myRT

myRT report for GCA_009183895.1_ASM918389v1

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Seq: WEFK01000001.1 Enterococcus faecium strain VRECG33, whole genome shotgun sequence (2842112 bp)
Overview 1 RT 1: 2712228-2717268 bp Neighborhood of RT #1 [2712228, 2717282] HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA Feature: gene Location: 2712228-2712371 bp Feature: gene Location: 2712464-2713648 bp Feature: domain Description: HTH_XRE Location: 2712494-2712638 bp Feature: domain Description: HTH_XRE Location: 271 2494-271 2638 bp Feature: domain Description: Rol_Rep_N Location: 2712671-2712935 bp Feature: domain Description: Rol_Rep_N Location: 271 2671 -271 2935 bp Feature: domain Description: Rep_trans Location: 2712959-2713571 bp Feature: domain Description: Rep_trans Location: 271 2959-271 3571 bp Feature: gene Location: 2714528-2716438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2714861-2715599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271 4861 -271 5599 bp Feature: domain Description: HNHc Note: nucleases Location: 2716154-2716319 bp Feature: domain Description: HNHc Note: nucleases Location: 271 61 54-271 631 9 bp Feature: gene Location: 2716626-2716766 bp Feature: gene Location: 2716779-2717282 bp Feature: domain Description: ArdA Location: 2716797-2717268 bp Feature: domain Description: ArdA Location: 271 6797-271 7268 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), RVT-GII, HNHc (smart00507), ArdA (pfam07275)

Seq: WEFK01000002.1 Enterococcus faecium strain VRECG33, whole genome shotgun sequence (188590 bp)
Overview 1 RT 1: 23907-28991 bp Neighborhood of RT #1 [23907, 28996] VirB4 RVT-GII HNHc MazE Feature: gene Location: 23907-25601 bp Feature: domain Description: VirB4 Location: 24225-24909 bp Feature: domain Description: VirB4 Location: 2 42 2 5-2 4909 bp Feature: gene Location: 25869-26102 bp Feature: gene Location: 26289-28166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26604-27342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6604-2 7342 bp Feature: domain Description: HNHc Note: nucleases Location: 27900-28053 bp Feature: domain Description: HNHc Note: nucleases Location: 2 7900-2 8053 bp Feature: gene Location: 28354-28674 bp Feature: gene Location: 28733-28996 bp Feature: domain Description: MazE Location: 28754-28991 bp Feature: domain Description: MazE Location: 2 8754-2 8991 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), MazE (COG2336)

Seq: WEFK01000003.1 Enterococcus faecium strain VRECG33, whole genome shotgun sequence (57021 bp)
Overview 1 RT 1: 4521-10374 bp Neighborhood of RT #1 [4521, 10493] VirB4 RVT-GII HNHc Glucosaminidase Peptidase_M23 Feature: gene Location: 4521-6215 bp Feature: domain Description: VirB4 Location: 4839-5523 bp Feature: domain Description: VirB4 Location: 483 9-5523 bp Feature: gene Location: 6483-6716 bp Feature: gene Location: 6903-8780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7218-7956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7218-7956 bp Feature: domain Description: HNHc Note: nucleases Location: 8514-8667 bp Feature: domain Description: HNHc Note: nucleases Location: 8514-8667 bp Feature: gene Location: 8968-9288 bp Feature: gene Location: 9288-10493 bp Feature: domain Description: Glucosaminidase Location: 9564-9960 bp Feature: domain Description: Glucosaminidase Location: 9564-9960 bp Feature: domain Description: Peptidase_M23 Location: 10137-10374 bp Feature: domain Description: Peptidase_M23 Location: 1013 7-103 74 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551)

Seq: WEFK01000004.1 Enterococcus faecium strain VRECG33, whole genome shotgun sequence (32309 bp)
Overview 1 RT 1: 18789-23655 bp Neighborhood of RT #1 [18789, 23684] Tra8 RVT-AbiP2 HsdM Rve Feature: gene Location: 18789-18950 bp Feature: gene Location: 19033-19986 bp Feature: domain Description: Tra8 Location: 19036-19963 bp Feature: domain Description: Tra8 Location: 19036-19963 bp Feature: gene Location: 19964-21439 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 20312-20777 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 20312-20777 bp Feature: gene Location: 21777-22964 bp Feature: domain Description: HsdM Location: 21798-22953 bp Feature: domain Description: HsdM Location: 21798-22953 bp Feature: gene Location: 22998-23684 bp Feature: domain Description: Rve Location: 23007-23655 bp Feature: domain Description: Rve Location: 23007-23655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra8 (COG2826), RVT-AbiP2, HsdM (COG0286), Rve (COG3316)