myRT

myRT report for GCA_009102765.1_ASM910276v1

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Seq: WDCH01000010.1 Bacteroides xylanisolvens strain BIOML-A8 scaffold10_size203746, whole genome shotgun sequence (203746 bp)
Overview 1 RT 1: 178792-182563 bp Neighborhood of RT #1 [178792, 182563] RVT-DGRs Feature: gene Location: 178792-179082 bp Feature: gene Location: 179092-180450 bp Feature: gene Location: 180782-181969 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 181115-181742 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 81 1 1 5-1 81 742 bp Feature: gene Location: 181932-182360 bp Feature: gene Location: 182357-182563 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCH01000011.1 Bacteroides xylanisolvens strain BIOML-A8 scaffold11_size371002, whole genome shotgun sequence (371002 bp)
Overview 1 RT 1: 178481-190882 bp 2 RT 2: 353708-363607 bp Neighborhood of RT #1 [178481, 191007] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons PDDEXK_2 Neighborhood of RT #2 [353708, 363666] DUF4990 RVT-GII GIIM RVT-GII GIIM Pgu1 Pgu1 RGL11 Feature: gene Location: 178481-180280 bp Feature: domain Description: rpsA Location: 178550-180149 bp Feature: domain Description: rpsA Location: 178550-180149 bp Feature: gene Location: 180377-186418 bp Feature: domain Description: DUF4011 Location: 181607-182120 bp Feature: domain Description: DUF4011 Location: 181607-182 12 0 bp Feature: domain Description: DEXXQc_SF1 Location: 182459-182900 bp Feature: domain Description: DEXXQc_SF1 Location: 182 459-182 900 bp Feature: domain Description: DEXXQc_SF1 Location: 183896-184646 bp Feature: domain Description: DEXXQc_SF1 Location: 183896-184646 bp Feature: domain Description: TIGR00376 Location: 184775-185165 bp Feature: domain Description: TIGR00376 Location: 184775-185165 bp Feature: domain Description: MTES_1575 Location: 185318-185603 bp Feature: domain Description: MTES_1575 Location: 185318-185603 bp Feature: domain Description: DUF3320 Location: 185933-186068 bp Feature: domain Description: DUF332 0 Location: 185933-186068 bp Feature: gene Location: 186469-187599 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 186790-187333 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 186790-187333 bp Feature: gene Location: 187807-190014 bp Feature: gene Location: 190183-191007 bp Feature: domain Description: PDDEXK_2 Location: 190204-190882 bp Feature: domain Description: PDDEXK_2 Location: 1902 04-190882 bp Feature: gene Location: 353708-354142 bp Feature: gene Location: 354189-355733 bp Feature: domain Description: DUF4990 Location: 355305-355719 bp Feature: domain Description: DUF4990 Location: 355305-355719 bp Feature: gene Location: 356155-357447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 356365-357022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 356365-35702 2 bp Feature: domain Description: GIIM Note: maturase Location: 357100-357307 bp Feature: domain Description: GIIM Note: maturase Location: 357100-357307 bp Feature: gene Location: 358021-359427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 358363-358981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 358363-358981 bp Feature: domain Description: GIIM Note: maturase Location: 359038-359257 bp Feature: domain Description: GIIM Note: maturase Location: 359038-3592 57 bp Feature: gene Location: 360081-361571 bp Feature: domain Description: Pgu1 Location: 360246-360597 bp Feature: domain Description: Pgu1 Location: 3602 46-360597 bp Feature: domain Description: Pgu1 Location: 360690-361182 bp Feature: domain Description: Pgu1 Location: 360690-361182 bp Feature: gene Location: 361720-363666 bp Feature: domain Description: RGL11 Location: 361867-363607 bp Feature: domain Description: RGL11 Location: 361867-363607 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, PDDEXK_2 (pfam12784), DUF4990 (pfam16380), RVT-GII
GIIM (pfam08388), Pgu1 (COG5434), RGL11 (cl22850)

Seq: WDCH01000013.1 Bacteroides xylanisolvens strain BIOML-A8 scaffold13_size182383, whole genome shotgun sequence (182383 bp)
Overview 1 RT 1: 100454-110623 bp Neighborhood of RT #1 [100454, 110661] Laminin_G_3 pfam08757 LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 100454-107242 bp Feature: domain Description: Laminin_G_3 Location: 102890-103271 bp Feature: domain Description: Laminin_G_3 Location: 102890-103 271 bp Feature: domain Description: pfam08757 Location: 104066-104390 bp Feature: domain Description: pfam08757 Location: 104066-1043 90 bp Feature: domain Description: LRR_AMN1 Location: 105002-105446 bp Feature: domain Description: LRR_AMN1 Location: 105002-105446 bp Feature: gene Location: 107303-107470 bp Feature: gene Location: 107615-108970 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 107891-108482 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 107891-108482 bp Feature: gene Location: 108972-109466 bp Feature: gene Location: 109516-110661 bp Feature: domain Description: Arm-DNA-bind_5 Location: 109540-109786 bp Feature: domain Description: Arm-DNA-bind_5 Location: 109540-109786 bp Feature: domain Description: Phage_int_SAM_5 Location: 109825-110110 bp Feature: domain Description: Phage_int_SAM_5 Location: 109825-110110 bp Feature: domain Description: INTN1_C_like Location: 110149-110623 bp Feature: domain Description: INTN1_C_like Location: 110149-110623 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: WDCH01000017.1 Bacteroides xylanisolvens strain BIOML-A8 scaffold17_size125404, whole genome shotgun sequence (125404 bp)
Overview 1 RT 1: 28066-31293 bp Neighborhood of RT #1 [28066, 31293] LRR_AMN1 RVT_N RVT-GII GIIM Feature: gene Location: 28066-28737 bp Feature: domain Description: LRR_AMN1 Location: 28441-28714 bp Feature: domain Description: LRR_AMN1 Location: 284 4 1-28714 bp Feature: gene Location: 28752-28886 bp Feature: gene Location: 28980-30395 bp Feature: domain Description: RVT_N Location: 28992-29217 bp Feature: domain Description: RVT_N Location: 28992-29217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29262-29907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29262-29907 bp Feature: domain Description: GIIM Note: maturase Location: 29961-30195 bp Feature: domain Description: GIIM Note: maturase Location: 29961-30195 bp Feature: gene Location: 30395-30694 bp Feature: gene Location: 30991-31293 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LRR_AMN1 (sd00034), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WDCH01000018.1 Bacteroides xylanisolvens strain BIOML-A8 scaffold18_size123576, whole genome shotgun sequence (123576 bp)
Overview 1 RT 1: 90798-99819 bp Neighborhood of RT #1 [90798, 99819] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 90798-97517 bp Feature: domain Description: Laminin_G_3 Location: 92241-92319 bp Feature: domain Description: Laminin_G_3 Location: 92241-92319 bp Feature: domain Description: Laminin_G_3 Location: 92970-93396 bp Feature: domain Description: Laminin_G_3 Location: 92970-93396 bp Feature: gene Location: 97762-97917 bp Feature: gene Location: 98034-99032 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 98247-98841 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 98247-98841 bp Feature: gene Location: 99029-99337 bp Feature: gene Location: 99334-99819 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: WDCH01000001.1 Bacteroides xylanisolvens strain BIOML-A8 scaffold1_size383289, whole genome shotgun sequence (383289 bp)
Overview 1 RT 1: 97782-104667 bp 2 RT 2: 178181-179794 bp Neighborhood of RT #1 [97782, 104667] AAA_25 RVT-GII Intron_maturas2 Toprim_2 Neighborhood of RT #2 [178181, 179794] DDE_Tnp_IS66_C group_II_RT_mat RVT-GII Feature: gene Location: 97782-99329 bp Feature: domain Description: AAA_25 Location: 98397-98859 bp Feature: domain Description: AAA_25 Location: 98397-98859 bp Feature: gene Location: 99541-99723 bp Feature: gene Location: 100272-102080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100536-101358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100536 -101358 bp Feature: domain Description: Intron_maturas2 Location: 101427-101736 bp Feature: domain Description: Intron_maturas2 Location: 101427-101736 bp Feature: gene Location: 102052-102981 bp Feature: domain Description: Toprim_2 Location: 102604-102892 bp Feature: domain Description: Toprim_2 Location: 1026 04-102892 bp Feature: gene Location: 103264-104667 bp Feature: gene Location: 178181-178381 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 178193-178295 bp Feature: domain Description: DDE_Tnp_IS6 6 _C Location: 178193-178295 bp Feature: gene Location: 178477-178779 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 178525-178762 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 178525-17876 2 bp Feature: gene Location: 178836-179156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 178839-179076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 178839-179076 bp Feature: gene Location: 179168-179296 bp Feature: gene Location: 179561-179794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_25 (pfam13481), RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155), DDE_Tnp_IS66_C (pfam13817), group_II_RT_mat (TIGR04416)

Seq: WDCH01000021.1 Bacteroides xylanisolvens strain BIOML-A8 scaffold21_size112757, whole genome shotgun sequence (112670 bp)
Overview 1 RT 1: 24441-27499 bp Neighborhood of RT #1 [24441, 27576] DUF4134 RVT-GII Intron_maturas2 HNHc DUF4134 DUF4133 Feature: gene Location: 24441-24695 bp Feature: domain Description: DUF4134 Location: 24477-24678 bp Feature: domain Description: DUF4134 Location: 2447 7 -2467 8 bp Feature: gene Location: 24707-25057 bp Feature: gene Location: 25237-27048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25501-26323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25501-26323 bp Feature: domain Description: Intron_maturas2 Location: 26512-26722 bp Feature: domain Description: Intron_maturas2 Location: 26512-267 22 bp Feature: domain Description: HNHc Note: nucleases Location: 26872-26977 bp Feature: domain Description: HNHc Note: nucleases Location: 2687 2-2697 7 bp Feature: gene Location: 27073-27267 bp Feature: domain Description: DUF4134 Location: 27163-27253 bp Feature: domain Description: DUF4134 Location: 27 163-27 253 bp Feature: gene Location: 27280-27576 bp Feature: domain Description: DUF4133 Location: 27322-27499 bp Feature: domain Description: DUF4133 Location: 27 322-27 499 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571)

Seq: WDCH01000032.1 Bacteroides xylanisolvens strain BIOML-A8 scaffold32_size64611, whole genome shotgun sequence (64611 bp)
Overview 1 RT 1: 4984-7804 bp Neighborhood of RT #1 [4984, 7804] RVT-DGRs Feature: gene Location: 4984-5226 bp Feature: gene Location: 5412-5861 bp Feature: gene Location: 5894-7195 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6107-6704 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6107-6704 bp Feature: gene Location: 7292-7549 bp Feature: gene Location: 7571-7804 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCH01000039.1 Bacteroides xylanisolvens strain BIOML-A8 scaffold39_size42633, whole genome shotgun sequence (42537 bp)
Overview 1 RT 1: 12233-15349 bp Neighborhood of RT #1 [12233, 15349] RVT-UG27 Feature: gene Location: 12233-12394 bp Feature: gene Location: 12433-12690 bp Feature: gene Location: 12740-14005 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 12929-13565 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 129 29 -13565 bp Feature: gene Location: 14023-14649 bp Feature: gene Location: 14693-15349 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WDCH01000059.1 Bacteroides xylanisolvens strain BIOML-A8 scaffold59_size42597, whole genome shotgun sequence (42513 bp)
Overview 1 RT 1: 4021-9235 bp Neighborhood of RT #1 [4021, 9246] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 4021-4266 bp Feature: domain Description: Bac_Flav_CT_G Location: 4024-4249 bp Feature: domain Description: Bac_Flav_CT_G Location: 4024-4249 bp Feature: gene Location: 4469-4624 bp Feature: gene Location: 4822-6549 bp Feature: domain Description: RVT_N Location: 4927-5170 bp Feature: domain Description: RVT_N Location: 4927-5170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5215-5863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5215-5863 bp Feature: domain Description: GIIM Note: maturase Location: 5914-6148 bp Feature: domain Description: GIIM Note: maturase Location: 5914-6148 bp Feature: gene Location: 6530-8917 bp Feature: domain Description: Bac_Flav_CT_G Location: 6650-8909 bp Feature: domain Description: Bac_Flav_CT_G Location: 6650-8909 bp Feature: gene Location: 8932-9246 bp Feature: domain Description: DUF3876 Location: 8986-9235 bp Feature: domain Description: DUF3876 Location: 8986-9235 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3876 (pfam12992)

Seq: WDCH01000005.1 Bacteroides xylanisolvens strain BIOML-A8 scaffold5_size260561, whole genome shotgun sequence (260561 bp)
Overview 1 RT 1: 156741-162784 bp Neighborhood of RT #1 [156741, 163437] NGN_SP_UpxY KOW_NusG Phage_int_SAM_5 INTN1_C_like RVT-Retrons REC Feature: gene Location: 156741-157319 bp Feature: domain Description: NGN_SP_UpxY Location: 156819-157101 bp Feature: domain Description: NGN_SP_UpxY Location: 156819-157101 bp Feature: domain Description: KOW_NusG Location: 157152-157263 bp Feature: domain Description: KOW_NusG Location: 157152-157263 bp Feature: gene Location: 157655-158620 bp Feature: domain Description: Phage_int_SAM_5 Location: 157688-157931 bp Feature: domain Description: Phage_int_SAM_5 Location: 157688-157931 bp Feature: domain Description: INTN1_C_like Location: 158012-158534 bp Feature: domain Description: INTN1_C_like Location: 158012-158534 bp Feature: gene Location: 158896-161115 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 159097-159682 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 159097-159682 bp Feature: gene Location: 161093-161737 bp Feature: gene Location: 161734-163437 bp Feature: domain Description: REC Location: 162553-162784 bp Feature: domain Description: REC Location: 162553-162784 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NGN_SP_UpxY (cd09895), KOW_NusG (cd06091), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-Retrons, REC (smart00448)