myRT

myRT report for GCA_009102755.1_ASM910275v1

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Seq: WDCG01000010.1 Bacteroides xylanisolvens strain BIOML-A7 scaffold10_size182384, whole genome shotgun sequence (182384 bp)
Overview 1 RT 1: 100455-110624 bp Neighborhood of RT #1 [100455, 110662] Laminin_G_3 pfam08757 LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 100455-107243 bp Feature: domain Description: Laminin_G_3 Location: 102891-103272 bp Feature: domain Description: Laminin_G_3 Location: 1 02891 -1 03272 bp Feature: domain Description: pfam08757 Location: 104067-104391 bp Feature: domain Description: pfam08757 Location: 1 04067-1 04391 bp Feature: domain Description: LRR_AMN1 Location: 105003-105447 bp Feature: domain Description: LRR_AMN1 Location: 1 05003-1 05447 bp Feature: gene Location: 107304-107471 bp Feature: gene Location: 107616-108971 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 107892-108483 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 07892-1 08483 bp Feature: gene Location: 108973-109467 bp Feature: gene Location: 109517-110662 bp Feature: domain Description: Arm-DNA-bind_5 Location: 109541-109787 bp Feature: domain Description: Arm-DNA-bind_5 Location: 1 09541 -1 09787 bp Feature: domain Description: Phage_int_SAM_5 Location: 109826-110111 bp Feature: domain Description: Phage_int_SAM_5 Location: 1 09826-1 1 01 1 1 bp Feature: domain Description: INTN1_C_like Location: 110150-110624 bp Feature: domain Description: INTN1 _C_like Location: 1 1 01 50-1 1 0624 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: WDCG01000015.1 Bacteroides xylanisolvens strain BIOML-A7 scaffold15_size126772, whole genome shotgun sequence (126684 bp)
Overview 1 RT 1: 29349-32576 bp Neighborhood of RT #1 [29349, 32576] LRR_AMN1 RVT_N RVT-GII GIIM Feature: gene Location: 29349-30020 bp Feature: domain Description: LRR_AMN1 Location: 29724-29997 bp Feature: domain Description: LRR_AMN1 Location: 2 972 4-2 9997 bp Feature: gene Location: 30035-30169 bp Feature: gene Location: 30263-31678 bp Feature: domain Description: RVT_N Location: 30275-30500 bp Feature: domain Description: RVT_N Location: 302 75-30500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30545-31190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30545-31190 bp Feature: domain Description: GIIM Note: maturase Location: 31244-31478 bp Feature: domain Description: GIIM Note: maturase Location: 312 44-31478 bp Feature: gene Location: 31678-31977 bp Feature: gene Location: 32274-32576 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LRR_AMN1 (sd00034), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WDCG01000016.1 Bacteroides xylanisolvens strain BIOML-A7 scaffold16_size121566, whole genome shotgun sequence (121566 bp)
Overview 1 RT 1: 88788-97809 bp Neighborhood of RT #1 [88788, 97809] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 88788-95507 bp Feature: domain Description: Laminin_G_3 Location: 90231-90309 bp Feature: domain Description: Laminin_G_3 Location: 9023 1-903 09 bp Feature: domain Description: Laminin_G_3 Location: 90960-91386 bp Feature: domain Description: Laminin_G_3 Location: 90960-913 86 bp Feature: gene Location: 95752-95907 bp Feature: gene Location: 96024-97022 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 96237-96831 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9623 7-9683 1 bp Feature: gene Location: 97019-97327 bp Feature: gene Location: 97324-97809 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: WDCG01000019.1 Bacteroides xylanisolvens strain BIOML-A7 scaffold19_size119917, whole genome shotgun sequence (119542 bp)
Overview 1 RT 1: 32409-35467 bp Neighborhood of RT #1 [32409, 35544] DUF4134 RVT-GII Intron_maturas2 HNHc DUF4134 DUF4133 Feature: gene Location: 32409-32663 bp Feature: domain Description: DUF4134 Location: 32445-32646 bp Feature: domain Description: DUF4 134 Location: 324 4 5-3264 6 bp Feature: gene Location: 32675-33025 bp Feature: gene Location: 33205-35016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33469-34291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334 69-34 291 bp Feature: domain Description: Intron_maturas2 Location: 34480-34690 bp Feature: domain Description: Intron_maturas2 Location: 34 4 80-34 690 bp Feature: domain Description: HNHc Note: nucleases Location: 34840-34945 bp Feature: domain Description: HNHc Note: nucleases Location: 34 84 0-34 94 5 bp Feature: gene Location: 35041-35235 bp Feature: domain Description: DUF4134 Location: 35131-35221 bp Feature: domain Description: DUF4 134 Location: 35131-35221 bp Feature: gene Location: 35248-35544 bp Feature: domain Description: DUF4133 Location: 35290-35467 bp Feature: domain Description: DUF4 133 Location: 35290-354 67 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571)

Seq: WDCG01000022.1 Bacteroides xylanisolvens strain BIOML-A7 scaffold22_size100731, whole genome shotgun sequence (100731 bp)
Overview 1 RT 1: 7337-17295 bp Neighborhood of RT #1 [7337, 17295] RGL11 Pgu1 Pgu1 RVT-GII GIIM RVT-GII GIIM DUF4990 Feature: gene Location: 7337-9283 bp Feature: domain Description: RGL11 Location: 7484-9224 bp Feature: domain Description: RGL11 Location: 7484-9224 bp Feature: gene Location: 9432-10922 bp Feature: domain Description: Pgu1 Location: 9597-9948 bp Feature: domain Description: Pgu1 Location: 95 97-9948 bp Feature: domain Description: Pgu1 Location: 10041-10533 bp Feature: domain Description: Pgu1 Location: 10041-105 33 bp Feature: gene Location: 11576-12982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11918-12536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11918-125 36 bp Feature: domain Description: GIIM Note: maturase Location: 12593-12812 bp Feature: domain Description: GIIM Note: maturase Location: 125 93-12812 bp Feature: gene Location: 13556-14848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13766-14423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13766-14423 bp Feature: domain Description: GIIM Note: maturase Location: 14501-14708 bp Feature: domain Description: GIIM Note: maturase Location: 145 01-14708 bp Feature: gene Location: 15270-16814 bp Feature: domain Description: DUF4990 Location: 16386-16800 bp Feature: domain Description: DUF4990 Location: 16386-16800 bp Feature: gene Location: 16861-17295 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RGL11 (cl22850), Pgu1 (COG5434), RVT-GII, GIIM (pfam08388), DUF4990 (pfam16380)

Seq: WDCG01000031.1 Bacteroides xylanisolvens strain BIOML-A7 scaffold31_size143457, whole genome shotgun sequence (143470 bp)
Overview 1 RT 1: 79298-91693 bp Neighborhood of RT #1 [79298, 91824] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 79298-80122 bp Feature: domain Description: PDDEXK_2 Location: 79319-79997 bp Feature: domain Description: PDDEXK_2 Location: 79319-79997 bp Feature: gene Location: 80291-82498 bp Feature: gene Location: 82706-83836 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 83027-83570 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 83027-83570 bp Feature: gene Location: 83887-89928 bp Feature: domain Description: DUF4011 Location: 85117-85630 bp Feature: domain Description: DUF4011 Location: 85117-856 30 bp Feature: domain Description: DEXXQc_SF1 Location: 85969-86410 bp Feature: domain Description: DEXXQc_SF1 Location: 8596 9-86 410 bp Feature: domain Description: DEXXQc_SF1 Location: 87406-88156 bp Feature: domain Description: DEXXQc_SF1 Location: 87406 -88156 bp Feature: domain Description: TIGR00376 Location: 88285-88675 bp Feature: domain Description: TIGR00376 Location: 88285-886 75 bp Feature: domain Description: MTES_1575 Location: 88828-89113 bp Feature: domain Description: MTES_1575 Location: 88828-89113 bp Feature: domain Description: DUF3320 Location: 89443-89578 bp Feature: domain Description: DUF3320 Location: 89443-89578 bp Feature: gene Location: 90025-91824 bp Feature: domain Description: rpsA Location: 90094-91693 bp Feature: domain Description: rpsA Location: 90094-916 93 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: WDCG01000034.1 Bacteroides xylanisolvens strain BIOML-A7 scaffold34_size64578, whole genome shotgun sequence (64578 bp)
Overview 1 RT 1: 4951-7771 bp Neighborhood of RT #1 [4951, 7771] RVT-DGRs Feature: gene Location: 4951-5193 bp Feature: gene Location: 5379-5828 bp Feature: gene Location: 5861-7162 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6074-6671 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 607 4-667 1 bp Feature: gene Location: 7259-7516 bp Feature: gene Location: 7538-7771 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCG01000041.1 Bacteroides xylanisolvens strain BIOML-A7 scaffold41_size42645, whole genome shotgun sequence (42537 bp)
Overview 1 RT 1: 12233-15349 bp Neighborhood of RT #1 [12233, 15349] RVT-UG27 Feature: gene Location: 12233-12394 bp Feature: gene Location: 12433-12690 bp Feature: gene Location: 12740-14005 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 12929-13565 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 12929-13565 bp Feature: gene Location: 14023-14649 bp Feature: gene Location: 14693-15349 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WDCG01000005.1 Bacteroides xylanisolvens strain BIOML-A7 scaffold5_size233972, whole genome shotgun sequence (233972 bp)
Overview 1 RT 1: 66525-72568 bp Neighborhood of RT #1 [66525, 73221] NGN_SP_UpxY KOW_NusG Phage_int_SAM_5 INTN1_C_like RVT-Retrons REC Feature: gene Location: 66525-67103 bp Feature: domain Description: NGN_SP_UpxY Location: 66603-66885 bp Feature: domain Description: NGN_SP_UpxY Location: 66603-66885 bp Feature: domain Description: KOW_NusG Location: 66936-67047 bp Feature: domain Description: KOW_NusG Location: 669 36-67047 bp Feature: gene Location: 67439-68404 bp Feature: domain Description: Phage_int_SAM_5 Location: 67472-67715 bp Feature: domain Description: Phage_int_SAM_5 Location: 67472-67715 bp Feature: domain Description: INTN1_C_like Location: 67796-68318 bp Feature: domain Description: INTN1_C_like Location: 6779 6-68318 bp Feature: gene Location: 68680-70899 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 68881-69466 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 68881-69 466 bp Feature: gene Location: 70877-71521 bp Feature: gene Location: 71518-73221 bp Feature: domain Description: REC Location: 72337-72568 bp Feature: domain Description: REC Location: 72337-72568 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NGN_SP_UpxY (cd09895), KOW_NusG (cd06091), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-Retrons, REC (smart00448)

Seq: WDCG01000060.1 Bacteroides xylanisolvens strain BIOML-A7 scaffold60_size19016, whole genome shotgun sequence (18931 bp)
Overview 1 RT 1: 4021-9235 bp Neighborhood of RT #1 [4021, 9246] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 4021-4266 bp Feature: domain Description: Bac_Flav_CT_G Location: 4024-4249 bp Feature: domain Description: Bac_Flav_CT_G Location: 4024-4249 bp Feature: gene Location: 4478-4624 bp Feature: gene Location: 4822-6549 bp Feature: domain Description: RVT_N Location: 4927-5170 bp Feature: domain Description: RVT_N Location: 4927-5170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5215-5863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5215-5863 bp Feature: domain Description: GIIM Note: maturase Location: 5914-6148 bp Feature: domain Description: GIIM Note: maturase Location: 5914-6148 bp Feature: gene Location: 6530-8917 bp Feature: domain Description: Bac_Flav_CT_G Location: 6650-8909 bp Feature: domain Description: Bac_Flav_CT_G Location: 6650-8909 bp Feature: gene Location: 8932-9246 bp Feature: domain Description: DUF3876 Location: 8986-9235 bp Feature: domain Description: DUF3876 Location: 8986-9235 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3876 (pfam12992)

Seq: WDCG01000007.1 Bacteroides xylanisolvens strain BIOML-A7 scaffold7_size211950, whole genome shotgun sequence (211850 bp)
Overview 1 RT 1: 186896-190667 bp Neighborhood of RT #1 [186896, 190667] RVT-DGRs Feature: gene Location: 186896-187186 bp Feature: gene Location: 187196-188554 bp Feature: gene Location: 188886-190073 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 189219-189846 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 189219-189846 bp Feature: gene Location: 190036-190464 bp Feature: gene Location: 190461-190667 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCG01000008.1 Bacteroides xylanisolvens strain BIOML-A7 scaffold8_size383476, whole genome shotgun sequence (383289 bp)
Overview 1 RT 1: 203051-205023 bp 2 RT 2: 278623-283451 bp Neighborhood of RT #1 [203051, 205109] Translocase_SecB RVT-GII group_II_RT_mat DDE_Tnp_IS66_C Neighborhood of RT #2 [278623, 283451] Toprim_2 RVT-GII Intron_maturas2 Feature: gene Location: 203051-203467 bp Feature: domain Description: Translocase_SecB Location: 203108-203432 bp Feature: domain Description: Translocase_SecB Location: 203108-203432 bp Feature: gene Location: 203496-203729 bp Feature: gene Location: 204134-204454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204137-204374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204137-204374 bp Feature: gene Location: 204511-204813 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 204559-204796 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 204559-204796 bp Feature: gene Location: 204909-205109 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 204921-205023 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 204921-205023 bp Feature: gene Location: 278623-280026 bp Feature: gene Location: 280309-281238 bp Feature: domain Description: Toprim_2 Location: 280861-281149 bp Feature: domain Description: Toprim_2 Location: 280861-281149 bp Feature: gene Location: 281210-283018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 281474-282296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 281474-282296 bp Feature: domain Description: Intron_maturas2 Location: 282365-282674 bp Feature: domain Description: Intron_maturas2 Location: 282365-282674 bp Feature: gene Location: 283020-283202 bp Feature: gene Location: 283308-283451 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Translocase_SecB (cl00251), RVT-GII, group_II_RT_mat (TIGR04416), DDE_Tnp_IS66_C (pfam13817), Toprim_2 (pfam13155), Intron_maturas2 (pfam01348)