myRT

myRT report for GCA_009102805.1_ASM910280v1

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Seq: WDCE01000013.1 Bacteroides xylanisolvens strain BIOML-A5 scaffold13_size156923, whole genome shotgun sequence (156945 bp)
Overview 1 RT 1: 78541-85569 bp Neighborhood of RT #1 [78541, 85658] RVT-Retrons UvrD UvrD UvrD Feature: gene Location: 78541-79083 bp Feature: gene Location: 79539-80456 bp Feature: gene Location: 80458-81918 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 80659-81292 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 80659-81 292 bp Feature: gene Location: 82251-84020 bp Feature: gene Location: 84030-85658 bp Feature: domain Description: UvrD Location: 84057-84177 bp Feature: domain Description: UvrD Location: 84057-841 77 bp Feature: domain Description: UvrD Location: 84849-85344 bp Feature: domain Description: UvrD Location: 84849-85344 bp Feature: domain Description: UvrD Location: 85416-85569 bp Feature: domain Description: UvrD Location: 8541 6-85569 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, UvrD (COG0210)

Seq: WDCE01000015.1 Bacteroides xylanisolvens strain BIOML-A5 scaffold15_size134749, whole genome shotgun sequence (134749 bp)
Overview 1 RT 1: 39710-44341 bp Neighborhood of RT #1 [39710, 44341] DUF1738 RVT-GII Intron_maturas2 MPTase-PolyVal Feature: gene Location: 39710-40213 bp Feature: domain Description: DUF1738 Location: 39764-40181 bp Feature: domain Description: DUF1738 Location: 39764-40181 bp Feature: gene Location: 40389-40523 bp Feature: gene Location: 40782-42593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41046-41868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41046-41868 bp Feature: domain Description: Intron_maturas2 Location: 42006-42243 bp Feature: domain Description: Intron_maturas2 Location: 42 006-42 2 43 bp Feature: gene Location: 42595-43914 bp Feature: domain Description: MPTase-PolyVal Location: 42865-43174 bp Feature: domain Description: MPTase-PolyVal Location: 42 865-43174 bp Feature: gene Location: 43967-44341 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1738 (pfam08401), RVT-GII, Intron_maturas2 (pfam01348), MPTase-PolyVal (pfam18818)

Seq: WDCE01000021.1 Bacteroides xylanisolvens strain BIOML-A5 scaffold21_size93554, whole genome shotgun sequence (93554 bp)
Overview 1 RT 1: 57-3115 bp Neighborhood of RT #1 [57, 3576] RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4141 Feature: gene Location: 57-230 bp Feature: gene Location: 576-2387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 840-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 840-1662 bp Feature: domain Description: Intron_maturas2 Location: 1737-2052 bp Feature: domain Description: Intron_maturas2 Location: 173 7-2052 bp Feature: domain Description: HNHc Note: nucleases Location: 2208-2358 bp Feature: domain Description: HNHc Note: nucleases Location: 2208-23 58 bp Feature: gene Location: 2465-2923 bp Feature: domain Description: Bac_Flav_CT_G Location: 2483-2909 bp Feature: domain Description: Bac_Flav_CT_G Location: 2483 -2909 bp Feature: gene Location: 2944-3576 bp Feature: domain Description: DUF4141 Location: 2968-3115 bp Feature: domain Description: DUF4141 Location: 2968-3 115 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), DUF4141 (pfam13605), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDCE01000022.1 Bacteroides xylanisolvens strain BIOML-A5 scaffold22_size89238, whole genome shotgun sequence (89238 bp)
Overview 1 RT 1: 71054-72597 bp Neighborhood of RT #1 [71054, 72597] HTH_28 RVT-GII Feature: gene Location: 71054-71206 bp Feature: gene Location: 71384-71674 bp Feature: domain Description: HTH_28 Location: 71408-71552 bp Feature: domain Description: HTH_28 Location: 714 08-71552 bp Feature: gene Location: 71795-71992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71798-71990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71798-71990 bp Feature: gene Location: 72022-72231 bp Feature: gene Location: 72235-72597 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_28 (pfam13518), RVT-GII

Seq: WDCE01000030.1 Bacteroides xylanisolvens strain BIOML-A5 scaffold30_size69865, whole genome shotgun sequence (69865 bp)
Overview 1 RT 1: 13457-26961 bp Neighborhood of RT #1 [13457, 26961] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 13457-13699 bp Feature: gene Location: 13879-14364 bp Feature: gene Location: 14267-15664 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 14480-15074 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 14480-15 074 bp Feature: gene Location: 16181-22918 bp Feature: domain Description: Laminin_G_3 Location: 17642-17720 bp Feature: domain Description: Laminin_G_3 Location: 17642-17720 bp Feature: domain Description: Laminin_G_3 Location: 18371-18797 bp Feature: domain Description: Laminin_G_3 Location: 18371-18797 bp Feature: gene Location: 22945-26961 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: WDCE01000051.1 Bacteroides xylanisolvens strain BIOML-A5 scaffold51_size33792, whole genome shotgun sequence (33792 bp)
Overview 1 RT 1: 20232-32633 bp Neighborhood of RT #1 [20232, 32758] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons PDDEXK_2 Feature: gene Location: 20232-22031 bp Feature: domain Description: rpsA Location: 20301-21900 bp Feature: domain Description: rpsA Location: 20301-21900 bp Feature: gene Location: 22128-28169 bp Feature: domain Description: DUF4011 Location: 23358-23871 bp Feature: domain Description: DUF4011 Location: 23358-23871 bp Feature: domain Description: DEXXQc_SF1 Location: 24210-24651 bp Feature: domain Description: DEXXQc_SF1 Location: 24210-246 51 bp Feature: domain Description: DEXXQc_SF1 Location: 25647-26397 bp Feature: domain Description: DEXXQc_SF1 Location: 256 47-26 397 bp Feature: domain Description: TIGR00376 Location: 26526-26916 bp Feature: domain Description: TIGR00376 Location: 26 526 -26 916 bp Feature: domain Description: MTES_1575 Location: 27069-27354 bp Feature: domain Description: MTES_1575 Location: 2706 9-27354 bp Feature: domain Description: DUF3320 Location: 27684-27819 bp Feature: domain Description: DUF3320 Location: 276 84-27819 bp Feature: gene Location: 28220-29350 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 28541-29084 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 28541-29084 bp Feature: gene Location: 29558-31747 bp Feature: gene Location: 31934-32758 bp Feature: domain Description: PDDEXK_2 Location: 31955-32633 bp Feature: domain Description: PDDEXK_2 Location: 31955-326 33 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, PDDEXK_2 (pfam12784)

Seq: WDCE01000063.1 Bacteroides xylanisolvens strain BIOML-A5 scaffold63_size24857, whole genome shotgun sequence (24857 bp)
Overview 1 RT 1: 8986-18487 bp Neighborhood of RT #1 [8986, 18487] RVT-DGRs Feature: gene Location: 8986-9228 bp Feature: gene Location: 9414-9899 bp Feature: gene Location: 9896-11197 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 10109-10703 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 10109-107 03 bp Feature: gene Location: 11573-11806 bp Feature: gene Location: 11936-18487 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCE01000006.1 Bacteroides xylanisolvens strain BIOML-A5 scaffold6_size378836, whole genome shotgun sequence (378921 bp)
Overview 1 RT 1: 149313-158533 bp Neighborhood of RT #1 [149313, 158533] DUF1896 N6_Mtase N6_Mtase COG4646 matK RVT-GII Intron_maturas2 COG4646 Helicase_C Feature: gene Location: 149313-149900 bp Feature: domain Description: DUF1896 Location: 149478-149898 bp Feature: domain Description: DUF18 96 Location: 149478 -1498 98 bp Feature: gene Location: 149890-153081 bp Feature: domain Description: N6_Mtase Location: 150202-150310 bp Feature: domain Description: N6_Mtase Location: 150202-150310 bp Feature: domain Description: N6_Mtase Location: 150448-150805 bp Feature: domain Description: N6_Mtase Location: 150448 -1508 05 bp Feature: domain Description: COG4646 Location: 152134-153070 bp Feature: domain Description: COG4646 Location: 152134-153070 bp Feature: gene Location: 153634-155436 bp Feature: domain Description: matK Location: 153703-153790 bp Feature: domain Description: matK Location: 153703-153790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153898-154720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1538 98 -154720 bp Feature: domain Description: Intron_maturas2 Location: 154870-155104 bp Feature: domain Description: Intron_maturas2 Location: 1548 70-155104 bp Feature: gene Location: 155423-158188 bp Feature: domain Description: COG4646 Location: 155537-156677 bp Feature: domain Description: COG4646 Location: 155537-156677 bp Feature: domain Description: Helicase_C Location: 156890-157088 bp Feature: domain Description: Helicase_C Location: 1568 90-15708 8 bp Feature: gene Location: 158393-158533 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1896 (pfam08989), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), matK (CHL00002), RVT-GII, Intron_maturas2 (pfam01348), Helicase_C (pfam00271)

Seq: WDCE01000079.1 Bacteroides xylanisolvens strain BIOML-A5 scaffold79_size2435, whole genome shotgun sequence (2435 bp)
Overview 1 RT 1: 1-2219 bp Neighborhood of RT #1 [1, 2219] RVT_N RVT-GII GIIM Feature: gene Location: 1-141 bp Feature: gene Location: 146-1795 bp Feature: RT Description: RVT_N Location: 203-446 bp Feature: RT Description: RVT_N Location: 203-446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 491-1139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49 1-1139 bp Feature: domain Description: GIIM Note: maturase Location: 1196-1427 bp Feature: domain Description: GIIM Note: maturase Location: 119 6-1427 bp Feature: gene Location: 1899-2051 bp Feature: gene Location: 2064-2219 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)