myRT

myRT report for GCA_009102785.1_ASM910278v1

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Seq: WDCF01000109.1 Bacteroides xylanisolvens strain BIOML-A6 scaffold109_size18322, whole genome shotgun sequence (18322 bp)
Overview 1 RT 1: 11450-12993 bp Neighborhood of RT #1 [11450, 12993] RVT-GII HTH_28 Feature: gene Location: 11450-11812 bp Feature: gene Location: 11816-12025 bp Feature: gene Location: 12055-12252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12058-12250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2058-1 2250 bp Feature: gene Location: 12373-12663 bp Feature: domain Description: HTH_28 Location: 12397-12541 bp Feature: domain Description: HTH_28 Location: 1 2397-1 2541 bp Feature: gene Location: 12841-12993 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_28 (pfam13518)

Seq: WDCF01000116.1 Bacteroides xylanisolvens strain BIOML-A6 scaffold116_size16523, whole genome shotgun sequence (16523 bp)
Overview 1 RT 1: 3-2569 bp Neighborhood of RT #1 [3, 2569] RVT-DGRs Feature: gene Location: 3-245 bp Feature: gene Location: 362-1759 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 575-1169 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 575-1169 bp Feature: gene Location: 1662-2147 bp Feature: gene Location: 2327-2569 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCF01000138.1 Bacteroides xylanisolvens strain BIOML-A6 scaffold138_size14633, whole genome shotgun sequence (14633 bp)
Overview 1 RT 1: 11611-14624 bp Neighborhood of RT #1 [11611, 14632] DUF4134 RVT_N RVT-GII GIIM DUF4134 DUF4133 Feature: gene Location: 11611-11838 bp Feature: domain Description: DUF4134 Location: 11632-11815 bp Feature: domain Description: DUF413 4 Location: 1163 2-11815 bp Feature: gene Location: 11909-12160 bp Feature: gene Location: 12440-14089 bp Feature: RT Description: RVT_N Location: 12497-12740 bp Feature: RT Description: RVT_N Location: 12497-12740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12785-13433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12785-13 43 3 bp Feature: domain Description: GIIM Note: maturase Location: 13490-13721 bp Feature: domain Description: GIIM Note: maturase Location: 13 490-13 721 bp Feature: gene Location: 14094-14336 bp Feature: domain Description: DUF4134 Location: 14241-14331 bp Feature: domain Description: DUF413 4 Location: 14241-143 3 1 bp Feature: gene Location: 14339-14632 bp Feature: domain Description: DUF4133 Location: 14357-14624 bp Feature: domain Description: DUF413 3 Location: 143 57-14624 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571)

Seq: WDCF01000175.1 Bacteroides xylanisolvens strain BIOML-A6 scaffold175_size8956, whole genome shotgun sequence (8956 bp)
Overview 1 RT 1: 2970-8905 bp Neighborhood of RT #1 [2970, 8955] N6_Mtase N6_Mtase COG4646 matK RVT-GII Intron_maturas2 COG4646 Feature: gene Location: 2970-4028 bp Feature: domain Description: N6_Mtase Location: 3282-3390 bp Feature: domain Description: N6_Mtase Location: 3282-3390 bp Feature: domain Description: N6_Mtase Location: 3528-3882 bp Feature: domain Description: N6_Mtase Location: 3528-3882 bp Feature: gene Location: 4074-6161 bp Feature: domain Description: COG4646 Location: 5214-6150 bp Feature: domain Description: COG4 64 6 Location: 5214 -6150 bp Feature: gene Location: 6714-8516 bp Feature: domain Description: matK Location: 6783-6870 bp Feature: domain Description: matK Location: 6783-6870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6978-7800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6978-7800 bp Feature: domain Description: Intron_maturas2 Location: 7950-8184 bp Feature: domain Description: Intron_maturas2 Location: 7950-8184 bp Feature: gene Location: 8503-8955 bp Feature: domain Description: COG4646 Location: 8617-8905 bp Feature: domain Description: COG4 64 6 Location: 8617-8905 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), matK (CHL00002), RVT-GII, Intron_maturas2 (pfam01348)

Seq: WDCF01000039.1 Bacteroides xylanisolvens strain BIOML-A6 scaffold39_size40273, whole genome shotgun sequence (40273 bp)
Overview 1 RT 1: 2766-8518 bp 2 RT 2: 26496-38897 bp Neighborhood of RT #1 [2766, 8532] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Bac_Flav_CT_G Bac_Flav_CT_G Neighborhood of RT #2 [26496, 39022] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons PDDEXK_2 Feature: gene Location: 2766-3398 bp Feature: domain Description: DUF4141 Location: 2790-2937 bp Feature: domain Description: DUF4141 Location: 2790-2937 bp Feature: gene Location: 3419-3877 bp Feature: domain Description: Bac_Flav_CT_G Location: 3437-3863 bp Feature: domain Description: Bac_Flav_CT_G Location: 3437-3863 bp Feature: gene Location: 3955-5766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4219-5041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4219-5 041 bp Feature: domain Description: Intron_maturas2 Location: 5116-5431 bp Feature: domain Description: Intron_maturas2 Location: 5 116-5 431 bp Feature: domain Description: HNHc Note: nucleases Location: 5587-5737 bp Feature: domain Description: HNHc Note: nucleases Location: 5 5 87-5 737 bp Feature: gene Location: 6112-6285 bp Feature: gene Location: 6313-8532 bp Feature: domain Description: Bac_Flav_CT_G Location: 6466-6859 bp Feature: domain Description: Bac_Flav_CT_G Location: 6466-685 9 bp Feature: domain Description: Bac_Flav_CT_G Location: 6868-7927 bp Feature: domain Description: Bac_Flav_CT_G Location: 6868-7927 bp Feature: domain Description: Bac_Flav_CT_G Location: 8083-8518 bp Feature: domain Description: Bac_Flav_CT_G Location: 8083-85 18 bp Feature: gene Location: 26496-28295 bp Feature: domain Description: rpsA Location: 26565-28164 bp Feature: domain Description: rpsA Location: 265 65 -28164 bp Feature: gene Location: 28392-34433 bp Feature: domain Description: DUF4011 Location: 29622-30135 bp Feature: domain Description: DUF4011 Location: 29622-30135 bp Feature: domain Description: DEXXQc_SF1 Location: 30474-30915 bp Feature: domain Description: DEXXQc_SF1 Location: 30474-30915 bp Feature: domain Description: DEXXQc_SF1 Location: 31911-32661 bp Feature: domain Description: DEXXQc_SF1 Location: 31911-32661 bp Feature: domain Description: TIGR00376 Location: 32790-33180 bp Feature: domain Description: TIGR00376 Location: 32790-33180 bp Feature: domain Description: MTES_1575 Location: 33333-33618 bp Feature: domain Description: MTES_15 75 Location: 33333-33618 bp Feature: domain Description: DUF3320 Location: 33948-34083 bp Feature: domain Description: DUF3320 Location: 33948-34083 bp Feature: gene Location: 34484-35614 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34805-35348 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34805 -35 348 bp Feature: gene Location: 35822-38011 bp Feature: gene Location: 38198-39022 bp Feature: domain Description: PDDEXK_2 Location: 38219-38897 bp Feature: domain Description: PDDEXK_2 Location: 38219-38897 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741)
DUF3320 (pfam11784), RVT-Retrons, PDDEXK_2 (pfam12784)

Seq: WDCF01000003.1 Bacteroides xylanisolvens strain BIOML-A6 scaffold3_size103245, whole genome shotgun sequence (103245 bp)
Overview 1 RT 1: 84750-91778 bp Neighborhood of RT #1 [84750, 91867] RVT-Retrons UvrD UvrD UvrD Feature: gene Location: 84750-85292 bp Feature: gene Location: 85748-86665 bp Feature: gene Location: 86667-88127 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 86868-87501 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 86 86 8-87501 bp Feature: gene Location: 88460-90229 bp Feature: gene Location: 90239-91867 bp Feature: domain Description: UvrD Location: 90266-90386 bp Feature: domain Description: UvrD Location: 9026 6 -90386 bp Feature: domain Description: UvrD Location: 91058-91553 bp Feature: domain Description: UvrD Location: 91058-91553 bp Feature: domain Description: UvrD Location: 91625-91778 bp Feature: domain Description: UvrD Location: 916 25-91778 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, UvrD (COG0210)

Seq: WDCF01000040.1 Bacteroides xylanisolvens strain BIOML-A6 scaffold40_size86761, whole genome shotgun sequence (86761 bp)
Overview 1 RT 1: 8986-18487 bp Neighborhood of RT #1 [8986, 18487] RVT-DGRs Feature: gene Location: 8986-9228 bp Feature: gene Location: 9414-9899 bp Feature: gene Location: 9896-11197 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 10109-10703 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 10109-107 03 bp Feature: gene Location: 11573-11806 bp Feature: gene Location: 11936-18487 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCF01000052.1 Bacteroides xylanisolvens strain BIOML-A6 scaffold52_size58951, whole genome shotgun sequence (58951 bp)
Overview 1 RT 1: 49525-54112 bp Neighborhood of RT #1 [49525, 54144] MPTase-PolyVal RVT-GII Intron_maturas2 DUF1738 Feature: gene Location: 49525-49899 bp Feature: gene Location: 49952-51271 bp Feature: domain Description: MPTase-PolyVal Location: 50222-50531 bp Feature: domain Description: MPTase-PolyVal Location: 50222-50531 bp Feature: gene Location: 51273-53084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51537-52359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51537-52359 bp Feature: domain Description: Intron_maturas2 Location: 52497-52734 bp Feature: domain Description: Intron_maturas2 Location: 52497-52734 bp Feature: gene Location: 53343-53477 bp Feature: gene Location: 53653-54144 bp Feature: domain Description: DUF1738 Location: 53695-54112 bp Feature: domain Description: DUF1738 Location: 53695-54112 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MPTase-PolyVal (pfam18818), RVT-GII, Intron_maturas2 (pfam01348), DUF1738 (pfam08401)