myRT

myRT report for GCA_009184005.1_ASM918400v1

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Seq: WEFL01000001.1 Enterococcus faecium strain VRECG32, whole genome shotgun sequence (2757529 bp)
Overview 1 RT 1: 254585-268766 bp 2 RT 2: 410456-416393 bp 3 RT 3: 1158520-1164369 bp 4 RT 4: 1263264-1269937 bp 5 RT 5: 2627675-2635306 bp Neighborhood of RT #1 [254585, 268766] FtsK HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA AAA_10 RVT-GII AAA_10 Neighborhood of RT #2 [410456, 416401] dha_L_ycgS G6PD_bact RVT-GII GIIM Crp TnrB3 Neighborhood of RT #3 [1158520, 1164392] PRK06019 Adenylsuccinate_lyase_1 RVT-GII GIIM PRK09362 Neighborhood of RT #4 [1263264, 1269939] Tra8 FrsA RVT-GII GIIM GAPDH-I obgE Neighborhood of RT #5 [2627675, 2635306] TcpE AAA_10 RVT-GII AAA_10 Feature: gene Location: 254585-255970 bp Feature: domain Description: FtsK Location: 255194-255827 bp Feature: domain Description: FtsK Location: 2551 94-255827 bp Feature: gene Location: 256149-257354 bp Feature: domain Description: HTH_XRE Location: 256194-256338 bp Feature: domain Description: HTH_XRE Location: 2561 94-256338 bp Feature: domain Description: Rol_Rep_N Location: 256365-256632 bp Feature: domain Description: Rol_Rep_N Location: 256365-256632 bp Feature: domain Description: Rep_trans Location: 256656-257265 bp Feature: domain Description: Rep_trans Location: 256656-257265 bp Feature: gene Location: 258138-260048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258471-259209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258471 -259209 bp Feature: domain Description: HNHc Note: nucleases Location: 259764-259929 bp Feature: domain Description: HNHc Note: nucleases Location: 259764-259929 bp Feature: gene Location: 260209-260376 bp Feature: gene Location: 260493-260990 bp Feature: domain Description: ArdA Location: 260511-260976 bp Feature: domain Description: ArdA Location: 26051 1 -260976 bp Feature: gene Location: 261402-263006 bp Feature: domain Description: AAA_10 Location: 262785-262971 bp Feature: domain Description: AAA_1 0 Location: 262785-262971 bp Feature: gene Location: 263703-265529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 264003-264702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 264003-264702 bp Feature: gene Location: 265663-266580 bp Feature: domain Description: AAA_10 Location: 265669-266548 bp Feature: domain Description: AAA_1 0 Location: 265669-266548 bp Feature: gene Location: 266583-268766 bp Feature: gene Location: 410456-411061 bp Feature: domain Description: dha_L_ycgS Location: 410480-411038 bp Feature: domain Description: dha_L_ycgS Location: 41 0480-41 1 038 bp Feature: gene Location: 411208-411873 bp Feature: domain Description: G6PD_bact Location: 411217-411853 bp Feature: domain Description: G6PD_bact Location: 41 1 21 7-41 1 853 bp Feature: gene Location: 412378-413766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 412699-413314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 2699-41 331 4 bp Feature: domain Description: GIIM Note: maturase Location: 413371-413587 bp Feature: domain Description: GIIM Note: maturase Location: 41 3371 -41 3587 bp Feature: gene Location: 414055-414714 bp Feature: domain Description: Crp Location: 414106-414688 bp Feature: domain Description: Crp Location: 41 41 06-41 4688 bp Feature: gene Location: 414791-416401 bp Feature: domain Description: TnrB3 Location: 414803-416393 bp Feature: domain Description: TnrB3 Location: 41 4803-41 6393 bp Feature: gene Location: 1158520-1159644 bp Feature: domain Description: PRK06019 Location: 1158544-1159633 bp Feature: domain Description: PRK0601 9 Location: 1 1 58544-1 1 59633 bp Feature: gene Location: 1159657-1160952 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 1159669-1160938 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 1 1 59669-1 1 60938 bp Feature: gene Location: 1161479-1162867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1161800-1162415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 61 800-1 1 6241 5 bp Feature: domain Description: GIIM Note: maturase Location: 1162472-1162688 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 62472-1 1 62688 bp Feature: gene Location: 1163031-1163408 bp Feature: gene Location: 1163664-1164392 bp Feature: domain Description: PRK09362 Location: 1163667-1164369 bp Feature: domain Description: PRK09362 Location: 1 1 63667-1 1 64369 bp Feature: gene Location: 1263264-1264223 bp Feature: domain Description: Tra8 Location: 1263267-1264200 bp Feature: domain Description: Tra8 Location: 1 263267-1 264200 bp Feature: gene Location: 1264409-1265344 bp Feature: domain Description: FrsA Location: 1264613-1265336 bp Feature: domain Description: FrsA Location: 1 26461 3-1 265336 bp Feature: gene Location: 1265852-1267240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1266173-1266788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2661 73-1 266788 bp Feature: domain Description: GIIM Note: maturase Location: 1266845-1267061 bp Feature: domain Description: GIIM Note: maturase Location: 1 266845-1 267061 bp Feature: gene Location: 1267328-1268380 bp Feature: domain Description: GAPDH-I Location: 1267382-1268354 bp Feature: domain Description: GAPDH-I Location: 1 267382-1 268354 bp Feature: gene Location: 1268626-1269939 bp Feature: domain Description: obgE Location: 1268635-1269937 bp Feature: domain Description: obgE Location: 1 268635-1 269937 bp Feature: gene Location: 2627675-2628064 bp Feature: domain Description: TcpE Location: 2627693-2627993 bp Feature: domain Description: TcpE Location: 2627693-2627993 bp Feature: gene Location: 2628051-2629601 bp Feature: domain Description: AAA_10 Location: 2629380-2629563 bp Feature: domain Description: AAA_1 0 Location: 2629380-2629563 bp Feature: gene Location: 2630298-2632124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2630598-2631297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2630598-2631 297 bp Feature: gene Location: 2632258-2633178 bp Feature: domain Description: AAA_10 Location: 2632264-2633143 bp Feature: domain Description: AAA_1 0 Location: 2632264-26331 43 bp Feature: gene Location: 2633183-2635306 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FtsK (COG1674), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), RVT-GII, HNHc (smart00507), ArdA (pfam07275), AAA_10 (pfam12846), dha_L_ycgS (TIGR02365), G6PD_bact (pfam10786)
GIIM (pfam08388), Crp (pfam00325), TnrB3 (COG3559), PRK06019 (phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed), Adenylsuccinate_lyase_1 (cd01360), PRK09362 (phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed), Tra8 (COG2826), FrsA (COG1073), GAPDH-I (TIGR01534), obgE (PRK12299)
TcpE (pfam12648)

Seq: WEFL01000003.1 Enterococcus faecium strain VRECG32, whole genome shotgun sequence (56721 bp)
Overview 1 RT 1: 30790-35408 bp Neighborhood of RT #1 [30790, 35408] RepA_N RVT-GII GIIM Feature: gene Location: 30790-31875 bp Feature: domain Description: RepA_N Location: 30868-31090 bp Feature: domain Description: RepA_N Location: 30868-31090 bp Feature: gene Location: 32200-32469 bp Feature: gene Location: 33059-34447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33380-33995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33380-33995 bp Feature: domain Description: GIIM Note: maturase Location: 34052-34268 bp Feature: domain Description: GIIM Note: maturase Location: 34052 -342 68 bp Feature: gene Location: 34611-34943 bp Feature: gene Location: 35265-35408 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RepA_N (pfam06970), RVT-GII, GIIM (pfam08388)

Seq: WEFL01000004.1 Enterococcus faecium strain VRECG32, whole genome shotgun sequence (51173 bp)
Overview 1 RT 1: 28523-34391 bp Neighborhood of RT #1 [28523, 34465] Tra8 RVT-AbiP2 Transposase_mut HsdM Feature: gene Location: 28523-28684 bp Feature: gene Location: 28767-29720 bp Feature: domain Description: Tra8 Location: 28770-29697 bp Feature: domain Description: Tra8 Location: 28770-29697 bp Feature: gene Location: 29698-31173 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 30046-30511 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 3 0046-3 0511 bp Feature: gene Location: 31352-32524 bp Feature: domain Description: Transposase_mut Location: 31355-32492 bp Feature: domain Description: Transposase_mut Location: 3 13 55-3 2492 bp Feature: gene Location: 32843-34465 bp Feature: domain Description: HsdM Location: 32864-34391 bp Feature: domain Description: HsdM Location: 3 2864-3 43 91 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra8 (COG2826), RVT-AbiP2, Transposase_mut (pfam00872), HsdM (COG0286)