myRT

myRT report for GCA_009173485.1_ASM917348v1

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Seq: VZPD01000001.1 Klebsiella michiganensis strain CCUG 66515 contig_0000001, whole genome shotgun sequence (731164 bp)
Overview 1 RT 1: 192-2967 bp Neighborhood of RT #1 [192, 2967] PHA02517 RVT-Retrons Feature: gene Location: 192-404 bp Feature: domain Description: PHA02517 Location: 195-396 bp Feature: domain Description: PHA0251 7 Location: 1 95-396 bp Feature: gene Location: 884-1087 bp Feature: gene Location: 1247-2065 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1283-1808 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 283-1 808 bp Feature: gene Location: 2282-2428 bp Feature: gene Location: 2488-2967 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-Retrons

Seq: VZPD01000003.1 Klebsiella michiganensis strain CCUG 66515 contig_0000003, whole genome shotgun sequence (335964 bp)
Overview 1 RT 1: 308531-313726 bp Neighborhood of RT #1 [308531, 313734] YbjM PRK04972 RVT-UG11 D Feature: gene Location: 308531-308914 bp Feature: domain Description: YbjM Location: 308543-308876 bp Feature: domain Description: YbjM Location: 308543-308876 bp Feature: gene Location: 309173-310867 bp Feature: domain Description: PRK04972 Location: 309185-310856 bp Feature: domain Description: PRK04972 Location: 309185-310856 bp Feature: gene Location: 311133-311906 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 311268-311721 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 3112 68-31172 1 bp Feature: gene Location: 312444-312590 bp Feature: gene Location: 312646-313734 bp Feature: domain Description: D Location: 312661-313726 bp Feature: domain Description: D Location: 312 661-31372 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbjM (pfam11045), PRK04972 (putative transporter; Provisional), RVT-UG11, D (PHA02561)

Seq: VZPD01000007.1 Klebsiella michiganensis strain CCUG 66515 contig_0000007, whole genome shotgun sequence (236485 bp)
Overview 1 RT 1: 77816-85159 bp Neighborhood of RT #1 [77816, 85164] TrxB AcrR RVT-UG15 proA proB Feature: gene Location: 77816-78709 bp Feature: domain Description: TrxB Location: 77822-78698 bp Feature: domain Description: TrxB Location: 77822-78698 bp Feature: gene Location: 78829-79488 bp Feature: domain Description: AcrR Location: 78865-79453 bp Feature: domain Description: AcrR Location: 78865-79453 bp Feature: gene Location: 80432-81724 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 80519-80939 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 80519-8093 9 bp Feature: gene Location: 82797-84050 bp Feature: domain Description: proA Location: 82824-84015 bp Feature: domain Description: proA Location: 82824-84015 bp Feature: gene Location: 84061-85164 bp Feature: domain Description: proB Location: 84076-85159 bp Feature: domain Description: proB Location: 84076-85159 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TrxB (COG0492), AcrR (COG1309), RVT-UG15, proA (TIGR00407), proB (TIGR01027)

Seq: VZPD01000046.1 Klebsiella michiganensis strain CCUG 66515 contig_0000046, whole genome shotgun sequence (21715 bp)
Overview 1 RT 1: 10266-15619 bp Neighborhood of RT #1 [10266, 15756] umuC PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 10266-11537 bp Feature: domain Description: umuC Location: 10269-11529 bp Feature: domain Description: umuC Location: 10269-11529 bp Feature: gene Location: 11537-11968 bp Feature: domain Description: PRK10276 Location: 11588-11951 bp Feature: domain Description: PRK10276 Location: 11588-11951 bp Feature: gene Location: 12375-13862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12780-13470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12780-134 70 bp Feature: gene Location: 14111-15082 bp Feature: domain Description: StbA Location: 14114-15059 bp Feature: domain Description: StbA Location: 14 114 -15059 bp Feature: gene Location: 15085-15756 bp Feature: domain Description: Plasmid_stab_B Location: 15100-15307 bp Feature: domain Description: Plasmid_stab_B Location: 15100-15307 bp Feature: domain Description: Plasmid_stab_B Location: 15412-15619 bp Feature: domain Description: Plasmid_stab_B Location: 154 12-15619 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, StbA (pfam06406), Plasmid_stab_B (pfam10784)

Seq: VZPD01000074.1 Klebsiella michiganensis strain CCUG 66515 contig_0000074, whole genome shotgun sequence (1915 bp)
Overview 1 RT 1: 60-1831 bp Neighborhood of RT #1 [60, 1831] RVT-GII Feature: gene Location: 60-1544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 462-1152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 462-115 2 bp Feature: gene Location: 1598-1831 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII