myRT

myRT report for GCA_009148965.1_ASM914896v1

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Seq: WDEM01000014.1 Bacteroides xylanisolvens strain BIOML-A68 scaffold14_size336564, whole genome shotgun sequence (337042 bp)
Overview 1 RT 1: 113015-120956 bp Neighborhood of RT #1 [113015, 120970] SMC_prok_B Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Bac_Flav_CT_G Feature: gene Location: 113015-115555 bp Feature: domain Description: SMC_prok_B Location: 114563-114875 bp Feature: domain Description: SMC_prok_B Location: 1 1 4563-1 1 4875 bp Feature: gene Location: 115776-116321 bp Feature: domain Description: Bac_Flav_CT_G Location: 115794-116208 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 1 5794-1 1 6208 bp Feature: gene Location: 116399-118210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116663-117485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 6663-1 1 7485 bp Feature: domain Description: Intron_maturas2 Location: 117560-117875 bp Feature: domain Description: Intron_maturas2 Location: 1 1 7560-1 1 7875 bp Feature: domain Description: HNHc Note: nucleases Location: 118031-118181 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 8031 -1 1 81 81 bp Feature: gene Location: 118556-118729 bp Feature: gene Location: 118757-120970 bp Feature: domain Description: Bac_Flav_CT_G Location: 118907-120416 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 1 8907-1 2041 6 bp Feature: domain Description: Bac_Flav_CT_G Location: 120488-120956 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 20488-1 20956 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SMC_prok_B (TIGR02168), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDEM01000001.1 Bacteroides xylanisolvens strain BIOML-A68 scaffold1_size322182, whole genome shotgun sequence (322182 bp)
Overview 1 RT 1: 69900-71931 bp Neighborhood of RT #1 [69900, 71931] RVT-DGRs Feature: gene Location: 69900-70103 bp Feature: gene Location: 70143-70325 bp Feature: gene Location: 70387-71202 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 70720-71047 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7072 0-71047 bp Feature: gene Location: 71168-71365 bp Feature: gene Location: 71347-71931 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDEM01000022.1 Bacteroides xylanisolvens strain BIOML-A68 scaffold22_size99122, whole genome shotgun sequence (99122 bp)
Overview 1 RT 1: 20209-24796 bp Neighborhood of RT #1 [20209, 24828] MPTase-PolyVal RVT-GII Intron_maturas2 DUF1738 Feature: gene Location: 20209-20580 bp Feature: gene Location: 20635-21936 bp Feature: domain Description: MPTase-PolyVal Location: 20890-21202 bp Feature: domain Description: MPTase-PolyVal Location: 20890-21202 bp Feature: gene Location: 21950-23761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22214-23036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22214-23 03 6 bp Feature: domain Description: Intron_maturas2 Location: 23177-23417 bp Feature: domain Description: Intron_maturas2 Location: 23 177-23 417 bp Feature: gene Location: 23892-24149 bp Feature: gene Location: 24325-24828 bp Feature: domain Description: DUF1738 Location: 24379-24796 bp Feature: domain Description: DUF173 8 Location: 243 79-24796 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MPTase-PolyVal (pfam18818), RVT-GII, Intron_maturas2 (pfam01348), DUF1738 (pfam08401)

Seq: WDEM01000026.1 Bacteroides xylanisolvens strain BIOML-A68 scaffold26_size69807, whole genome shotgun sequence (69807 bp)
Overview 1 RT 1: 50333-59763 bp Neighborhood of RT #1 [50333, 59763] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 50333-57052 bp Feature: domain Description: Laminin_G_3 Location: 51776-51854 bp Feature: domain Description: Laminin_G_3 Location: 51776-51854 bp Feature: domain Description: Laminin_G_3 Location: 52505-52931 bp Feature: domain Description: Laminin_G_3 Location: 52505-52931 bp Feature: gene Location: 57297-57452 bp Feature: gene Location: 57556-58860 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 57772-58363 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 57772-58363 bp Feature: gene Location: 58857-59342 bp Feature: gene Location: 59521-59763 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: WDEM01000029.1 Bacteroides xylanisolvens strain BIOML-A68 scaffold29_size65657, whole genome shotgun sequence (65657 bp)
Overview 1 RT 1: 1199-13594 bp Neighborhood of RT #1 [1199, 13725] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 1199-2023 bp Feature: domain Description: PDDEXK_2 Location: 1220-1898 bp Feature: domain Description: PDDEXK_2 Location: 1220-1898 bp Feature: gene Location: 2192-4399 bp Feature: gene Location: 4607-5737 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4928-5471 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4928-5 471 bp Feature: gene Location: 5788-11829 bp Feature: domain Description: DUF4011 Location: 7018-7531 bp Feature: domain Description: DUF4011 Location: 7018-75 31 bp Feature: domain Description: DEXXQc_SF1 Location: 7870-8311 bp Feature: domain Description: DEXXQc_SF1 Location: 7870-8311 bp Feature: domain Description: DEXXQc_SF1 Location: 9307-10057 bp Feature: domain Description: DEXXQc_SF1 Location: 9307-1005 7 bp Feature: domain Description: TIGR00376 Location: 10186-10576 bp Feature: domain Description: TIGR00376 Location: 10186-105 76 bp Feature: domain Description: MTES_1575 Location: 10729-11014 bp Feature: domain Description: MTES_15 75 Location: 10729-11014 bp Feature: domain Description: DUF3320 Location: 11344-11479 bp Feature: domain Description: DUF3320 Location: 11344-11479 bp Feature: gene Location: 11926-13725 bp Feature: domain Description: rpsA Location: 11995-13594 bp Feature: domain Description: rpsA Location: 11995 -135 94 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784)

Seq: WDEM01000055.1 Bacteroides xylanisolvens strain BIOML-A68 scaffold55_size60428, whole genome shotgun sequence (60428 bp)
Overview 1 RT 1: 29971-34302 bp Neighborhood of RT #1 [29971, 34302] NlpD dnaG RVT-GII Intron_maturas2 Toprim_2 Feature: gene Location: 29971-30423 bp Feature: domain Description: NlpD Location: 30001-30385 bp Feature: domain Description: NlpD Location: 30001-30385 bp Feature: gene Location: 30440-30598 bp Feature: domain Description: dnaG Location: 30509-30590 bp Feature: domain Description: dnaG Location: 30509-30590 bp Feature: gene Location: 31170-32978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31434-32256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31434-32256 bp Feature: domain Description: Intron_maturas2 Location: 32325-32634 bp Feature: domain Description: Intron_maturas2 Location: 32325-326 34 bp Feature: gene Location: 32950-33873 bp Feature: domain Description: Toprim_2 Location: 33496-33778 bp Feature: domain Description: Toprim_2 Location: 33496 -33778 bp Feature: gene Location: 33901-34302 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NlpD (COG0739), dnaG (TIGR01391), RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155)

Seq: WDEM01000081.1 Bacteroides xylanisolvens strain BIOML-A68 scaffold81_size23586, whole genome shotgun sequence (23586 bp)
Overview 1 RT 1: 2-4739 bp Neighborhood of RT #1 [2, 4753] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 2-1573 bp Feature: domain Description: Bac_Flav_CT_G Location: 122-1574 bp Feature: domain Description: Bac_Flav_CT_G Location: 122-157 4 bp Feature: gene Location: 1570-3231 bp Feature: RT Description: RVT_N Location: 1624-1867 bp Feature: RT Description: RVT_N Location: 1624-1867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1912-2560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1912-2560 bp Feature: domain Description: GIIM Note: maturase Location: 2614-2845 bp Feature: domain Description: GIIM Note: maturase Location: 2614-2845 bp Feature: gene Location: 3313-3693 bp Feature: gene Location: 3815-4753 bp Feature: domain Description: Bac_Flav_CT_G Location: 3818-4739 bp Feature: domain Description: Bac_Flav_CT_G Location: 3818-47 39 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Bac_Flav_CT_G (TIGR03783)

Seq: WDEM01000097.1 Bacteroides xylanisolvens strain BIOML-A68 scaffold97_size7193, whole genome shotgun sequence (7878 bp)
Overview 1 RT 1: 1280-5429 bp Neighborhood of RT #1 [1280, 5429] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs Feature: gene Location: 1280-2425 bp Feature: domain Description: Arm-DNA-bind_5 Location: 1304-1550 bp Feature: domain Description: Arm-DNA-bind_5 Location: 1304-1550 bp Feature: domain Description: Phage_int_SAM_5 Location: 1589-1874 bp Feature: domain Description: Phage_int_SAM_5 Location: 158 9-18 74 bp Feature: domain Description: INTN1_C_like Location: 1913-2387 bp Feature: domain Description: INTN1_C_like Location: 1913-238 7 bp Feature: gene Location: 2475-2969 bp Feature: gene Location: 2971-4326 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3247-3838 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3247-38 38 bp Feature: gene Location: 4471-5058 bp Feature: gene Location: 5262-5429 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-DGRs