myRT

myRT report for GCA_009102825.1_ASM910282v1

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Seq: WDCD01000010.1 Bacteroides xylanisolvens strain BIOML-A4 scaffold10_size157167, whole genome shotgun sequence (157167 bp)
Overview 1 RT 1: 78541-85569 bp Neighborhood of RT #1 [78541, 85658] RVT-Retrons UvrD UvrD UvrD Feature: gene Location: 78541-79083 bp Feature: gene Location: 79539-80456 bp Feature: gene Location: 80458-81918 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 80659-81292 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 80659-81 292 bp Feature: gene Location: 82251-84020 bp Feature: gene Location: 84030-85658 bp Feature: domain Description: UvrD Location: 84057-84177 bp Feature: domain Description: UvrD Location: 84057-841 77 bp Feature: domain Description: UvrD Location: 84849-85344 bp Feature: domain Description: UvrD Location: 84849-85344 bp Feature: domain Description: UvrD Location: 85416-85569 bp Feature: domain Description: UvrD Location: 8541 6-85569 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, UvrD (COG0210)

Seq: WDCD01000013.1 Bacteroides xylanisolvens strain BIOML-A4 scaffold13_size134749, whole genome shotgun sequence (134749 bp)
Overview 1 RT 1: 39710-44341 bp Neighborhood of RT #1 [39710, 44341] DUF1738 RVT-GII Intron_maturas2 MPTase-PolyVal Feature: gene Location: 39710-40213 bp Feature: domain Description: DUF1738 Location: 39764-40181 bp Feature: domain Description: DUF1738 Location: 39764-40181 bp Feature: gene Location: 40389-40523 bp Feature: gene Location: 40782-42593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41046-41868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41046-41868 bp Feature: domain Description: Intron_maturas2 Location: 42006-42243 bp Feature: domain Description: Intron_maturas2 Location: 42 006-42 2 43 bp Feature: gene Location: 42595-43914 bp Feature: domain Description: MPTase-PolyVal Location: 42865-43174 bp Feature: domain Description: MPTase-PolyVal Location: 42 865-43174 bp Feature: gene Location: 43967-44341 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1738 (pfam08401), RVT-GII, Intron_maturas2 (pfam01348), MPTase-PolyVal (pfam18818)

Seq: WDCD01000025.1 Bacteroides xylanisolvens strain BIOML-A4 scaffold25_size93637, whole genome shotgun sequence (93552 bp)
Overview 1 RT 1: 57-3115 bp Neighborhood of RT #1 [57, 3576] RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4141 Feature: gene Location: 57-230 bp Feature: gene Location: 576-2387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 840-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 840-1662 bp Feature: domain Description: Intron_maturas2 Location: 1737-2052 bp Feature: domain Description: Intron_maturas2 Location: 173 7-2052 bp Feature: domain Description: HNHc Note: nucleases Location: 2208-2358 bp Feature: domain Description: HNHc Note: nucleases Location: 2208-23 58 bp Feature: gene Location: 2465-2923 bp Feature: domain Description: Bac_Flav_CT_G Location: 2483-2909 bp Feature: domain Description: Bac_Flav_CT_G Location: 2483 -2909 bp Feature: gene Location: 2944-3576 bp Feature: domain Description: DUF4141 Location: 2968-3115 bp Feature: domain Description: DUF4141 Location: 2968-3 115 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), DUF4141 (pfam13605), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDCD01000026.1 Bacteroides xylanisolvens strain BIOML-A4 scaffold26_size89238, whole genome shotgun sequence (89238 bp)
Overview 1 RT 1: 71054-72597 bp Neighborhood of RT #1 [71054, 72597] HTH_28 RVT-GII Feature: gene Location: 71054-71206 bp Feature: gene Location: 71384-71674 bp Feature: domain Description: HTH_28 Location: 71408-71552 bp Feature: domain Description: HTH_28 Location: 714 08-71552 bp Feature: gene Location: 71795-71992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71798-71990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71798-71990 bp Feature: gene Location: 72022-72231 bp Feature: gene Location: 72235-72597 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_28 (pfam13518), RVT-GII

Seq: WDCD01000032.1 Bacteroides xylanisolvens strain BIOML-A4 scaffold32_size69863, whole genome shotgun sequence (69863 bp)
Overview 1 RT 1: 13457-26961 bp Neighborhood of RT #1 [13457, 26961] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 13457-13699 bp Feature: gene Location: 13879-14364 bp Feature: gene Location: 14267-15664 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 14480-15074 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 14480-15 074 bp Feature: gene Location: 16181-22918 bp Feature: domain Description: Laminin_G_3 Location: 17642-17720 bp Feature: domain Description: Laminin_G_3 Location: 17642-17720 bp Feature: domain Description: Laminin_G_3 Location: 18371-18797 bp Feature: domain Description: Laminin_G_3 Location: 18371-18797 bp Feature: gene Location: 22945-26961 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: WDCD01000050.1 Bacteroides xylanisolvens strain BIOML-A4 scaffold50_size33792, whole genome shotgun sequence (33792 bp)
Overview 1 RT 1: 20232-32633 bp Neighborhood of RT #1 [20232, 32758] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons PDDEXK_2 Feature: gene Location: 20232-22031 bp Feature: domain Description: rpsA Location: 20301-21900 bp Feature: domain Description: rpsA Location: 20301-21900 bp Feature: gene Location: 22128-28169 bp Feature: domain Description: DUF4011 Location: 23358-23871 bp Feature: domain Description: DUF4011 Location: 23358-23871 bp Feature: domain Description: DEXXQc_SF1 Location: 24210-24651 bp Feature: domain Description: DEXXQc_SF1 Location: 24210-246 51 bp Feature: domain Description: DEXXQc_SF1 Location: 25647-26397 bp Feature: domain Description: DEXXQc_SF1 Location: 256 47-26 397 bp Feature: domain Description: TIGR00376 Location: 26526-26916 bp Feature: domain Description: TIGR00376 Location: 26 526 -26 916 bp Feature: domain Description: MTES_1575 Location: 27069-27354 bp Feature: domain Description: MTES_1575 Location: 2706 9-27354 bp Feature: domain Description: DUF3320 Location: 27684-27819 bp Feature: domain Description: DUF3320 Location: 276 84-27819 bp Feature: gene Location: 28220-29350 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 28541-29084 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 28541-29084 bp Feature: gene Location: 29558-31747 bp Feature: gene Location: 31934-32758 bp Feature: domain Description: PDDEXK_2 Location: 31955-32633 bp Feature: domain Description: PDDEXK_2 Location: 31955-326 33 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, PDDEXK_2 (pfam12784)

Seq: WDCD01000005.1 Bacteroides xylanisolvens strain BIOML-A4 scaffold5_size380017, whole genome shotgun sequence (379948 bp)
Overview 1 RT 1: 150674-159894 bp Neighborhood of RT #1 [150674, 159894] DUF1896 N6_Mtase N6_Mtase COG4646 matK RVT-GII Intron_maturas2 COG4646 Helicase_C Feature: gene Location: 150674-151261 bp Feature: domain Description: DUF1896 Location: 150839-151259 bp Feature: domain Description: DUF1896 Location: 150839-151259 bp Feature: gene Location: 151251-154442 bp Feature: domain Description: N6_Mtase Location: 151563-151671 bp Feature: domain Description: N6_Mtase Location: 151563-15167 1 bp Feature: domain Description: N6_Mtase Location: 151809-152166 bp Feature: domain Description: N6_Mtase Location: 151809-152166 bp Feature: domain Description: COG4646 Location: 153495-154431 bp Feature: domain Description: COG4646 Location: 153495-154431 bp Feature: gene Location: 154995-156797 bp Feature: domain Description: matK Location: 155064-155151 bp Feature: domain Description: matK Location: 155064-155151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 155259-156081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 155259-156081 bp Feature: domain Description: Intron_maturas2 Location: 156231-156465 bp Feature: domain Description: Intron_maturas2 Location: 156231-156465 bp Feature: gene Location: 156784-159549 bp Feature: domain Description: COG4646 Location: 156898-158038 bp Feature: domain Description: COG4646 Location: 156898-158038 bp Feature: domain Description: Helicase_C Location: 158251-158449 bp Feature: domain Description: Helicase_C Location: 158251-158449 bp Feature: gene Location: 159754-159894 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1896 (pfam08989), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), matK (CHL00002), RVT-GII, Intron_maturas2 (pfam01348), Helicase_C (pfam00271)

Seq: WDCD01000066.1 Bacteroides xylanisolvens strain BIOML-A4 scaffold66_size20501, whole genome shotgun sequence (19955 bp)
Overview 1 RT 1: 8986-18487 bp Neighborhood of RT #1 [8986, 18487] RVT-DGRs Feature: gene Location: 8986-9228 bp Feature: gene Location: 9414-9899 bp Feature: gene Location: 9896-11197 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 10109-10703 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 10109-10703 bp Feature: gene Location: 11573-11806 bp Feature: gene Location: 11936-18487 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCD01000081.1 Bacteroides xylanisolvens strain BIOML-A4 scaffold81_size5100, whole genome shotgun sequence (5006 bp)
Overview 1 RT 1: 2108-4897 bp Neighborhood of RT #1 [2108, 4897] DUF4133 DUF4134 RVT_N RVT-GII GIIM Feature: gene Location: 2108-2458 bp Feature: domain Description: DUF4133 Location: 2123-2393 bp Feature: domain Description: DUF4133 Location: 2123-239 3 bp Feature: gene Location: 2470-2712 bp Feature: domain Description: DUF4134 Location: 2617-2707 bp Feature: domain Description: DUF4134 Location: 2617-2707 bp Feature: gene Location: 2717-4366 bp Feature: RT Description: RVT_N Location: 2774-3017 bp Feature: RT Description: RVT_N Location: 2774-3017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3062-3710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3062-3710 bp Feature: domain Description: GIIM Note: maturase Location: 3767-3998 bp Feature: domain Description: GIIM Note: maturase Location: 3767-39 9 8 bp Feature: gene Location: 4470-4622 bp Feature: gene Location: 4646-4897 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)