myRT

myRT report for GCA_009102845.1_ASM910284v1

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Seq: WDCC01000108.1 Bacteroides xylanisolvens strain BIOML-A3 scaffold108_size2496, whole genome shotgun sequence (2496 bp)
Overview 1 RT 1: 110-2440 bp Neighborhood of RT #1 [110, 2440] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 110-1921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374-1196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374-1 1 96 bp Feature: domain Description: Intron_maturas2 Location: 1271-1586 bp Feature: domain Description: Intron_maturas2 Location: 1 271 -1 586 bp Feature: domain Description: HNHc Note: nucleases Location: 1742-1892 bp Feature: domain Description: HNHc Note: nucleases Location: 1 742-1 892 bp Feature: gene Location: 2267-2440 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDCC01000110.1 Bacteroides xylanisolvens strain BIOML-A3 scaffold110_size2435, whole genome shotgun sequence (2435 bp)
Overview 1 RT 1: 1-2219 bp Neighborhood of RT #1 [1, 2219] RVT_N RVT-GII GIIM Feature: gene Location: 1-141 bp Feature: gene Location: 146-1795 bp Feature: RT Description: RVT_N Location: 203-446 bp Feature: RT Description: RVT_N Location: 2 03-446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 491-1139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 491-1139 bp Feature: domain Description: GIIM Note: maturase Location: 1196-1427 bp Feature: domain Description: GIIM Note: maturase Location: 1196-142 7 bp Feature: gene Location: 1899-2051 bp Feature: gene Location: 2064-2219 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WDCC01000114.1 Bacteroides xylanisolvens strain BIOML-A3 scaffold114_size1795, whole genome shotgun sequence (1795 bp)
Overview 1 RT 1: 131-938 bp Neighborhood of RT #1 [131, 1432] RVT-DGRs Feature: gene Location: 131-1432 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 344-938 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 44-93 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDCC01000011.1 Bacteroides xylanisolvens strain BIOML-A3 scaffold11_size156474, whole genome shotgun sequence (156474 bp)
Overview 1 RT 1: 78541-85569 bp Neighborhood of RT #1 [78541, 85658] RVT-Retrons UvrD UvrD UvrD Feature: gene Location: 78541-79083 bp Feature: gene Location: 79539-80456 bp Feature: gene Location: 80458-81918 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 80659-81292 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 80659-81292 bp Feature: gene Location: 82251-84020 bp Feature: gene Location: 84030-85658 bp Feature: domain Description: UvrD Location: 84057-84177 bp Feature: domain Description: UvrD Location: 84 057-84 177 bp Feature: domain Description: UvrD Location: 84849-85344 bp Feature: domain Description: UvrD Location: 84 84 9-8534 4 bp Feature: domain Description: UvrD Location: 85416-85569 bp Feature: domain Description: UvrD Location: 854 16-85569 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, UvrD (COG0210)

Seq: WDCC01000015.1 Bacteroides xylanisolvens strain BIOML-A3 scaffold15_size134948, whole genome shotgun sequence (134948 bp)
Overview 1 RT 1: 39710-44341 bp Neighborhood of RT #1 [39710, 44341] DUF1738 RVT-GII Intron_maturas2 MPTase-PolyVal Feature: gene Location: 39710-40213 bp Feature: domain Description: DUF1738 Location: 39764-40181 bp Feature: domain Description: DUF1738 Location: 39764-40181 bp Feature: gene Location: 40389-40523 bp Feature: gene Location: 40782-42593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41046-41868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41046-41868 bp Feature: domain Description: Intron_maturas2 Location: 42006-42243 bp Feature: domain Description: Intron_maturas2 Location: 42006-42243 bp Feature: gene Location: 42595-43914 bp Feature: domain Description: MPTase-PolyVal Location: 42865-43174 bp Feature: domain Description: MPTase-PolyVal Location: 42865 -43174 bp Feature: gene Location: 43967-44341 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1738 (pfam08401), RVT-GII, Intron_maturas2 (pfam01348), MPTase-PolyVal (pfam18818)

Seq: WDCC01000016.1 Bacteroides xylanisolvens strain BIOML-A3 scaffold16_size133789, whole genome shotgun sequence (133789 bp)
Overview 1 RT 1: 80227-91629 bp Neighborhood of RT #1 [80227, 91697] DUF1896 N6_Mtase N6_Mtase COG4646 matK RVT-GII Intron_maturas2 COG4646 Helicase_C PRK13351 Feature: gene Location: 80227-80826 bp Feature: domain Description: DUF1896 Location: 80404-80824 bp Feature: domain Description: DUF1896 Location: 80404-80824 bp Feature: gene Location: 80816-84007 bp Feature: domain Description: N6_Mtase Location: 81128-81236 bp Feature: domain Description: N6 _Mtase Location: 81128-81236 bp Feature: domain Description: N6_Mtase Location: 81374-81731 bp Feature: domain Description: N6 _Mtase Location: 81374-81731 bp Feature: domain Description: COG4646 Location: 83060-83996 bp Feature: domain Description: COG46 46 Location: 8306 0-83996 bp Feature: gene Location: 84560-86362 bp Feature: domain Description: matK Location: 84629-84716 bp Feature: domain Description: matK Location: 846 29-84716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84824-85646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84824-856 46 bp Feature: domain Description: Intron_maturas2 Location: 85796-86030 bp Feature: domain Description: Intron_maturas2 Location: 85796 -86 030 bp Feature: gene Location: 86349-89114 bp Feature: domain Description: COG4646 Location: 86463-87603 bp Feature: domain Description: COG46 46 Location: 86 46 3-876 03 bp Feature: domain Description: Helicase_C Location: 87816-88014 bp Feature: domain Description: Helicase_C Location: 87816 -88014 bp Feature: gene Location: 89772-91697 bp Feature: domain Description: PRK13351 Location: 89775-91629 bp Feature: domain Description: PRK13351 Location: 89775-916 29 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1896 (pfam08989), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), matK (CHL00002), RVT-GII, Intron_maturas2 (pfam01348), Helicase_C (pfam00271), PRK13351 (elongation factor G-like protein)

Seq: WDCC01000032.1 Bacteroides xylanisolvens strain BIOML-A3 scaffold32_size83193, whole genome shotgun sequence (83193 bp)
Overview 1 RT 1: 10597-12140 bp Neighborhood of RT #1 [10597, 12140] RVT-GII HTH_28 Feature: gene Location: 10597-10959 bp Feature: gene Location: 10963-11172 bp Feature: gene Location: 11202-11399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11205-11397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11205-11397 bp Feature: gene Location: 11520-11810 bp Feature: domain Description: HTH_28 Location: 11544-11688 bp Feature: domain Description: HTH_28 Location: 11544-11688 bp Feature: gene Location: 11988-12140 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_28 (pfam13518)

Seq: WDCC01000036.1 Bacteroides xylanisolvens strain BIOML-A3 scaffold36_size69937, whole genome shotgun sequence (69937 bp)
Overview 1 RT 1: 13549-27053 bp Neighborhood of RT #1 [13549, 27053] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 13549-13791 bp Feature: gene Location: 13971-14456 bp Feature: gene Location: 14359-15756 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 14572-15166 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 14572-15166 bp Feature: gene Location: 16273-23010 bp Feature: domain Description: Laminin_G_3 Location: 17734-17812 bp Feature: domain Description: Laminin_G_3 Location: 17734-178 12 bp Feature: domain Description: Laminin_G_3 Location: 18463-18889 bp Feature: domain Description: Laminin_G_3 Location: 18 463-18 8 8 9 bp Feature: gene Location: 23037-27053 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: WDCC01000054.1 Bacteroides xylanisolvens strain BIOML-A3 scaffold54_size33991, whole genome shotgun sequence (33991 bp)
Overview 1 RT 1: 20232-32633 bp Neighborhood of RT #1 [20232, 32758] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons PDDEXK_2 Feature: gene Location: 20232-22031 bp Feature: domain Description: rpsA Location: 20301-21900 bp Feature: domain Description: rpsA Location: 20301-219 00 bp Feature: gene Location: 22128-28169 bp Feature: domain Description: DUF4011 Location: 23358-23871 bp Feature: domain Description: DUF4011 Location: 23358-23871 bp Feature: domain Description: DEXXQc_SF1 Location: 24210-24651 bp Feature: domain Description: DEXXQc_SF1 Location: 24210-24651 bp Feature: domain Description: DEXXQc_SF1 Location: 25647-26397 bp Feature: domain Description: DEXXQc_SF1 Location: 25647-2639 7 bp Feature: domain Description: TIGR00376 Location: 26526-26916 bp Feature: domain Description: TIGR00376 Location: 26526-269 16 bp Feature: domain Description: MTES_1575 Location: 27069-27354 bp Feature: domain Description: MTES_1575 Location: 27069 -27354 bp Feature: domain Description: DUF3320 Location: 27684-27819 bp Feature: domain Description: DUF3320 Location: 27684-27819 bp Feature: gene Location: 28220-29350 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 28541-29084 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 28541-29 084 bp Feature: gene Location: 29558-31747 bp Feature: gene Location: 31934-32758 bp Feature: domain Description: PDDEXK_2 Location: 31955-32633 bp Feature: domain Description: PDDEXK_2 Location: 319 55-32633 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, PDDEXK_2 (pfam12784)