myRT

myRT report for GCA_009153275.1_ASM915327v1

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Seq: WDER01000128.1 Bacteroides xylanisolvens strain BIOML-A73 scaffold128_size7183, whole genome shotgun sequence (7183 bp)
Overview 1 RT 1: 3-6416 bp Neighborhood of RT #1 [3, 6541] DNA2 MTES_1575 DUF3320 RVT-Retrons PDDEXK_2 Feature: gene Location: 3-1952 bp Feature: domain Description: DNA2 Location: 12-783 bp Feature: domain Description: DNA2 Location: 1 2-783 bp Feature: domain Description: MTES_1575 Location: 852-1137 bp Feature: domain Description: MTES_1 575 Location: 852-1 1 37 bp Feature: domain Description: DUF3320 Location: 1467-1602 bp Feature: domain Description: DUF3320 Location: 1 467-1 602 bp Feature: gene Location: 2003-3133 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2324-2867 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2324-2867 bp Feature: gene Location: 3341-5548 bp Feature: gene Location: 5717-6541 bp Feature: domain Description: PDDEXK_2 Location: 5738-6416 bp Feature: domain Description: PDDEXK_2 Location: 5738-641 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DNA2 (COG1112), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, PDDEXK_2 (pfam12784)

Seq: WDER01000154.1 Bacteroides xylanisolvens strain BIOML-A73 scaffold154_size2984, whole genome shotgun sequence (2984 bp)
Overview 1 RT 1: 132-2961 bp Neighborhood of RT #1 [132, 2981] RVT-GII Intron_maturas2 Bac_Flav_CT_N Bac_Flav_CT_N Feature: gene Location: 132-1943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 396-1218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 396-12 18 bp Feature: domain Description: Intron_maturas2 Location: 1287-1596 bp Feature: domain Description: Intron_maturas2 Location: 12 87-1596 bp Feature: gene Location: 1978-2313 bp Feature: gene Location: 2484-2981 bp Feature: domain Description: Bac_Flav_CT_N Location: 2487-2562 bp Feature: domain Description: Bac_Flav_CT_N Location: 2 487-2 562 bp Feature: domain Description: Bac_Flav_CT_N Location: 2697-2961 bp Feature: domain Description: Bac_Flav_CT_N Location: 2 697-2 961 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), Bac_Flav_CT_N (TIGR03780)

Seq: WDER01000167.1 Bacteroides xylanisolvens strain BIOML-A73 scaffold167_size2209, whole genome shotgun sequence (2209 bp)
Overview 1 RT 1: 106-2140 bp Neighborhood of RT #1 [106, 2140] RVT_N RVT-GII GIIM Feature: gene Location: 106-1653 bp Feature: domain Description: RVT_N Location: 175-418 bp Feature: domain Description: RVT_N Location: 175-418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 463-1108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 463 -1108 bp Feature: domain Description: GIIM Note: maturase Location: 1162-1396 bp Feature: domain Description: GIIM Note: maturase Location: 1162-13 96 bp Feature: gene Location: 1693-1875 bp Feature: gene Location: 2009-2140 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WDER01000045.1 Bacteroides xylanisolvens strain BIOML-A73 scaffold45_size47681, whole genome shotgun sequence (47681 bp)
Overview 1 RT 1: 25836-28572 bp Neighborhood of RT #1 [25836, 28572] RVT_N RVT-GII GIIM Feature: gene Location: 25836-26039 bp Feature: gene Location: 26065-26199 bp Feature: gene Location: 26601-28103 bp Feature: domain Description: RVT_N Location: 26667-26910 bp Feature: domain Description: RVT_N Location: 26667-26910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26955-27597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26955-27597 bp Feature: domain Description: GIIM Note: maturase Location: 27654-27885 bp Feature: domain Description: GIIM Note: maturase Location: 27654 -27885 bp Feature: gene Location: 28189-28419 bp Feature: gene Location: 28426-28572 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WDER01000051.1 Bacteroides xylanisolvens strain BIOML-A73 scaffold51_size44677, whole genome shotgun sequence (44677 bp)
Overview 1 RT 1: 22656-27900 bp Neighborhood of RT #1 [22656, 28106] COG3943 RVT-UG2 HTH_17 DUF3987 Feature: gene Location: 22656-23021 bp Feature: domain Description: COG3943 Location: 22695-22947 bp Feature: domain Description: COG3943 Location: 22695 -22947 bp Feature: gene Location: 23186-24178 bp Feature: gene Location: 24190-25773 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 24427-25387 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 24427-25 387 bp Feature: gene Location: 26353-26718 bp Feature: domain Description: HTH_17 Location: 26488-26626 bp Feature: domain Description: HTH_17 Location: 26488-26626 bp Feature: gene Location: 26730-28106 bp Feature: domain Description: DUF3987 Location: 26880-27900 bp Feature: domain Description: DUF3987 Location: 26880-27900 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3943 (Uncharacterized conserved protein ), RVT-UG2, HTH_17 (pfam12728), DUF3987 (pfam13148)

Seq: WDER01000071.1 Bacteroides xylanisolvens strain BIOML-A73 scaffold71_size32346, whole genome shotgun sequence (32346 bp)
Overview 1 RT 1: 7068-9091 bp Neighborhood of RT #1 [7068, 9126] DDE_Tnp_IS66_C group_II_RT_mat RVT-GII Translocase_SecB Feature: gene Location: 7068-7268 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 7080-7182 bp Feature: domain Description: DDE_Tnp_IS6 6 _C Location: 7080-7182 bp Feature: gene Location: 7364-7666 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 7412-7649 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 7412-76 49 bp Feature: gene Location: 7723-8043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7726-7963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7726 -796 3 bp Feature: gene Location: 8448-8681 bp Feature: gene Location: 8710-9126 bp Feature: domain Description: Translocase_SecB Location: 8767-9091 bp Feature: domain Description: Translocase_SecB Location: 876 7-9091 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), group_II_RT_mat (TIGR04416), RVT-GII, Translocase_SecB (cl00251)