp Feature: gene Location: 11746-12372 bp Feature: gene Location: 12416-13072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WDCK01000053.1 Bacteroides xylanisolvens strain BIOML-A11 scaffold53_size26013, whole genome shotgun sequence (26013 bp)
Overview 1 RT 1: 1543-4685 bp Neighborhood of RT #1 [1543, 4702] DUF4133 DUF4134 RVT-GII Intron_maturas2 HNHc DUF4134 Feature: gene Location: 1543-1839 bp Feature: domain Description: DUF4133 Location: 1585-1762 bp Feature: domain Description: DUF4133 Location: 158 5-1762 bp Feature: gene Location: 1852-2046 bp Feature: domain Description: DUF4134 Location: 1942-2032 bp Feature: domain Description: DUF4134 Location: 1942-2032 bp Feature: gene Location: 2071-3882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2335-3157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2335-3157 bp Feature: domain Description: Intron_maturas2 Location: 3346-3556 bp Feature: domain Description: Intron_maturas2 Location: 3346-3556 bp Feature: domain Description: HNHc Note: nucleases Location: 3706-3811 bp Feature: domain Description: HNHc Note: nucleases Location: 3706-38 11 bp Feature: gene Location: 4062-4412 bp Feature: gene Location: 4424-4702 bp Feature: domain Description: DUF4134 Location: 4484-4685 bp Feature: domain Description: DUF4134 Location: 448 4-468 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDCK01000005.1 Bacteroides xylanisolvens strain BIOML-A11 scaffold5_size270160, whole genome shotgun sequence (270160 bp)
Overview 1 RT 1: 79154-91549 bp Neighborhood of RT #1 [79154, 91680] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 79154-79978 bp Feature: domain Description: PDDEXK_2 Location: 79175-79853 bp Feature: domain Description: PDDEXK_2 Location: 79 175-79 853 bp Feature: gene Location: 80147-82354 bp Feature: gene Location: 82562-83692 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 82883-83426 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 82883-83426 bp Feature: gene Location: 83743-89784 bp Feature: domain Description: DUF4011 Location: 84973-85486 bp Feature: domain Description: DUF4011 Location: 849 73-85486 bp Feature: domain Description: DEXXQc_SF1 Location: 85825-86266 bp Feature: domain Description: DEXXQc_SF1 Location: 85825-86266 bp Feature: domain Description: DEXXQc_SF1 Location: 87262-88012 bp Feature: domain Description: DEXXQc_SF1 Location: 87262-88012 bp Feature: domain Description: TIGR00376 Location: 88141-88531 bp Feature: domain Description: TIGR00376 Location: 88141-88531 bp Feature: domain Description: MTES_1575 Location: 88684-88969 bp Feature: domain Description: MTES_1575 Location: 88684-889 69 bp Feature: domain Description: DUF3320 Location: 89299-89434 bp Feature: domain Description: DUF3320 Location: 89 29 9 -89 434 bp Feature: gene Location: 89881-91680 bp Feature: domain Description: rpsA Location: 89950-91549 bp Feature: domain Description: rpsA Location: 89 9 50-9 1549 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: WDCK01000063.1 Bacteroides xylanisolvens strain BIOML-A11 scaffold63_size19511, whole genome shotgun sequence (19511 bp)
Overview 1 RT 1: 10269-15785 bp Neighborhood of RT #1 [10269, 15826] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4133 Feature: gene Location: 10269-10583 bp Feature: domain Description: DUF3876 Location: 10323-10572 bp Feature: domain Description: DUF3876 Location: 10 323-10 572 bp Feature: gene Location: 10598-12985 bp Feature: domain Description: Bac_Flav_CT_G Location: 10718-12977 bp Feature: domain Description: Bac_Flav_CT_G Location: 10 718-12977 bp Feature: gene Location: 12966-14693 bp Feature: domain Description: RVT_N Location: 13071-13314 bp Feature: domain Description: RVT_N Location: 13071-13314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13359-14007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13359-14007 bp Feature: domain Description: GIIM Note: maturase Location: 14058-14292 bp Feature: domain Description: GIIM Note: maturase Location: 14058-14292 bp Feature: gene Location: 15249-15494 bp Feature: domain Description: Bac_Flav_CT_G Location: 15252-15477 bp Feature: domain Description: Bac_Flav_CT_G Location: 15252-15477 bp Feature: gene Location: 15491-15826 bp Feature: domain Description: DUF4133 Location: 15518-15785 bp Feature: domain Description: DUF4133 Location: 15518-15785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571)

Seq: WDCK01000008.1 Bacteroides xylanisolvens strain BIOML-A11 scaffold8_size203746, whole genome shotgun sequence (203746 bp)
Overview 1 RT 1: 178792-182563 bp Neighborhood of RT #1 [178792, 182563] RVT-DGRs Feature: gene Location: 178792-179082 bp Feature: gene Location: 179092-180450 bp Feature: gene Location: 180782-181969 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 181115-181742 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1811 15-181742 bp Feature: gene Location: 181932-182360 bp Feature: gene Location: 182357-182563 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCK01000009.1 Bacteroides xylanisolvens strain BIOML-A11 scaffold9_size359635, whole genome shotgun sequence (359635 bp)
Overview 1 RT 1: 179397-181369 bp 2 RT 2: 254969-259797 bp Neighborhood of RT #1 [179397, 181455] Translocase_SecB RVT-GII group_II_RT_mat DDE_Tnp_IS66_C Neighborhood of RT #2 [254969, 259797] Toprim_2 RVT-GII Intron_maturas2 Feature: gene Location: 179397-179813 bp Feature: domain Description: Translocase_SecB Location: 179454-179778 bp Feature: domain Description: Translocase_SecB Location: 179454-179778 bp Feature: gene Location: 179842-180075 bp Feature: gene Location: 180480-180800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 180483-180720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 180483-180720 bp Feature: gene Location: 180857-181159 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 180905-181142 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 180905-181142 bp Feature: gene Location: 181255-181455 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 181267-181369 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1812 67-181369 bp Feature: gene Location: 254969-256372 bp Feature: gene Location: 256655-257584 bp Feature: domain Description: Toprim_2 Location: 257207-257495 bp Feature: domain Description: Toprim_2 Location: 257207-257495 bp Feature: gene Location: 257556-259364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257820-258642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257820-258642 bp Feature: domain Description: Intron_maturas2 Location: 258711-259020 bp Feature: domain Description: Intron_maturas2 Location: 258711-259020 bp Feature: gene Location: 259366-259548 bp Feature: gene Location: 259654-259797 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Translocase_SecB (cl00251), RVT-GII, group_II_RT_mat (TIGR04416), DDE_Tnp_IS66_C (pfam13817), Toprim_2 (pfam13155), Intron_maturas2 (pfam01348)