myRT

myRT report for GCA_009102725.1_ASM910272v1

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Seq: WDCI01000010.1 Bacteroides xylanisolvens strain BIOML-A9 scaffold10_size170444, whole genome shotgun sequence (170444 bp)
Overview 1 RT 1: 97155-103795 bp Neighborhood of RT #1 [97155, 103851] REC RVT-Retrons Phage_int_SAM_5 INTN1_C_like NGN_SP_UpxY KOW_NusG Feature: gene Location: 97155-98846 bp Feature: domain Description: REC Location: 97962-98193 bp Feature: domain Description: REC Location: 97962-981 93 bp Feature: gene Location: 98855-99499 bp Feature: gene Location: 99477-101696 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 99678-100263 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 99678-1 00263 bp Feature: gene Location: 101972-102937 bp Feature: domain Description: Phage_int_SAM_5 Location: 102005-102248 bp Feature: domain Description: Phage_int_SAM_5 Location: 1 02005-1 02248 bp Feature: domain Description: INTN1_C_like Location: 102329-102851 bp Feature: domain Description: INTN1 _C_like Location: 1 02329-1 02851 bp Feature: gene Location: 103273-103851 bp Feature: domain Description: NGN_SP_UpxY Location: 103351-103633 bp Feature: domain Description: NGN_SP_UpxY Location: 1 03351 -1 03633 bp Feature: domain Description: KOW_NusG Location: 103684-103795 bp Feature: domain Description: KOW_NusG Location: 1 03684-1 03795 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT REC (smart00448), RVT-Retrons, Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), NGN_SP_UpxY (cd09895), KOW_NusG (cd06091)

Seq: WDCI01000012.1 Bacteroides xylanisolvens strain BIOML-A9 scaffold12_size155657, whole genome shotgun sequence (155657 bp)
Overview 1 RT 1: 73728-83897 bp Neighborhood of RT #1 [73728, 83935] Laminin_G_3 pfam08757 LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 73728-80516 bp Feature: domain Description: Laminin_G_3 Location: 76164-76545 bp Feature: domain Description: Laminin_G_3 Location: 76164-76545 bp Feature: domain Description: pfam08757 Location: 77340-77664 bp Feature: domain Description: pfam08757 Location: 77340-77664 bp Feature: domain Description: LRR_AMN1 Location: 78276-78720 bp Feature: domain Description: LRR_AMN1 Location: 782 76-7872 0 bp Feature: gene Location: 80577-80744 bp Feature: gene Location: 80889-82244 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 81165-81756 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 81165-81756 bp Feature: gene Location: 82246-82740 bp Feature: gene Location: 82790-83935 bp Feature: domain Description: Arm-DNA-bind_5 Location: 82814-83060 bp Feature: domain Description: Arm-DNA-bind_5 Location: 82 814-83060 bp Feature: domain Description: Phage_int_SAM_5 Location: 83099-83384 bp Feature: domain Description: Phage_int_SAM_5 Location: 83099-83384 bp Feature: domain Description: INTN1_C_like Location: 83423-83897 bp Feature: domain Description: INTN1_C_like Location: 8342 3-83897 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: WDCI01000013.1 Bacteroides xylanisolvens strain BIOML-A9 scaffold13_size143325, whole genome shotgun sequence (143325 bp)
Overview 1 RT 1: 79153-91548 bp Neighborhood of RT #1 [79153, 91679] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 79153-79977 bp Feature: domain Description: PDDEXK_2 Location: 79174-79852 bp Feature: domain Description: PDDEXK_2 Location: 79174-79852 bp Feature: gene Location: 80146-82353 bp Feature: gene Location: 82561-83691 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 82882-83425 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 82882-83 425 bp Feature: gene Location: 83742-89783 bp Feature: domain Description: DUF4011 Location: 84972-85485 bp Feature: domain Description: DUF4011 Location: 84972-85485 bp Feature: domain Description: DEXXQc_SF1 Location: 85824-86265 bp Feature: domain Description: DEXXQc_SF1 Location: 85824-86265 bp Feature: domain Description: DEXXQc_SF1 Location: 87261-88011 bp Feature: domain Description: DEXXQc_SF1 Location: 87261-88011 bp Feature: domain Description: TIGR00376 Location: 88140-88530 bp Feature: domain Description: TIGR003 76 Location: 88140-8853 0 bp Feature: domain Description: MTES_1575 Location: 88683-88968 bp Feature: domain Description: MTES_1575 Location: 88683 -88968 bp Feature: domain Description: DUF3320 Location: 89298-89433 bp Feature: domain Description: DUF3 3 20 Location: 89298-8943 3 bp Feature: gene Location: 89880-91679 bp Feature: domain Description: rpsA Location: 89949-91548 bp Feature: domain Description: rpsA Location: 89949-91548 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: WDCI01000016.1 Bacteroides xylanisolvens strain BIOML-A9 scaffold16_size121566, whole genome shotgun sequence (121566 bp)
Overview 1 RT 1: 88788-97809 bp Neighborhood of RT #1 [88788, 97809] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 88788-95507 bp Feature: domain Description: Laminin_G_3 Location: 90231-90309 bp Feature: domain Description: Laminin_G_3 Location: 90231-90309 bp Feature: domain Description: Laminin_G_3 Location: 90960-91386 bp Feature: domain Description: Laminin_G_3 Location: 90960-91386 bp Feature: gene Location: 95752-95907 bp Feature: gene Location: 96024-97022 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 96237-96831 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 96237-96831 bp Feature: gene Location: 97019-97327 bp Feature: gene Location: 97324-97809 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: WDCI01000023.1 Bacteroides xylanisolvens strain BIOML-A9 scaffold23_size100804, whole genome shotgun sequence (100804 bp)
Overview 1 RT 1: 7337-17295 bp Neighborhood of RT #1 [7337, 17295] RGL11 Pgu1 Pgu1 RVT-GII GIIM RVT-GII GIIM DUF4990 Feature: gene Location: 7337-9283 bp Feature: domain Description: RGL11 Location: 7484-9224 bp Feature: domain Description: RGL11 Location: 7484-9224 bp Feature: gene Location: 9432-10922 bp Feature: domain Description: Pgu1 Location: 9597-9948 bp Feature: domain Description: Pgu1 Location: 95 97-9948 bp Feature: domain Description: Pgu1 Location: 10041-10533 bp Feature: domain Description: Pgu1 Location: 10041-105 33 bp Feature: gene Location: 11576-12982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11918-12536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11918-125 36 bp Feature: domain Description: GIIM Note: maturase Location: 12593-12812 bp Feature: domain Description: GIIM Note: maturase Location: 125 93-12812 bp Feature: gene Location: 13556-14848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13766-14423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13766-14423 bp Feature: domain Description: GIIM Note: maturase Location: 14501-14708 bp Feature: domain Description: GIIM Note: maturase Location: 145 01-14708 bp Feature: gene Location: 15270-16814 bp Feature: domain Description: DUF4990 Location: 16386-16800 bp Feature: domain Description: DUF4990 Location: 16386-16800 bp Feature: gene Location: 16861-17295 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RGL11 (cl22850), Pgu1 (COG5434), RVT-GII, GIIM (pfam08388), DUF4990 (pfam16380)

Seq: WDCI01000028.1 Bacteroides xylanisolvens strain BIOML-A9 scaffold28_size87526, whole genome shotgun sequence (87526 bp)
Overview 1 RT 1: 63056-66198 bp Neighborhood of RT #1 [63056, 66215] DUF4133 DUF4134 RVT-GII Intron_maturas2 HNHc DUF4134 Feature: gene Location: 63056-63352 bp Feature: domain Description: DUF4133 Location: 63098-63275 bp Feature: domain Description: DUF4133 Location: 6 3098-6 3275 bp Feature: gene Location: 63365-63559 bp Feature: domain Description: DUF4134 Location: 63455-63545 bp Feature: domain Description: DUF4134 Location: 6 3455-6 3545 bp Feature: gene Location: 63584-65395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63848-64670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 3848-6 46 70 bp Feature: domain Description: Intron_maturas2 Location: 64859-65069 bp Feature: domain Description: Intron_maturas2 Location: 6 4859-6 506 9 bp Feature: domain Description: HNHc Note: nucleases Location: 65219-65324 bp Feature: domain Description: HNHc Note: nucleases Location: 6 5219-6 5324 bp Feature: gene Location: 65575-65925 bp Feature: gene Location: 65937-66215 bp Feature: domain Description: DUF4134 Location: 65997-66198 bp Feature: domain Description: DUF4134 Location: 6 5997-6 6 198 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDCI01000036.1 Bacteroides xylanisolvens strain BIOML-A9 scaffold36_size64611, whole genome shotgun sequence (64611 bp)
Overview 1 RT 1: 4984-7804 bp Neighborhood of RT #1 [4984, 7804] RVT-DGRs Feature: gene Location: 4984-5226 bp Feature: gene Location: 5412-5861 bp Feature: gene Location: 5894-7195 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6107-6704 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6107 -67 04 bp Feature: gene Location: 7292-7549 bp Feature: gene Location: 7571-7804 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCI01000038.1 Bacteroides xylanisolvens strain BIOML-A9 scaffold38_size62161, whole genome shotgun sequence (62161 bp)
Overview 1 RT 1: 38047-42743 bp Neighborhood of RT #1 [38047, 42766] ArdC RVT_N RVT-GII GIIM LRR_AMN1 Feature: gene Location: 38047-39021 bp Feature: domain Description: ArdC Location: 38089-38977 bp Feature: domain Description: ArdC Location: 38 08 9-38 977 bp Feature: gene Location: 39259-39615 bp Feature: gene Location: 40521-41852 bp Feature: domain Description: RVT_N Location: 40524-40674 bp Feature: domain Description: RVT_N Location: 40524-40674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40719-41364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40719-41364 bp Feature: domain Description: GIIM Note: maturase Location: 41418-41652 bp Feature: domain Description: GIIM Note: maturase Location: 41418 -41652 bp Feature: gene Location: 41946-42080 bp Feature: gene Location: 42095-42766 bp Feature: domain Description: LRR_AMN1 Location: 42470-42743 bp Feature: domain Description: LRR_AMN1 Location: 42470-42743 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdC (COG4227), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), LRR_AMN1 (sd00034)

Seq: WDCI01000048.1 Bacteroides xylanisolvens strain BIOML-A9 scaffold48_size42736, whole genome shotgun sequence (42736 bp)
Overview 1 RT 1: 9956-13072 bp Neighborhood of RT #1 [9956, 13072] RVT-UG27 Feature: gene Location: 9956-10117 bp Feature: gene Location: 10156-10413 bp Feature: gene Location: 10463-11728 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 10652-11288 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 10652-11288 bp Feature: gene Location: 11746-12372 bp Feature: gene Location: 12416-13072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WDCI01000071.1 Bacteroides xylanisolvens strain BIOML-A9 scaffold71_size18625, whole genome shotgun sequence (18625 bp)
Overview 1 RT 1: 9380-14896 bp Neighborhood of RT #1 [9380, 14937] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4133 Feature: gene Location: 9380-9694 bp Feature: domain Description: DUF3876 Location: 9434-9683 bp Feature: domain Description: DUF3876 Location: 9434-9683 bp Feature: gene Location: 9709-12096 bp Feature: domain Description: Bac_Flav_CT_G Location: 9829-12088 bp Feature: domain Description: Bac_Flav_CT_G Location: 9829-12088 bp Feature: gene Location: 12077-13804 bp Feature: domain Description: RVT_N Location: 12182-12425 bp Feature: domain Description: RVT_N Location: 12182-12425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12470-13118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12470-13118 bp Feature: domain Description: GIIM Note: maturase Location: 13169-13403 bp Feature: domain Description: GIIM Note: maturase Location: 13169-13403 bp Feature: gene Location: 14360-14605 bp Feature: domain Description: Bac_Flav_CT_G Location: 14363-14588 bp Feature: domain Description: Bac_Flav_CT_G Location: 14363-14588 bp Feature: gene Location: 14602-14937 bp Feature: domain Description: DUF4133 Location: 14629-14896 bp Feature: domain Description: DUF4133 Location: 14629-14896 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571)

Seq: WDCI01000007.1 Bacteroides xylanisolvens strain BIOML-A9 scaffold7_size204091, whole genome shotgun sequence (204091 bp)
Overview 1 RT 1: 179137-182908 bp Neighborhood of RT #1 [179137, 182908] RVT-DGRs Feature: gene Location: 179137-179427 bp Feature: gene Location: 179437-180795 bp Feature: gene Location: 181127-182314 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 181460-182087 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 181460-182087 bp Feature: gene Location: 182277-182705 bp Feature: gene Location: 182702-182908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCI01000008.1 Bacteroides xylanisolvens strain BIOML-A9 scaffold8_size196669, whole genome shotgun sequence (196669 bp)
Overview 1 RT 1: 16431-18403 bp 2 RT 2: 92003-97129 bp Neighborhood of RT #1 [16431, 18489] Translocase_SecB RVT-GII group_II_RT_mat DDE_Tnp_IS66_C Neighborhood of RT #2 [92003, 97129] Toprim_2 RVT-GII Intron_maturas2 Feature: gene Location: 16431-16847 bp Feature: domain Description: Translocase_SecB Location: 16488-16812 bp Feature: domain Description: Translocase_SecB Location: 16488-16812 bp Feature: gene Location: 16876-17109 bp Feature: gene Location: 17514-17834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17517-17754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17517-17754 bp Feature: gene Location: 17891-18193 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 17939-18176 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 17939-18176 bp Feature: gene Location: 18289-18489 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 18301-18403 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 18301-18403 bp Feature: gene Location: 92003-93406 bp Feature: gene Location: 93689-94618 bp Feature: domain Description: Toprim_2 Location: 94241-94529 bp Feature: domain Description: Toprim_2 Location: 94241-94529 bp Feature: gene Location: 94590-96398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94854-95676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94854-95676 bp Feature: domain Description: Intron_maturas2 Location: 95745-96054 bp Feature: domain Description: Intron_maturas2 Location: 95745-96054 bp Feature: gene Location: 96688-96831 bp Feature: gene Location: 96947-97129 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Translocase_SecB (cl00251), RVT-GII, group_II_RT_mat (TIGR04416), DDE_Tnp_IS66_C (pfam13817), Toprim_2 (pfam13155), Intron_maturas2 (pfam01348)