myRT

myRT report for GCA_009103215.1_ASM910321v1

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Seq: WDDL01000105.1 Bacteroides xylanisolvens strain BIOML-A39 scaffold105_size17656, whole genome shotgun sequence (17656 bp)
Overview 1 RT 1: 4433-16834 bp Neighborhood of RT #1 [4433, 16959] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons PDDEXK_2 Feature: gene Location: 4433-6232 bp Feature: domain Description: rpsA Location: 4502-6101 bp Feature: domain Description: rpsA Location: 4502-61 01 bp Feature: gene Location: 6329-12370 bp Feature: domain Description: DUF4011 Location: 7559-8072 bp Feature: domain Description: DUF401 1 Location: 7559-8072 bp Feature: domain Description: DEXXQc_SF1 Location: 8411-8840 bp Feature: domain Description: DEXXQc_SF1 Location: 841 1 -8840 bp Feature: domain Description: DEXXQc_SF1 Location: 9839-10598 bp Feature: domain Description: DEXXQc_SF1 Location: 9839-1 0598 bp Feature: domain Description: TIGR00376 Location: 10727-11117 bp Feature: domain Description: TIGR00376 Location: 1 0727-1 1 1 1 7 bp Feature: domain Description: MTES_1575 Location: 11270-11555 bp Feature: domain Description: MTES_1 575 Location: 1 1 270-1 1 555 bp Feature: domain Description: DUF3320 Location: 11885-12020 bp Feature: domain Description: DUF3320 Location: 1 1 885-1 2020 bp Feature: gene Location: 12421-13551 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12742-13285 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 2742-1 3285 bp Feature: gene Location: 13759-15966 bp Feature: gene Location: 16135-16959 bp Feature: domain Description: PDDEXK_2 Location: 16156-16834 bp Feature: domain Description: PDDEXK_2 Location: 1 61 56-1 6834 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, PDDEXK_2 (pfam12784)

Seq: WDDL01000172.1 Bacteroides xylanisolvens strain BIOML-A39 scaffold172_size5551, whole genome shotgun sequence (5551 bp)
Overview 1 RT 1: 1022-3918 bp Neighborhood of RT #1 [1022, 3918] RVT-DGRs Feature: gene Location: 1022-1330 bp Feature: gene Location: 1352-1609 bp Feature: gene Location: 1685-3013 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1925-2522 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 192 5-2 52 2 bp Feature: gene Location: 3010-3495 bp Feature: gene Location: 3676-3918 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDL01000001.1 Bacteroides xylanisolvens strain BIOML-A39 scaffold1_size198451, whole genome shotgun sequence (198451 bp)
Overview 1 RT 1: 58577-61785 bp Neighborhood of RT #1 [58577, 61785] RVT-UG27 Feature: gene Location: 58577-58855 bp Feature: gene Location: 58885-59151 bp Feature: gene Location: 59201-60463 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 59393-60029 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 593 93 -60029 bp Feature: gene Location: 60456-61124 bp Feature: gene Location: 61138-61785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WDDL01000208.1 Bacteroides xylanisolvens strain BIOML-A39 scaffold208_size2483, whole genome shotgun sequence (2483 bp)
Overview 1 RT 1: 2-2344 bp Neighborhood of RT #1 [2, 2370] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 2-133 bp Feature: gene Location: 535-2370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 829-1651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 829-1651 bp Feature: domain Description: Intron_maturas2 Location: 1810-2179 bp Feature: domain Description: Intron_maturas2 Location: 1810-2179 bp Feature: domain Description: HNHc Note: nucleases Location: 2203-2344 bp Feature: domain Description: HNHc Note: nucleases Location: 2203-234 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDDL01000028.1 Bacteroides xylanisolvens strain BIOML-A39 scaffold28_size62542, whole genome shotgun sequence (62542 bp)
Overview 1 RT 1: 60171-62467 bp Neighborhood of RT #1 [60171, 62514] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 60171-60980 bp Feature: domain Description: DUF1566 Location: 60702-60951 bp Feature: domain Description: DUF15 66 Location: 60702-6095 1 bp Feature: gene Location: 61127-61534 bp Feature: domain Description: Avd_like Location: 61160-61469 bp Feature: domain Description: Avd_like Location: 61160-61469 bp Feature: gene Location: 61549-62514 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 61924-62467 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 61924-62467 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: WDDL01000031.1 Bacteroides xylanisolvens strain BIOML-A39 scaffold31_size56455, whole genome shotgun sequence (56455 bp)
Overview 1 RT 1: 14436-22724 bp Neighborhood of RT #1 [14436, 22724] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 DUF4134 RVT_N RVT-GII GIIM Feature: gene Location: 14436-15068 bp Feature: domain Description: DUF4141 Location: 14460-14607 bp Feature: domain Description: DUF4141 Location: 1446 0-146 07 bp Feature: gene Location: 15089-15547 bp Feature: domain Description: Bac_Flav_CT_G Location: 15107-15533 bp Feature: domain Description: Bac_Flav_CT_G Location: 15107-15533 bp Feature: gene Location: 15625-17436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15889-16711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15889-16 711 bp Feature: domain Description: Intron_maturas2 Location: 16786-17101 bp Feature: domain Description: Intron_maturas2 Location: 16 786 -17101 bp Feature: domain Description: HNHc Note: nucleases Location: 17257-17407 bp Feature: domain Description: HNHc Note: nucleases Location: 17257-17407 bp Feature: gene Location: 17782-17955 bp Feature: gene Location: 17983-19812 bp Feature: domain Description: Bac_Flav_CT_G Location: 17986-19798 bp Feature: domain Description: Bac_Flav_CT_G Location: 17986 -19798 bp Feature: gene Location: 20042-20392 bp Feature: domain Description: DUF4133 Location: 20057-20327 bp Feature: domain Description: DUF4133 Location: 20057-20327 bp Feature: gene Location: 20404-20646 bp Feature: domain Description: DUF4134 Location: 20551-20641 bp Feature: domain Description: DUF4134 Location: 20551-206 41 bp Feature: gene Location: 20651-22300 bp Feature: domain Description: RVT_N Location: 20708-20951 bp Feature: domain Description: RVT_N Location: 20708-20951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20996-21644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20996 -216 44 bp Feature: domain Description: GIIM Note: maturase Location: 21701-21932 bp Feature: domain Description: GIIM Note: maturase Location: 21701-21932 bp Feature: gene Location: 22404-22556 bp Feature: gene Location: 22569-22724 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), GIIM (pfam08388)

Seq: WDDL01000003.1 Bacteroides xylanisolvens strain BIOML-A39 scaffold3_size164131, whole genome shotgun sequence (164131 bp)
Overview 1 RT 1: 109917-113751 bp Neighborhood of RT #1 [109917, 113751] Phage_holin_4_1 RVT-DGRs Feature: gene Location: 109917-110387 bp Feature: domain Description: Phage_holin_4_1 Location: 110004-110316 bp Feature: domain Description: Phage_holin_4_1 Location: 110004-110316 bp Feature: gene Location: 110389-110760 bp Feature: gene Location: 110738-111772 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 110948-111560 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 110948-111560 bp Feature: gene Location: 112029-112373 bp Feature: gene Location: 112417-113751 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), RVT-DGRs

Seq: WDDL01000063.1 Bacteroides xylanisolvens strain BIOML-A39 scaffold63_size34867, whole genome shotgun sequence (34867 bp)
Overview 1 RT 1: 23772-33234 bp Neighborhood of RT #1 [23772, 33234] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 23772-30509 bp Feature: domain Description: Laminin_G_3 Location: 25233-25311 bp Feature: domain Description: Laminin_G_3 Location: 25233-25311 bp Feature: domain Description: Laminin_G_3 Location: 25962-26388 bp Feature: domain Description: Laminin_G_3 Location: 25962-2638 8 bp Feature: gene Location: 30754-30909 bp Feature: gene Location: 31026-32330 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31239-31833 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31239-318 33 bp Feature: gene Location: 32327-32812 bp Feature: gene Location: 32992-33234 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: WDDL01000007.1 Bacteroides xylanisolvens strain BIOML-A39 scaffold7_size140360, whole genome shotgun sequence (140360 bp)
Overview 1 RT 1: 123695-127644 bp Neighborhood of RT #1 [123695, 127644] RVT-DGRs Feature: gene Location: 123695-123985 bp Feature: gene Location: 123995-125356 bp Feature: gene Location: 125689-126876 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 126022-126649 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 126022-126649 bp Feature: gene Location: 126839-127267 bp Feature: gene Location: 127264-127644 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs