myRT

myRT report for GCA_009183945.1_ASM918394v1

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Seq: WEFN01000001.1 Enterococcus faecium strain VRECG29, whole genome shotgun sequence (2849582 bp)
Overview 1 RT 1: 257474-274367 bp 2 RT 2: 420148-426979 bp 3 RT 3: 2674220-2693468 bp 4 RT 4: 2754937-2759241 bp Neighborhood of RT #1 [257474, 274367] FtsK RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA AAA_10 RVT-GII AAA_10 Neighborhood of RT #2 [420148, 426987] CcmA AcrR RVT-GII GIIM CE4_DAC_u3_5s PRK13354 Neighborhood of RT #3 [2674220, 2693468] FtsK RVT-GII HNHc Zeta_toxin HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA TcpE AAA_10 RVT-GII AAA_10 Neighborhood of RT #4 [2754937, 2759241] PRK09290 AlbA_2 RVT-AbiP2 DUF3841 Feature: gene Location: 257474-258619 bp Feature: domain Description: FtsK Location: 258083-258599 bp Feature: domain Description: FtsK Location: 258083-258599 bp Feature: gene Location: 258985-259215 bp Feature: gene Location: 259334-261193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259643-260384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259643-260384 bp Feature: domain Description: HNHc Note: nucleases Location: 260939-261077 bp Feature: domain Description: HNHc Note: nucleases Location: 260939-261 077 bp Feature: gene Location: 261287-261571 bp Feature: gene Location: 261750-262955 bp Feature: domain Description: HTH_XRE Location: 261795-261939 bp Feature: domain Description: HTH_XRE Location: 261 795-261 939 bp Feature: domain Description: Rol_Rep_N Location: 261966-262233 bp Feature: domain Description: Rol_Rep_N Location: 261 966-262233 bp Feature: domain Description: Rep_trans Location: 262257-262866 bp Feature: domain Description: Rep_trans Location: 262257-262866 bp Feature: gene Location: 263739-265649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 264072-264810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 264072-26481 0 bp Feature: domain Description: HNHc Note: nucleases Location: 265365-265530 bp Feature: domain Description: HNHc Note: nucleases Location: 265365-265530 bp Feature: gene Location: 265810-265977 bp Feature: gene Location: 266094-266591 bp Feature: domain Description: ArdA Location: 266112-266577 bp Feature: domain Description: ArdA Location: 2661 1 2-266577 bp Feature: gene Location: 267003-268607 bp Feature: domain Description: AAA_10 Location: 268386-268572 bp Feature: domain Description: AAA_1 0 Location: 268386-268572 bp Feature: gene Location: 269304-271130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 269604-270303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 269604-270303 bp Feature: gene Location: 271264-272181 bp Feature: domain Description: AAA_10 Location: 271270-272149 bp Feature: domain Description: AAA_1 0 Location: 271 270-2721 49 bp Feature: gene Location: 272184-274367 bp Feature: gene Location: 420148-421029 bp Feature: domain Description: CcmA Location: 420151-421021 bp Feature: domain Description: CcmA Location: 4201 51 -421 021 bp Feature: gene Location: 421283-421882 bp Feature: domain Description: AcrR Location: 421301-421787 bp Feature: domain Description: AcrR Location: 421 301 -421 787 bp Feature: gene Location: 422369-423757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 422690-423305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 422690-423305 bp Feature: domain Description: GIIM Note: maturase Location: 423362-423578 bp Feature: domain Description: GIIM Note: maturase Location: 423362-423578 bp Feature: gene Location: 423850-425286 bp Feature: domain Description: CE4_DAC_u3_5s Location: 424654-425047 bp Feature: domain Description: CE4_DAC_u3_5s Location: 424654-425047 bp Feature: gene Location: 425731-426987 bp Feature: domain Description: PRK13354 Location: 425734-426979 bp Feature: domain Description: PRK1 3354 Location: 425734-426979 bp Feature: gene Location: 2674220-2675386 bp Feature: domain Description: FtsK Location: 2674901-2675366 bp Feature: domain Description: FtsK Location: 2674901 -2675366 bp Feature: gene Location: 2675752-2675982 bp Feature: gene Location: 2676101-2677960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2676410-2677151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 267641 0-26771 51 bp Feature: domain Description: HNHc Note: nucleases Location: 2677706-2677844 bp Feature: domain Description: HNHc Note: nucleases Location: 2677706-2677844 bp Feature: gene Location: 2678054-2678293 bp Feature: gene Location: 2678371-2679045 bp Feature: domain Description: Zeta_toxin Location: 2678470-2678953 bp Feature: domain Description: Zeta_toxin Location: 2678470-2678953 bp Feature: gene Location: 2680723-2680866 bp Feature: gene Location: 2680959-2682143 bp Feature: domain Description: HTH_XRE Location: 2680989-2681133 bp Feature: domain Description: HTH_XRE Location: 2680989-2681 1 33 bp Feature: domain Description: Rol_Rep_N Location: 2681166-2681430 bp Feature: domain Description: Rol_Rep_N Location: 2681 1 66-2681 430 bp Feature: domain Description: Rep_trans Location: 2681454-2682066 bp Feature: domain Description: Rep_trans Location: 2681 454-2682066 bp Feature: gene Location: 2683023-2684933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2683356-2684094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2683356-2684094 bp Feature: domain Description: HNHc Note: nucleases Location: 2684649-2684814 bp Feature: domain Description: HNHc Note: nucleases Location: 2684649-268481 4 bp Feature: gene Location: 2685121-2685261 bp Feature: gene Location: 2685274-2685777 bp Feature: domain Description: ArdA Location: 2685292-2685763 bp Feature: domain Description: ArdA Location: 2685292-2685763 bp Feature: gene Location: 2685837-2686226 bp Feature: domain Description: TcpE Location: 2685855-2686155 bp Feature: domain Description: TcpE Location: 2685855-26861 55 bp Feature: gene Location: 2686213-2687763 bp Feature: domain Description: AAA_10 Location: 2687542-2687725 bp Feature: domain Description: AAA_1 0 Location: 2687542-2687725 bp Feature: gene Location: 2688460-2690286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2688760-2689459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2688760-2689459 bp Feature: gene Location: 2690420-2691340 bp Feature: domain Description: AAA_10 Location: 2690426-2691305 bp Feature: domain Description: AAA_1 0 Location: 2690426-2691 305 bp Feature: gene Location: 2691345-2693468 bp Feature: gene Location: 2754937-2756211 bp Feature: domain Description: PRK09290 Location: 2754955-2756203 bp Feature: domain Description: PRK09290 Location: 2754955-2756203 bp Feature: gene Location: 2756312-2756626 bp Feature: domain Description: AlbA_2 Location: 2756351-2756522 bp Feature: domain Description: AlbA_2 Location: 2756351 -2756522 bp Feature: gene Location: 2756772-2758268 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2757180-2757636 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 27571 80-2757636 bp Feature: gene Location: 2758446-2758925 bp Feature: domain Description: DUF3841 Location: 2758455-2758830 bp Feature: domain Description: DUF3841 Location: 2758455-2758830 bp Feature: gene Location: 2759092-2759241 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FtsK (COG1674), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), ArdA (pfam07275), AAA_10 (pfam12846), CcmA (COG4133), AcrR (COG1309)
GIIM (pfam08388), CE4_DAC_u3_5s (cd10972), PRK13354 (tyrosyl-tRNA synthetase; Provisional), Zeta_toxin (pfam06414), TcpE (pfam12648), PRK09290 (allantoate amidohydrolase; Reviewed), AlbA_2 (pfam04326), RVT-AbiP2, DUF3841 (pfam12952)