myRT

myRT report for GCA_009153235.1_ASM915323v1

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Seq: WDDZ01000105.1 Bacteroides xylanisolvens strain BIOML-A54 scaffold105_size20292, whole genome shotgun sequence (20292 bp)
Overview 1 RT 1: 1-2044 bp Neighborhood of RT #1 [1, 2044] RVT-DGRs Feature: gene Location: 1-1116 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 28-625 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 28-625 bp Feature: gene Location: 1113-1598 bp Feature: gene Location: 1802-2044 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDZ01000114.1 Bacteroides xylanisolvens strain BIOML-A54 scaffold114_size18248, whole genome shotgun sequence (18248 bp)
Overview 1 RT 1: 4433-16834 bp Neighborhood of RT #1 [4433, 16959] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons PDDEXK_2 Feature: gene Location: 4433-6232 bp Feature: domain Description: rpsA Location: 4502-6101 bp Feature: domain Description: rpsA Location: 4502 -6101 bp Feature: gene Location: 6329-12370 bp Feature: domain Description: DUF4011 Location: 7559-8072 bp Feature: domain Description: DUF4011 Location: 7559-8072 bp Feature: domain Description: DEXXQc_SF1 Location: 8411-8840 bp Feature: domain Description: DEXXQc_SF1 Location: 8411-8840 bp Feature: domain Description: DEXXQc_SF1 Location: 9839-10598 bp Feature: domain Description: DEXXQc_SF1 Location: 9839-10598 bp Feature: domain Description: TIGR00376 Location: 10727-11117 bp Feature: domain Description: TIGR00376 Location: 1072 7-11117 bp Feature: domain Description: MTES_1575 Location: 11270-11555 bp Feature: domain Description: MTES_1575 Location: 112 70-11555 bp Feature: domain Description: DUF3320 Location: 11885-12020 bp Feature: domain Description: DUF332 0 Location: 11885-12 02 0 bp Feature: gene Location: 12421-13551 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12742-13285 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 742 -132 85 bp Feature: gene Location: 13759-15966 bp Feature: gene Location: 16135-16959 bp Feature: domain Description: PDDEXK_2 Location: 16156-16834 bp Feature: domain Description: PDDEXK_2 Location: 16156-16834 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, PDDEXK_2 (pfam12784)

Seq: WDDZ01000143.1 Bacteroides xylanisolvens strain BIOML-A54 scaffold143_size12185, whole genome shotgun sequence (12185 bp)
Overview 1 RT 1: 9814-12110 bp Neighborhood of RT #1 [9814, 12157] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 9814-10623 bp Feature: domain Description: DUF1566 Location: 10345-10594 bp Feature: domain Description: DUF1566 Location: 103 45-10594 bp Feature: gene Location: 10770-11177 bp Feature: domain Description: Avd_like Location: 10803-11112 bp Feature: domain Description: Avd_like Location: 10803 -11112 bp Feature: gene Location: 11192-12157 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11567-12110 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11567-12110 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: WDDZ01000181.1 Bacteroides xylanisolvens strain BIOML-A54 scaffold181_size5690, whole genome shotgun sequence (5690 bp)
Overview 1 RT 1: 1-2021 bp Neighborhood of RT #1 [1, 2021] RVT-DGRs Feature: gene Location: 1-1116 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 28-625 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 28-625 bp Feature: gene Location: 1113-1598 bp Feature: gene Location: 1779-2021 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDZ01000021.1 Bacteroides xylanisolvens strain BIOML-A54 scaffold21_size68357, whole genome shotgun sequence (68357 bp)
Overview 1 RT 1: 51692-55641 bp Neighborhood of RT #1 [51692, 55641] RVT-DGRs Feature: gene Location: 51692-51982 bp Feature: gene Location: 51992-53353 bp Feature: gene Location: 53686-54873 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 54019-54646 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5 4019-5 4646 bp Feature: gene Location: 54836-55264 bp Feature: gene Location: 55261-55641 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WDDZ01000233.1 Bacteroides xylanisolvens strain BIOML-A54 scaffold233_size2483, whole genome shotgun sequence (2483 bp)
Overview 1 RT 1: 114-2482 bp Neighborhood of RT #1 [114, 2482] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 114-1949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408-1230 bp Feature: domain Description: Intron_maturas2 Location: 1389-1758 bp Feature: domain Description: Intron_maturas2 Location: 1389-1758 bp Feature: domain Description: HNHc Note: nucleases Location: 1782-1923 bp Feature: domain Description: HNHc Note: nucleases Location: 1782-1923 bp Feature: gene Location: 2351-2482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WDDZ01000027.1 Bacteroides xylanisolvens strain BIOML-A54 scaffold27_size56390, whole genome shotgun sequence (56390 bp)
Overview 1 RT 1: 14371-22659 bp Neighborhood of RT #1 [14371, 22659] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 DUF4134 RVT_N RVT-GII GIIM Feature: gene Location: 14371-15003 bp Feature: domain Description: DUF4141 Location: 14395-14542 bp Feature: domain Description: DUF4141 Location: 14395-14542 bp Feature: gene Location: 15024-15482 bp Feature: domain Description: Bac_Flav_CT_G Location: 15042-15468 bp Feature: domain Description: Bac_Flav_CT_G Location: 15042-15468 bp Feature: gene Location: 15560-17371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15824-16646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15824-16646 bp Feature: domain Description: Intron_maturas2 Location: 16721-17036 bp Feature: domain Description: Intron_maturas2 Location: 167 21-17 036 bp Feature: domain Description: HNHc Note: nucleases Location: 17192-17342 bp Feature: domain Description: HNHc Note: nucleases Location: 17 192-17 342 bp Feature: gene Location: 17717-17890 bp Feature: gene Location: 17918-19747 bp Feature: domain Description: Bac_Flav_CT_G Location: 17921-19733 bp Feature: domain Description: Bac_Flav_CT_G Location: 17 921-197 33 bp Feature: gene Location: 19977-20327 bp Feature: domain Description: DUF4133 Location: 19992-20262 bp Feature: domain Description: DUF4133 Location: 19992-20262 bp Feature: gene Location: 20339-20581 bp Feature: domain Description: DUF4134 Location: 20486-20576 bp Feature: domain Description: DUF4134 Location: 20486-2057 6 bp Feature: gene Location: 20586-22235 bp Feature: domain Description: RVT_N Location: 20643-20886 bp Feature: domain Description: RVT_N Location: 20643-20886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20931-21579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20931-2157 9 bp Feature: domain Description: GIIM Note: maturase Location: 21636-21867 bp Feature: domain Description: GIIM Note: maturase Location: 21636-21867 bp Feature: gene Location: 22339-22491 bp Feature: gene Location: 22504-22659 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), GIIM (pfam08388)

Seq: WDDZ01000002.1 Bacteroides xylanisolvens strain BIOML-A54 scaffold2_size176886, whole genome shotgun sequence (176886 bp)
Overview 1 RT 1: 58575-61783 bp Neighborhood of RT #1 [58575, 61783] RVT-UG27 Feature: gene Location: 58575-58853 bp Feature: gene Location: 58883-59149 bp Feature: gene Location: 59199-60461 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 59391-60027 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 59391-60027 bp Feature: gene Location: 60454-61122 bp Feature: gene Location: 61136-61783 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: WDDZ01000035.1 Bacteroides xylanisolvens strain BIOML-A54 scaffold35_size48162, whole genome shotgun sequence (48162 bp)
Overview 1 RT 1: 25162-34624 bp Neighborhood of RT #1 [25162, 34624] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 25162-31899 bp Feature: domain Description: Laminin_G_3 Location: 26623-26701 bp Feature: domain Description: Laminin_G_3 Location: 26623-26701 bp Feature: domain Description: Laminin_G_3 Location: 27352-27778 bp Feature: domain Description: Laminin_G_3 Location: 27352-27778 bp Feature: gene Location: 32144-32299 bp Feature: gene Location: 32416-33720 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32629-33223 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32629 -33223 bp Feature: gene Location: 33717-34202 bp Feature: gene Location: 34382-34624 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: WDDZ01000003.1 Bacteroides xylanisolvens strain BIOML-A54 scaffold3_size167777, whole genome shotgun sequence (167777 bp)
Overview 1 RT 1: 50706-54469 bp Neighborhood of RT #1 [50706, 54540] RVT-DGRs Phage_holin_4_1 Feature: gene Location: 50706-52040 bp Feature: gene Location: 52084-52428 bp Feature: gene Location: 52685-53719 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 52895-53507 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 52895-53507 bp Feature: gene Location: 53697-54068 bp Feature: gene Location: 54070-54540 bp Feature: domain Description: Phage_holin_4_1 Location: 54157-54469 bp Feature: domain Description: Phage_holin_4_1 Location: 54157-54469 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_holin_4_1 (pfam05105)

Seq: WDDZ01000065.1 Bacteroides xylanisolvens strain BIOML-A54 scaffold65_size30809, whole genome shotgun sequence (30809 bp)
Overview 1 RT 1: 1-2026 bp Neighborhood of RT #1 [1, 2026] RVT-DGRs Feature: gene Location: 1-1116 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 28-625 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 28-625 bp Feature: gene Location: 1113-1598 bp Feature: gene Location: 1784-2026 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs